mirror of
https://github.com/biopython/biopython.git
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20ad9bea6d
* Handle possible non-existent attrs in clusterbuster.py In commit bc0d58b, support was added for gap and weight paramters, but since these two attributes are not guaranteed to exist by parse and read methods, an AttributeError could be raised for non-clusterbuster motifs. An attribute check was added to allow motifs lacking gap and weight to be formatted properly. Co-authored-by: Ee Shan Liau Shirley <69098782+shirleyliau@users.noreply.github.com> * Add names to CONTRIB.rst * Use try-except to handle missing attributes Co-authored-by: Ee Shan Liau Shirley <69098782+shirleyliau@users.noreply.github.com> * Avoid CB output when an attribute is None In the previous commit, the skipping mechanism was switched to try-except blocks, and the cases when an attribute is None are no longer dealt with. This patch re-introduced `if m.weight` to prevent empty export fields in such cases. Co-authored-by: Ee Shan Liau Shirley <69098782+shirleyliau@users.noreply.github.com> --------- Co-authored-by: Ee Shan Liau Shirley <69098782+shirleyliau@users.noreply.github.com>
377 lines
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ReStructuredText
377 lines
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ReStructuredText
CONTRIBUTORS
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============
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This is a list of people who have made contributions to Biopython.
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People are listed alphabetically, as verified with Unix sort::
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$ grep "^- " CONTRIB.rst | LC_ALL=C sort -u -c -f
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This is certainly not comprehensive, and if you've been overlooked (sorry!),
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please open an issue on GitHub or mention it on the mailing list.
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- Aaron Gallagher <habnabit at gmail>
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- Aaron Kitzmiller <https://github.com/aaronk>
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- Aaron Rosenfeld <https://github.com/arosenfeld>
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- Adam Kurkiewicz <adam@kurkiewicz.pl>
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- Adam Novak <https://github.com/AdamNovak>
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- Adam Vandergriff <https://github.com/acvander>
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- Adhemar Zerlotini <https://github.com/azneto>
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- Adil Iqbal <https://github.com/Adil-Iqbal>
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- Adrian Altenhoff <https://github.com/alpae>
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- Alan Medlar <https://github.com/ajm>
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- Alessio Papini <first dot last at unifi dot it>
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- Alessio Quercia <https://github.com/AlessioQuercia>
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- Alex Crocker <alex.w.crocker at gmail>
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- Alex Morehead <https://github.com/amorehead>
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- Alexander Decurnou <https://github.com/adcrn>
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- Allis Tauri <https://github.com/allista>
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- Alona Levy-Jurgenson <https://github.com/alonalj>
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- Anders Pitman <https://github.com/anderspitman>
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- Andrea Pierleoni <andrea at the Italian domain biocomp dot unibo>
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- Andrea Rizzi <https://github.com/andrrizzi>
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- Andreas Kuntzagk <andreas.kuntzagk at domain mdc-berlin.de>
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- Andrei Istrate <andrei at ebi dot ac dot uk>
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- Andres Colubri <andres dot colubri at gmail dot com>
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- Andrew Dalke <dalke at domain dalke scientific dot com>
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- Andrew Guy <https://github.com/andrewguy>
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- Andrew Sczesnak <https://github.com/polyatail>
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- Andrey Raspopov <https://github.com/Andrey-Raspopov>
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- Andrius Merkys <https://github.com/merkys>
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- Anil Tuncel <https://github.com/anilbey>
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- Anne Pajon <ap one two at sanger ac uk>
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- Anthony Bradley <https://github.com/abradle>
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- Antonio Jesús Gálvez Muñoz <https://github.com/PyCreatine>
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- Antonio Trande <https://github.com/sagitter>
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- Antony Lee <https://github.com/anntzer>
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- Anuj Sharma <https://github.com/xulesc>
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- Ariel Aptekmann <https://github.com/aralap>
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- Arpan Sahoo <https://github.com/arpansahoo>
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- Artemi Bendandi <https://github.com/artbendandi>
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- Arup Ghosh <https://github.com/arupgsh>
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- Austin Varela <https://github.com/austinv11>
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- Aziz Khan <https://github.com/asntech>
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- Barbara Mühlemann <https://github.com/bamueh>
