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61 lines
2.1 KiB
Python
61 lines
2.1 KiB
Python
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
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# This code is part of the Biopython distribution and governed by its
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# license. Please see the LICENSE file that should have been included
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# as part of this package.
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"""Tests for SearchIO fasta-m10 indexing."""
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import os
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import unittest
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from search_tests_common import CheckIndex
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class FastaM10IndexCases(CheckIndex):
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fmt = "fasta-m10"
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def test_output_002(self):
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"""Test fasta-m10 indexing, fasta34, multiple queries."""
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filename = os.path.join("Fasta", "output002.m10")
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self.check_index(filename, self.fmt)
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def test_output_001(self):
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"""Test fasta-m10 indexing, fasta35, multiple queries."""
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filename = os.path.join("Fasta", "output001.m10")
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self.check_index(filename, self.fmt)
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def test_output_005(self):
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"""Test fasta-m10 indexing, ssearch35, multiple queries."""
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filename = os.path.join("Fasta", "output005.m10")
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self.check_index(filename, self.fmt)
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def test_output_008(self):
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"""Test fasta-m10 indexing, tfastx36, multiple queries."""
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filename = os.path.join("Fasta", "output008.m10")
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self.check_index(filename, self.fmt)
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def test_output_009(self):
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"""Test fasta-m10 indexing, fasta36, multiple queries."""
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filename = os.path.join("Fasta", "output009.m10")
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self.check_index(filename, self.fmt)
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def test_output_010(self):
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"""Test fasta-m10 indexing, fasta36, single query, no hits."""
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filename = os.path.join("Fasta", "output010.m10")
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self.check_index(filename, self.fmt)
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def test_output_011(self):
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"""Test fasta-m10 indexing, fasta36, single query, hits with single hsp."""
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filename = os.path.join("Fasta", "output011.m10")
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self.check_index(filename, self.fmt)
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def test_output_012(self):
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"""Test fasta-m10 indexing, fasta36, single query with multiple hsps."""
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filename = os.path.join("Fasta", "output012.m10")
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self.check_index(filename, self.fmt)
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if __name__ == "__main__":
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runner = unittest.TextTestRunner(verbosity=2)
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unittest.main(testRunner=runner)
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