mirror of
https://github.com/biopython/biopython.git
synced 2025-10-20 13:43:47 +08:00
0a19feed25
Note the last 32bit Windows MiniConda was for Python 3.9, this means we will be dropping testing on 32bit Windows with these changes.
56 lines
1.8 KiB
YAML
56 lines
1.8 KiB
YAML
# This is a special configuration file to run tests on Circle-CI via
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# GitHub notifications when changes are committed.
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#
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# This file is not intended for end users of Biopython.
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#
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# This uses a CircleCI provided Python image, see
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# https://circleci.com/developer/images/image/cimg/python
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version: 2.1
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orbs:
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codecov: codecov/codecov@5.0.3
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jobs:
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build:
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docker:
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- image: cimg/python:3.10
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steps:
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- checkout
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- run:
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name: Dependencies
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command: |
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python --version
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pip install -r .circleci/requirements-sphinx.txt
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pip install coverage numpy scipy mmtf-python mysqlclient mysql-connector-python rdflib networkx matplotlib
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echo "Python dependencies installed"
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- run:
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name: Installation
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command: |
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python setup.py sdist --formats=gztar
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echo "Built tar-ball, will now use that to test manifest..."
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tar -zxvf dist/biopython-*.tar.gz
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cd biopython-*/
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python setup.py bdist_wheel
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echo "Built wheel and installing it..."
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python -m pip install dist/biopython-*.whl
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echo "Biopython should now be installed"
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- run:
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name: Sphinx
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command: |
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make -C Doc/ html
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- run:
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name: Deploy Sphinx documentation
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command: |
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bash .github/deploy_docs.sh
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- run:
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name: Test
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command: |
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# Use the unzipped tar-ball where built wheel
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cd biopython-*/Tests/
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coverage run --source Bio,BioSQL --source Bio,BioSQL run_tests.py --offline
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echo "Tests run"
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coverage xml
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- codecov/upload:
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upload_name: CircleCI
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disable_search: true
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files: biopython-*/Tests/coverage.xml
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