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- Bart de Koning <bratdaking gmail>
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- Bartek Wilczynski <bartek at domain rezolwenta.eu.org>
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- Bartosz Telenczuk <bartosz.telenczuk at domain gmail.com>
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- Ben Fulton <https://github.com/benfulton>
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- Ben Morris <https://github.com/bendmorris>
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- Ben Woodcroft <https://github.com/wwood>
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- Benedict Carling <https://github.com/Benedict-Carling>
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- Benjamin Rowell <https://github.com/benjaminr>
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- Benjamin Vaisvil <https://github.com/bvaisvil>
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- Bernhard C. Thiel <https://github.com/Bernhard10>
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- Bertrand Caron <https://github.com/bertrand-caron>
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- Bertrand Frottier <bertrand.frottier at domain free.fr>
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- Bertrand Néron <https://github.com/bneron>
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- Bill Barnard <bill at domain barnard-engineering.com>
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- Björn Johansson <bjorn_johansson@bio.uminho.pt>
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- Blaise Li <https://github.com/blaiseli>
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- Bob Bussell <rgb2003 at domain med.cornell.edu>
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- Bogdan T. <bogdan at pearlgen dot com>
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- Brad Chapman <https://github.com/chapmanb>
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- Brandon Carter <https://github.com/b-carter>
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- Brandon Invergo <https://github.com/brandoninvergo>
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- Brian Osborne <https://github.com/bosborne>
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- Bryan Brancotte <https://github.com/bryan-brancotte>
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- Bryan Lunt <https://github.com/bryan-lunt>
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- Caio Fontes <https://github.com/Caiofcas>
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- Cam McMenamie <https://github.com/kamurani>
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- Carlos Pena <https://github.com/carlosp420>
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- Carlos Ríos <https://github.com/Crosvera>
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- Catherine Lesuisse <https://github.com/kaskales>
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- Cecilia Alsmark <Cecilia.Alsmark at domain ebc.uu.se>
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- Chad Parmet <https://github.com/cparmet>
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- Chaitanya Gupta <https://github.com/iCHAIT>
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- Cheng Soon Ong <chengsoon.ong at tuebingen.mpg.de>
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- Chenghao Zhu <zhuchcn@gmail.com>
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- Chris Daley <https://github.com/chebizarro>
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- Chris Jackson <https://github.com/chrisjackson-pellicle>
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- Chris Lasher <chris.lasher at gmail.com>
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- Chris MacRaild <https://github.com/macraild>
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- Chris Mitchell <https://github.com/chrismit>
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- Chris Rands <https://github.com/chris-rands>
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- Chris Warth <https://github.com/cswarth>
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- Christiam Camacho <https://github.com/christiam>
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- Christian Balbin <christian at domain balbin.com>
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- Christian Brueffer <christian at domain brueffer.de>
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- Christian Zmasek <https://github.com/cmzmasek>
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- Chunlei Wu <https://github.com/newgene>
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- Claude Paroz <claude at two (as digit) xlibre dot net>
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- Connor McCoy <cmccoy at the dot org domain fhcrc>
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- Connor T. Skennerton <https://github.com/ctSkennerton>
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- Cymon J Cox <https://github.com/cymon>
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- Damien Goutte-Gattat <https://github.com/gouttegd>
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- Dan Vogel <dmv at domain andrew.cmu.edu>
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- Darcy Mason <https://github.com/darcymason>
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- David Born <https://github.com/hypostulate>
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- David Cain <gmail, david joseph cain>
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- David Koppstein <https://github.com/dkoppstein>
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- David Nicholson <https://github.com/danich1>
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- David Weisman <david.weisman at domain acm.org>
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- David Winter <https://github.com/dwinter>
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- Deepak Khatri <https://github.com/deepaklorkhatri007>
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- Devang Thakkar <https://github.com/devangthakkar>
