mdehoon 58f7786acc Entrez parser fix for #3734 (#3738) ...

* fix for #3734

* fix for #3734

* added DTDs

* style

* black

2021-09-18 06:34:34 +09:00

..

biosample.xml

raise a ValueError in Bio.Entrez if the XML data do not include a DTD or XML Schema (#2820)

2020-03-26 09:46:47 +09:00

efetch_pmc.xml

Entrez parser fix for #3734 (#3738)

2021-09-18 06:34:34 +09:00

efetch_schemas.xml

added a test (#1642)

2018-05-08 08:14:23 +09:00

egquery1.xml

More tests.

2008-04-21 11:53:45 +00:00

egquery2.xml

More tests.

2008-04-21 11:53:45 +00:00

einfo1.xml

Adding a unit test for Bio.Entrez. Currently only testing the EInfo parser.

2008-04-16 10:57:44 +00:00

einfo2.xml

Adding a unit test for Bio.Entrez. Currently only testing the EInfo parser.

2008-04-16 10:57:44 +00:00

einfo3.xml

Adding a test for an EUtils result that is inconsistent with the DTD

2010-09-19 22:31:11 +09:00

einfo4.xml

only accept valid XML; raise a more informative error message if the input data are not in XML format, or if the XML seems to be corrupted

2010-09-19 23:09:25 +09:00

elink1.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink2.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink3.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink4.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink5.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink6.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink7.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

elink8.xml

Make sure all Entrez tests pass

2013-12-24 02:08:46 +09:00

epost1.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

epost2.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

epost3.xml

One more test, using NCBI's advice.

2008-04-23 10:27:13 +00:00

esearch1.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch2.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch3.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch4.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch5.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch6.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch7.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

esearch8.xml

More tests for Bio.Entrez.

2008-04-17 11:30:58 +00:00

espell.xml

More tests.

2008-04-21 11:53:45 +00:00

esummary1.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary2.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary3.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary4.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary5.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary6.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary7.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary8.xml

Adding more test cases for Bio.Entrez.

2008-04-18 11:27:00 +00:00

esummary9.xml

return None if undefined (#1968)

2019-03-16 16:24:15 +09:00

journals.xml

Raise the appropriate error if the initial XML declaration is missing (for example, HTML or broken XML)

2010-10-03 22:45:07 +09:00

ncbi_mim.xml

Adding tests for efetch.

2008-04-24 15:15:13 +00:00

nucleotide1.xml

Adding more tests and DTDs for EFetch.

2008-05-24 08:14:30 +00:00

nucleotide2.xml

Adding more tests and DTDs for EFetch.

2008-05-24 08:14:30 +00:00

protein.xml

Adding more tests and DTDs for EFetch.

2008-05-24 08:14:30 +00:00

pubmed1.xml

Adding a parser for XML results returned by EFetch from pubmed.

2008-05-01 10:49:06 +00:00

pubmed2.xml

Adding a parser for XML results returned by EFetch from pubmed.

2008-05-01 10:49:06 +00:00

pubmed3.html

Raise the appropriate error if the initial XML declaration is missing (for example, HTML or broken XML)

2010-10-03 22:45:07 +09:00

pubmed4.xml

Entrez parser fix (#1640)

2018-05-07 02:39:52 +09:00

pubmed5.xml

adding test case

2018-10-02 10:14:07 +01:00

pubmed6.xml

Fix for issue1801: Add MathML, Namespace capabilities to Bio.Entrez (#1823)

2018-10-07 01:06:18 +09:00

pubmed7.xml

Entrez parser fix (#2056)

2019-05-13 23:15:07 +09:00

taxonomy.xml

More tests.

2008-04-21 11:53:45 +00:00