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$ ruff check --fix --select=I \ --config=lint.isort.force-single-line=true \ --config=lint.isort.order-by-type=false \ BioSQL/ Bio/ Tests/ Scripts/ Doc/ setup.py Using ruff version 0.4.10
36 lines
1.1 KiB
Python
36 lines
1.1 KiB
Python
# Copyright 2017 by Peter Cock. All rights reserved.
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# This file is part of the Biopython distribution and governed by your
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# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
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# Please see the LICENSE file that should have been included as part of this
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# package.
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"""Tests for mmtf online module."""
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import unittest
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import warnings
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import requires_internet
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from Bio.PDB.mmtf import MMTFParser
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from Bio.PDB.PDBExceptions import PDBConstructionWarning
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requires_internet.check()
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class OnlineMMTF(unittest.TestCase):
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"""Online tests for the MMTF code."""
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def test_from_url(self):
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"""Check parser can fetch a record from its PDB ID."""
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parser = MMTFParser()
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with warnings.catch_warnings():
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warnings.simplefilter("ignore", PDBConstructionWarning)
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struct = parser.get_structure_from_url("4ZHL")
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atoms = list(struct.get_atoms())
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self.assertEqual(len(atoms), 2080)
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if __name__ == "__main__":
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runner = unittest.TextTestRunner(verbosity=2)
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unittest.main(testRunner=runner)
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