flaar94 e6d24c595a - Implemented lazy _per_letter_annotation construction to speed up SeqRecord initialization (if you directly access the protected _per_letter_annotation, be aware that it can now be None. This corresponds to an empty dict) ...

- Added private alternative constructor SeqRecord._from_validated(...). This avoids type and length checks in cases when these have already been done
- Modified SeqRecord seq and letter_annotation attributes to use decorator-based formatting, and included more type annotations
- Modified sam parser to explicitly construct a new SeqRecord to remove the deepcopy bottleneck
- Modified FastaIterator, QualityIO, and SffIO parsers to use _from_validated to redundant checks and make code cleaner
- Added explicit checks in SeqRecord methods for cases when Seq is None, and specific error messages for those cases

2024-09-23 14:20:26 +01:00

..

__init__.py

Dual license BioSQL/*.py [ci skip]

2018-04-13 12:07:24 +01:00

BioSeq.py

- Implemented lazy _per_letter_annotation construction to speed up SeqRecord initialization (if you directly access the protected _per_letter_annotation, be aware that it can now be None. This corresponds to an empty dict)

2024-09-23 14:20:26 +01:00

BioSeqDatabase.py

Apply isort (forcing single lines, not sorting by type) via ruff

2024-06-26 15:31:39 +09:00

DBUtils.py

pep 585 typing rewrites etc using pyupgrade 3.16.0

2024-06-27 09:55:07 +09:00

Loader.py

Apply isort (forcing single lines, not sorting by type) via ruff

2024-06-26 15:31:39 +09:00

py.typed

Include py.typed declaration files for type annotation

2023-08-11 15:57:43 +01:00