mdehoon b308ffe5f2 Support EMBOSS needle/water alignments to the reverse strand (#4142) ...

* update

* update

* update

* update

* update

* update

* add tests

2022-10-24 01:24:31 +09:00

..

alignret.txt

EMBOSS alignment output in pairs and simple formats, for testing with Bio.AlignIO and Bio.SeqIO

2008-05-14 15:30:12 +00:00

bac_find.primer3

Added generic Application framework, Commandline for Blast and Emboss primer related programs.

2001-12-14 13:04:22 +00:00

bac_find.psearch

Added generic Application framework, Commandline for Blast and Emboss primer related programs.

2001-12-14 13:04:22 +00:00

cds_forward.primer3

Added generic Application framework, Commandline for Blast and Emboss primer related programs.

2001-12-14 13:04:22 +00:00

cds_reverse.primer3

Added generic Application framework, Commandline for Blast and Emboss primer related programs.

2001-12-14 13:04:22 +00:00

emboss_pair_aln_full_blank_line.txt

Add test case with example output from Emboss that raises an exception under the master version but passes with the bug fix on this branch

2018-05-17 09:40:55 +01:00

internal_oligo.primer3

Patch by Jay Hesselberth for bug #1777.

2006-06-25 22:36:44 +00:00

matcher_pair.txt

Adding a five pairwise alignments EMBOSS matcher file to the AlignIO unit tests

2009-12-08 12:04:05 +00:00

matcher_simple.txt

Adding an EMBOSS matcher output file to the AlignIO unit tests

2009-12-08 11:51:13 +00:00

needle_asis.txt

Adding an EMBOSS needle test case where one sequence is much longer than the other (and also both have the same id due to the use of the 'asis' EMBOSS command line trick)

2008-07-14 10:59:09 +00:00

needle_nobrief_multiple.pair

ensure that nobrief output is handled correctly (#3673)

2021-07-31 23:46:08 +09:00

needle_overhang.txt

Move embedded test to Tests/Emboss/needle_overhang.txt

2021-08-27 13:41:34 +01:00

needle.txt

EMBOSS alignment output in pairs and simple formats, for testing with Bio.AlignIO and Bio.SeqIO

2008-05-14 15:30:12 +00:00

NirK_full.primer3

Adding two eprimer3 files used in the unit tests (should have been committed earlier today)

2010-03-03 17:09:58 +00:00

NirK.primer3

Adding two eprimer3 files used in the unit tests (should have been committed earlier today)

2010-03-03 17:09:58 +00:00

no_oligo.primer3

Test case where eprimer3 reports oligo without sequence

2013-01-31 13:55:01 +00:00

short.primer3

Added generic Application framework, Commandline for Blast and Emboss primer related programs.

2001-12-14 13:04:22 +00:00

water2.txt

Test and fix for parsing local alignments (e.g. from water) where the sequence does not start immediately

2009-04-04 21:11:50 +00:00

water_reverse1.txt

Support EMBOSS needle/water alignments to the reverse strand (#4142)

2022-10-24 01:24:31 +09:00

water_reverse2.txt

Support EMBOSS needle/water alignments to the reverse strand (#4142)

2022-10-24 01:24:31 +09:00

water_reverse3.txt

Support EMBOSS needle/water alignments to the reverse strand (#4142)

2022-10-24 01:24:31 +09:00

water_reverse4.txt

Support EMBOSS needle/water alignments to the reverse strand (#4142)

2022-10-24 01:24:31 +09:00

water.txt

EMBOSS alignment output in pairs and simple formats, for testing with Bio.AlignIO and Bio.SeqIO

2008-05-14 15:30:12 +00:00