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- Diana Jaunzeikare
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- Diego Brouard <diego at domain conysis.com>
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- Dimitris Kalafatis <https://github.com/dimi1729>
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- Edward Haigh <lambda at edwardhaigh dot com>
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- Edward Liaw <https://github.com/edliaw>
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- Ee Shan Shirley Liau <https://github.com/shirleyliau>
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- Emmanuel Noutahi <https://github.com/maclandrol>
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- Eric Rasche <https://github.com/erasche>
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- Eric Talevich <https://github.com/etal>
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- Erick Matsen <surname at fhcrc dot org>
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- Erik Cederstrand <https://github.com/ecederstrand>
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- Erik Weßels <https://github.com/BioNij>
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- Erik Whiting <https://github.com/erik-whiting>
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- Ernesto Rodriguez <https://github.com/netogallo>
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- Fabian Egli <https://github.com/fabianegli>
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- Fabio Zanini <https://github.com/iosonofabio>
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- Farhan Khan <https://github.com/BabaYaga1221>
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- Fei Qi <https://github.com/qifei9>
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- Foen Peng <https://github.com/foenpeng>
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- Francesco Gastaldello <https://github.com/Gasta88>
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- Francisco Pina-Martins <https://github.com/StuntsPT>
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- Franco Caramia <https://github.com/fcaramia>
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- Frank Kauff <https://github.com/frankkl>
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- François Coste <https://github.com/francoiscoste>
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- Frederic Sapet <https://github.com/FredericBGA>
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- Frederic Sohm <fsms at domain users.sourceforge.net>
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- Frederik Gwinner
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- Fredric Johansson <https://github.com/fredricj>
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- Fynn Freyer <https://github.com/FynnFreyer>
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- Fábio Madeira <https://github.com/biomadeira>
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- Gaetan Lehman <gaetan.lehmann at domain jouy.inra.fr>
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- Gavin E Crooks <https://github.com/gecrooks>
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- Gert Hulselmans <https://github.com/ghuls>
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- Gleb Kuznetsov <https://github.com/glebkuznetsov>
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- Gokcen Eraslan <https://github.com/gokceneraslan>
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- Harry Jubb <https://github.com/harryjubb>
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- Harry Zuzan <iliketobicycle at domain yahoo.ca>
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- Hector Martinez <https://github.com/hmarlo>
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- Hielke Walinga <https://github.com/hwalinga>
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- Hongbo Zhu <https://github.com/hongbo-zhu-cn>
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- Hussein Faara <https://github.com/hfaara18>
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- Hye-Shik Chang <perky at domain fallin.lv>
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- Iddo Friedberg <https://github.com/idoerg>
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- Igor S. Gerasimov <https://github.com/foxtran>
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- Ilya Flyamer <https://github.com/Phlya>
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- Ira Horecka <https://github.com/irahorecka>
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- Isaac Ellmen <https://github.com/Ellmen>
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- Ivan Antonov <https://github.com/vanya-antonov>
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- Jacek Śmietański <https://github.com/dadoskawina>
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- Jack Twilley <https://github.com/mathuin>
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- Jacob Beal <https://github.com/jakebeal>
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- Jacob Byerly <https://github.com/byerlyj>
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- Jakub Lipinski <https://github.com/jakublipinski>
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- James Baker <https://github.com/JamesABaker>
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- James Casbon <https://github.com/jamescasbon>
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- James Jeffryes <https://github.com/JamesJeffryes>
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- James Krieger <https://github.com/JamesMKrieger>
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- Jared Andrews <https://github.com/j-andrews7>
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- Jared Lumpe <https://github.com/jlumpe>
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- Jarrod Millman <https://github.com/jarrodmillman>
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- Jason A. Hackney <jhackney at domain stanford.edu>
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- Jeff Hussmann <first dot last at gmail dot com>
