mdehoon 41b6f22574 Add a parser for 2bit files to Bio.SeqIO (#3388) ...

* add test script

* add test files

* done

* travis

* travis being obnoxious

* remove unnecessary str support

* avoid using PyUnicode_New as it's not in pypy

* add some documentation

* add some documentation

* move to a comment to travis can't bitch about it

* move to a comment to travis can't bitch about it

* documentation update

* fix warning

* Let's see why 32bit windows is not happy

* Let's see why 32bit windows is not happy

* check the file descriptor in advance; on Windows, lseek with a closed file descriptor will by default close the application

* lseek is fubar on windows

* lseek and read apparently are fubar on Windows. Use Python to seek/read, and numpy to keep the code reasonably fast

* deal with closed files

* travis

* more inane stuff from Travis

* weird

* reverting previous change to the tutorial text

* reverting changes to test_SeqIO.py; these are not needed anymore now that twoBit file reading is done via Python

* improving speed

* using C code for 2bit to sequence conversion

* adding missing C code

* expand exception

* accept formats I and L

* release buffer

* travis

* windows

* private

* NEWS

2020-12-04 00:28:39 +09:00

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