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$ ruff check --fix --select=I \ --config=lint.isort.force-single-line=true \ --config=lint.isort.order-by-type=false \ BioSQL/ Bio/ Tests/ Scripts/ Doc/ setup.py Using ruff version 0.4.10
58 lines
1.7 KiB
Python
58 lines
1.7 KiB
Python
# Copyright 2017 by Peter Cock. All rights reserved.
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# This code is part of the Biopython distribution and governed by its
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# license. Please see the LICENSE file that should have been included
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# as part of this package.
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"""Testing Bio.ExPASy online code."""
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import unittest
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import requires_internet
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# We want to test these:
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from Bio import ExPASy
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# In order to check any records returned
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from Bio.ExPASy import Prodoc
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from Bio.ExPASy import Prosite
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requires_internet.check()
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class ExPASyOnlineTests(unittest.TestCase):
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"""Test ExPASy online resources."""
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def test_prosite_raw(self):
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with ExPASy.get_prosite_raw("PS00001") as handle:
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record = Prosite.read(handle)
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self.assertEqual(record.accession, "PS00001")
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self.assertEqual(record.name, "ASN_GLYCOSYLATION")
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def test_prodoc_raw(self):
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with ExPASy.get_prosite_raw("PDOC00001") as handle:
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record = Prodoc.read(handle)
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self.assertEqual(record.accession, "PDOC00001")
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def test_prosite_html(self):
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with ExPASy.get_prosite_entry("PS00001") as handle:
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html = handle.read()
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self.assertEqual(
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handle.url,
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"https://prosite.expasy.org/cgi-bin/prosite/get-prosite-entry?PS00001",
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)
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self.assertIn("<title>PROSITE - PS00001</title>", html)
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def test_prodoc_html(self):
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with ExPASy.get_prodoc_entry("PDOC00001") as handle:
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html = handle.read()
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self.assertEqual(
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handle.url,
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"https://prosite.expasy.org/cgi-bin/prosite/get-prodoc-entry?PDOC00001",
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)
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self.assertIn("{PS00001; ASN_GLYCOSYLATION}", html)
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if __name__ == "__main__":
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runner = unittest.TextTestRunner(verbosity=2)
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unittest.main(testRunner=runner)
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