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- Jeffrey Chang <https://github.com/jchang>
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- Jeffrey Finkelstein <https://github.com/jfinkels>
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- Jens Thomas <https://github.com/linucks>
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- Jeremy LaBarge <https://github.com/biojerm>
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- Jeroen Van Goey <https://github.com/BioGeek>
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- Jerven Bolleman <https://github.com/JervenBolleman>
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- Jian-Long Huang <https://github.com/jlhg>
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- Jimmy O'Donnell <https://github.com/jimmyodonnell>
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- Joanna & Dominik Kasprzak
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- Joe Cora <https://github.com/JoeCora>
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- Joe Greener <https://github.com/jgreener64>
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- Joel Ibaceta <https://github.com/joelibaceta>
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- Joerg Schaarschmidt <https://github.com/schaarj>
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- Johann Visagie <wjv at domain cityip.co.za>
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- John Bradley <https://github.com/johnbradley>
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- John Kern <https://github.com/kern3020>
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- John Ma <https://github.com/JohnMCMa>
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- John Stilley <https://github.com/john-science>
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- Jonathan Taylor <jonathan dot taylor at utoronto dot ca>
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- Jordan Willis <https://github.com/jwillis0720>
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- Jose Blanca <https://github.com/JoseBlanca>
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- Josha Inglis <https://github.com/joshainglis>
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- Joshua Meyers <https://github.com/JoshuaMeyers>
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- João D Ferreira <https://github.com/jdferreira>
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- João Rodrigues <https://github.com/joaorodrigues>
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- João Vitor F Cavalcante <https://github.com/jvfe>
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- Judith Bernett <https://github.com/JudithBernett>
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- Jun Aruga <https://github.com/junaruga>
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- Juraj Szász <https:/github.com/sars1492>
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- Kai Blin <https://github.com/kblin>
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- Kamil Slowikowski <k no dot slowikowski at gmail dot com>
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- Karthikeyan Singaravelan <https://github.com/tirkarthi>
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- Katharine Lindner <katel at domain worldpath.net>
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- Kevin Jacobs <jacobs at bioinformed dot com>
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- Kevin Wu <https://github.com/kevinwuhoo>
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- Kian Ho <https://github.com/kianho>
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- Kiran Mukhyala <https://github.com/mukhyala>
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- Klaus Kopec <https://github.com/klauskopec>
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- Konrad Förstner <https://github.com/konrad>
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- Konstantin Okonechnikov <k.okonechnikov at domain gmail.com>
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- Konstantin Vdovkin <https://github.com/rtf_const>
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- Konstantinos Zisis <https://github.com/zisikons>
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- Kozo Nishida <https://github.com/kozo2>
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- Kristian Davidsen <https://github.com/krdav>
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- Kristian Rother <https://github.com/krother>
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- Kuan-Yi Li <https://github.com/kuanyili>
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- Kurt Graff <https://github.com/graph1994>
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- Kyle Ellrott <https://github.com/kellrott>
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- Leighton Pritchard <https://github.com/widdowquinn>
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- Lenna Peterson <ark first-name at gmail dot com>
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- Leonhard Heizinger <https://github.com/he-leon>
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- Leszek Pryszcz <https://github.com/lpryszcz>
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- Lewis A. Marshall <https://github.com/lewisamarshall>
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- Luca Monari <https://github.com/Lucandia>
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- Lucas Sinclair <https://github.com/xapple>
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- Lukasz Walejko <https://github.com/lwalejko>
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- Lyn H. <http://github.com/flaar94>
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- Manuel Lera Ramirez <https://github.com/manulera>
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- Manuel Nuno Melo <https://github.com/mnmelo>
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- Marc Colosimo <mcolosimo at domain mitre.org>
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- Marcin Magnus <https://github.com/mmagnus>
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- Marco Galardini <https://github.com/mgalardini>
