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39 lines
2.1 KiB
Plaintext
39 lines
2.1 KiB
Plaintext
# STOCKHOLM 1.0
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#=GF AC RF04178
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#=GF ID BTnc005
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#=GF DE Bacteroides sRNA BTnc005
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#=GF AU Prezza, G
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#=GF AU Ryan, D
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#=GF AU Mädler, G
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#=GF AU Barquist, L; 0000-0003-4732-2667
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#=GF AU Westermann, A
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#=GF SE Published; PMID:32678091;
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#=GF SS Published; PMID:32678091;
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#=GF GA 174.80
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#=GF TC 179.30
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#=GF NC 174.30
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#=GF TP Gene; sRNA;
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#=GF BM cmbuild -F CM SEED
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#=GF CB cmcalibrate --mpi CM
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#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 742849.287494 CM SEQDB
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#=GF DR SO; 0000655; ncRNA;
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#=GF RN [1]
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#=GF RM 32678091
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#=GF RT A high-resolution transcriptome map identifies small RNA regulation of
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#=GF RT metabolism in the gut microbe Bacteroides thetaiotaomicron.
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#=GF RA Ryan D, Jenniches L, Reichardt S, Barquist L, Westermann AJ
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#=GF RL Nat Commun. 2020;11:3557.
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#=GF CC An uncharacterized small RNA discovered in Bacteroides thetaiotaomicron
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#=GF CC [1]
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#=GF WK Bacteroides_thetaiotaomicron_sRNA
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#=GF SQ 3
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AE015928.1/72774-72978 GUAAGUAAAAGUGUAACAGGAAGAAAGUUGCAGCAUAUAUGCGGUGAAUUAUGCGGUGUCAUAGGAAUUGAGGAUUUAUGUAAGAUGCUGAUAAUGAGUAAGGAACCUUAAAGUUAAUCGUUCCCUGUCUCUCCGCAGAACCUACUGGACAAAACAGGACAGUAAGUGGACAAAAACCUACAAAUCAGC-GAUUUGUAGGUUUUUU
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CP000139.1/2819055-2819247 AAAAGUAAGAGUGUAACAGGAAGAAAGUUGCAGCAUAUACGCGGUGAAUUAUUCGGUGUCAUAGGAGUAGAGUCUUUUGGUAAGAUGCUGAUAAUGAGUAGGGGAGAUGAAAGUUAAUCGUUCCCUGUCUCUCCGCUGG---------AAAGAAUUGCAAAACAA--AGA-AAAUCCCUGUAAAUUAAU-ACUUUACGGGGAUUUU
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FP929033.1/4930704-4930908 GUAAGUAAAAGUGUAACAGGAAGAAAGUUGCAGCAUAUAUGCGGUGAAUUAUGCGGUGUCAUAGGAAUUGAGGAUUUAUGUAAGAUGCUGAUAAUGAGUAAGGAACCUUAAAGUUAAUCGUUCCCUGUCUCUCCGCUGAACUAUCCGGACAAAACCGGGCAAUGAACAGUCAAA-UCCCACAAAUUCAAUGAUUUGUGGGACUUUU
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#=GC SS_cons :::::::::::<<<<<<_________>>>>>>,,,,,,,,((((,,,<<<<<-<<<<<<<----<<<_______>>>------>>>>>>>>>>>><<<<<-<<<<_______________>>>>->>->>>,))))---------------------------------------<<<<<<<<<<<____>>>>>>>>>>>:::::
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#=GC RF guAAGUAAaAGuGuaaCAGGAAGAAAGuugCaGCAUAUAuGCGGUGAauuaugCgGuguCAUAGgaaUuGAGgauuuauGUAAGaugCuGauaauGaGuaaGGaaccUuAAAGUUAAUCGuuCCCugUCuCUCCGCuGaACuaaCuGGAcAaAAcuGgacAauaAauaGaCAAAacCCcgcaaaucaau.gauuugcgGGguUUUU
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//
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