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1172869397
* enable handling of <ligand> tags in UniProt XML files * test parsing of <ligand> in UniProt XML * add name to CONTRIB.rst * format with black * enable capture of multiple ligands from uniprot xml file. update tests accordingly * add mock UniProt XML file with multiple ligand tags per feature * test for correct len of all ligands list and multiple ligands per feature
SWISSPROT TEST DATA FILES
=========================
This directory contains various data files for testing the
SwissProt-related code in Biopython.
SPROT TEST FILES
----------------
ID Version SPID Comments
sp001 38 N33_HUMAN DR buried within comments
sp002 38 CSP_MOUSE broken RC line
sp003 37 143E_HUMAN
sp004 38 NDOA_PSEPU broken RC line
sp005 38 NU3M_BALPH broken RC line
sp006 37 TCMO_STRGA comment with no topic
sp007 39 CLD1_HUMAN broken RX line, broken DR lines
(from katel@worldpath.net)
sp008 39 1A02_HUMAN contains 2 AC lines
sp009 CHS3_BROFI contains an OX line
sp010 5H4_HUMAN RX line has multiple '='
sp011 LSHR_RAT broken VARSPLIC in feature table
sp012 TrEMBL 16.0 Q9Y736 RC line has too many '='
sp013 TrEMBL 16.0 P82909 reference 2 missing RL line
sp014 SP 39.14 PSBL_ORYSA OX spans 2 lines
sp015 IPI IPI00383150.2 Only two DT lines, strange format of DT lines
Dot versions in DT lines, no DE line
sp016 FOS_HUMAN New PE line from UniProtKB rel 12.0, 24-Jul-2007
P84001.xml Mass spec struct comment with unknown loc
KEYWLIST TEST FILE
------------------
ID Version
keywlist.txt 55.5 of 10-Jun-2008; most records were removed from this
file to reduce its size and create a manageable test file.