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- Marie Crane <https://github.com/mariecrane>
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- Mark Amery <https://github.com/ExplodingCabbage>
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- Markus Piotrowski <https://github.com/MarkusPiotrowski>
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- Martin Thoma <https://martin-thoma.com/author/martin-thoma/>
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- Marton Langa <https://github.com/martonlanga>
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- Mateusz Korycinski <https://github.com/mkorycinski>
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- Matt Ruffalo <https://github.com/mruffalo>
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- Matt Shirley <https://github.com/mdshw5>
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- Matteo Sticco <https://github.com/sticken88>
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- Matteo Ugolotti <https://github.com/matteougolotti>
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- Maximilian Greil <https://github.com/MaxGreil>
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- Maximilian Peters <maximili.peters at mail.huji.ac.il>
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- Melissa Gymrek <https://github.com/mgymrek>
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- Meridia Jane Bryant <https://github.com/meridiajane>
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- Michael Hoffman <https://github.com/michaelmhoffman>
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- Michael M. <https://github.com/michaelfm1211>
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- Michael R. Crusoe <https://orcid.org/0000-0002-2961-9670>
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- Michal Kurowski <michal at domain genesilico.pl>
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- Michał J. Gajda <https://github.com/mgajda>
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- Michiel de Hoon <https://github.com/mdehoon>
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- Micky Yun Chan <https://github.com/michiboo>
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- Mike Moritz <https://github.com/mikepmikepm35>
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- Mike Poidinger <Michael.Poidinger at domain eBioinformatics.com>
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- Mikel Martinez Goikoetxea <https://github.com/Mikel-MG>
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- Milind Luthra <https://github.com/milindl>
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- morrme <https://github.com/morrme>
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- Mustafa Anil Tuncel <https://github.com/anilbey>
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- Nader Morshed <https://github.com/naderm>
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- Nate Sutton <https://github.com/nmsutton>
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- Nathan J. Edwards <nje5 at edu domain georgetown>
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- Neil P. <https://github.com/npars>
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- Nick Negretti <https://github.com/nimne>
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- Nicolas Fontrodona <https://github.com/NFontrodona>
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- Nigel Delaney <https://github.com/evolvedmicrobe>
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- Noam Kremen <https://github.com/noamkremen>
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- Oliver Wissett <https://github.com/OWissett>
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- Olivier Morelle <https://github.com/Oli4>
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- Oscar G. Garcia <https://github.com/oscarmaestre>
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- Osvaldo Zagordi <https://github.com/ozagordi>
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- Owen Solberg <https://github.com/odoublewen>
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- Pamela Russell <https://github.com/pamelarussell>
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- Pascal Schläpfer <https://github.com/pascalschlaepferprivate>
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- Patrick Kunzmann <https://github.com/padix-key>
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- Paul T. Bathen
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- Peter Bienstman <Peter.Bienstman at domain rug.ac.be>
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- Peter Cock <https://github.com/peterjc>
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- Peter Kerpedjiev <https://github.com/pkerpedjiev>
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- Peter Slickers <piet at domain clondiag.com>
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- Philip Bergstrom <https://github.com/phber>
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- Philip Capel <https://github.com/pcapel>
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- Phillip Garland <pgarland at gmail>
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- Pol Estecha <https://github.com/poleshe>
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- Rachel Stern <https://github.com/RachelStern20>
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- Ralf Stephan <https://github.com/rwst>
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- Rasmus Fonseca <https://github.com/RasmusFonseca>
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- rht <https://github.com/rht>
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- Ricardas Ralys
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- Richard Neher <https://github.com/rneher>
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- Rob Miller <https://github.com/rob-miller>
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- Robert Ernst <https://github.com/rernst>
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- Robert Sawicki <https://github.com/Battlesheepu>
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- Rodrigo Dorantes-Gilardi <https://github.com/rodogi>
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- Rona Costello <https://github.com/RonaCostello>
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- Rudolf Koopmann <https://github.com/koopmann>
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- Ryan Stecher <https://github.com/rystecher>
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- Sacha Laurent <https://github.com/Cashalow>
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- Saket Choudhary <https://github.com/saketkc>
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- Samuel Prince <https://github.com/drs>
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- Santeri Paajanen <https://github.com/paajasan>
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- Sean Aubin <https://github.com/seanny123>
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- Sean Davis <https://github.com/seandavi>
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- Sean Johnson <https://github.com/seanrjohnson>
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- Sean Workman <https://github.com/sean-workman>
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- Sebastian Bassi <https://about.me/bassi>
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- Sergei Lebedev <https://github.com/superbobry>
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- Sergio Valqui <https://github.com/svalqui>
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- Seth Sims <https://github.com/xzy3>
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- She Zhang <https://github.com/shz66>
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- Shoichiro Kawauchi <https://github.com/lacrosse91>
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- Shuichiro MAKIGAKI <https://github.com/shuichiro-makigaki>
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- Shyam Saladi <https://github.com/smsaladi>
|
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- Siddharta Morion <https://github.com/siddhartasr10>
|
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- Siong Kong <https://github.com/siongkong>
|
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- Sjoerd de Vries <https://github.com/sjdv1982>
|
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- Soroush Saffari <https://github.com/sorsaffari>
|
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- Sourav Singh <https://github.com/souravsingh>
|
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- Spencer Bliven <https://github.com/sbliven>
|
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- Stefans Mezulis <https://github.com/StefansM>
|
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- Steve Bond <https://github.com/biologyguy>
|
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- Steve Marshall <https://github.com/hungryhoser>
|
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- Stuart Nelis <https://github.com/biostu24>
|
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- Sujan Dulal <https://github.com/Dsujan>
|
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- Sunhwan Jo <https://github.com/sunhwan>
|
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- Suresh Panneerselvam <https://github.com/Amrithasuresh>
|
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- Suyash Gupta <https://github.com/sgalpha01>
|
|
- Tarcisio Fedrizzi <https://github.com/hcraT>
|
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- Tarjei Mikkelsen <https://github.com/tmikkelsen>
|
|
- Ted Cybulski <https://github.com/tcyb>
|
|
- Terry Jones <https://github.com/terrycojones>
|
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- Thomas Hamelryck <thamelry at domain binf.ku.dk>
|
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- Thomas Holder <https://github.com/speleo3>
|
|
- Thomas Rosleff Soerensen <rosleff at domain mpiz-koeln.mpg.de>
|
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- Thomas Schmitt <https://github.com/wurstbonbon>
|
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- Thomas Sicheritz-Ponten <thomas at domain cbs.dtu.dk>
|
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- Tiago Antao <https://github.com/tiagoantao>
|
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- Tianyi Shi <https://github.com/TianyiShi2001>
|
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- Tim Burke <https://github.com/tipabu>
|
|
- Tom Eulenfeld <https://github.com/trichter>
|
|
- Tommy Carstensen <https://github.com/tommycarstensen>
|
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- Tyghe Vallard <https://github.com/necrolyte2>
|
|
- Tyrone Lee <https://github.com/lee-t>
|
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- Uri Laserson <https://github.com/laserson>
|
|
- Uwe Schmitt <https://github.com/uweschmitt>
|
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- Valentin Vareškić <https://github.com/valentin994>
|
|
- Veronika Berman <https://github.com/NikiB>
|
|
- Victor Lin <https://github.com/victorlin>
|
|
- Vini Salazar <https://github.com/vinisalazar>
|
|
- Vishesh Soni <https://github.com/vishesh2802>
|
|
- Vladislav Kuznetsov <https://github.com/vladkuz-vk>
|
|
- Walter Gillett <https://github.com/wgillett>
|
|
- Wayne Decatur <https://github.com/fomightez>
|
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- Wibowo Arindrarto <https://github.com/bow>
|
|
- Will Tyler <https://github.com/Will-Tyler>
|
|
- Wolfgang Schueler <wolfgang at domain proceryon.at>
|
|
- Xiaoyu Zhuo <https://github.com/xzhuo>
|
|
- Yair Benita <Y.Benita at domain pharm.uu.nl>
|
|
- Yanbo Ye <https://github.com/lijax>
|
|
- Yasar L. Ahmed <https://github.com/pyahmed>
|
|
- Yen-Chung Chen <https://github.com/chenyenchung>
|
|
- Yi Hsiao <https://github.com/hsiaoyi0504>
|
|
- Yiming Qu <https://github.com/whatever60>
|
|
- Yogesh Kulkarni <https://https://github.com/yogeshhk>
|
|
- Yu Huang <krocea at domain yahoo.com.cn>
|
|
- Yves Bastide <ybastide at domain irisa.fr>
|
|
- Zachary Sailer <https://github.com/Zsailer>
|
|
- Zaid Ur-Rehman <https://github.com/zaidurrehman>
|
|
- Zheng Ruan <https://github.com/zruan>
|