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* update * update --------- Co-authored-by: Michiel de Hoon <mdehoon@madpc2s-MacBook-Pro.local>
BLAST TEST DATA FILES ===================== This directory contains various data files for testing the BLAST-related code in Biopython. All files are grouped by BLAST release version, from the most recent first. BLAST 2.2.28+ ------------- tab_2228_tblastn_001 single query, custom columns: evalue sallseqid qseqid, commented tab_2228_tblastx_001 single query with all columns (including new ones added in this version), commented BLAST 2.2.26+ ------------- tab_2226_tblastn_001 multiple queries tab_2226_tblastn_002 single query, no hits tab_2226_tblastn_003 single query, hits @ single hsp tab_2226_tblastn_004 single query, multiple hsps per hit present tab_2226_tblastn_005 multiple queries, commented tab_2226_tblastn_006 single query, no hits, commented tab_2226_tblastn_007 single query, hits @ single hsp, commented tab_2226_tblastn_008 single query, multiple hsps per hit present, commented tab_2226_tblastn_009 multiple queries with custom columns tab_2226_tblastn_010 multiple queries with custom columns, commented tab_2226_tblastn_011 multiple queries with all columns, commented tab_2226_tblastn_012 multiple quries, remote search, standard columns, commented tab_2226_tblastn_013 single query, custom columns: qsseq std sseq xml_2226_blastn_001.xml multiple queries xml_2226_blastn_002.xml single query, no hits xml_2226_blastn_003.xml single query, hits @ single hsp xml_2226_blastn_004.xml single query, multiple hsps per hit present xml_2226_blastn_005.xml multiple queries, remote search on NCBI's database xml_2226_blastn_006.xml single query, against a database with duplicate entries xml_2226_blastp_001.xml multiple queries xml_2226_blastp_002.xml single query, no hits xml_2226_blastp_003.xml single query, hits @ single hsp xml_2226_blastp_004.xml single query, multiple hsps per hit present xml_2226_blastp_005.xml multiple queries, remote search on NCBI's database xml_2226_blastx_001.xml multiple queries xml_2226_blastx_002.xml single query, no hits xml_2226_blastx_003.xml single query, multiple hsps per hit present xml_2226_blastx_004.xml multiple queries, remote search on NCBI's database xml_2226_tblastn_001.xml multiple queries xml_2226_tblastn_002.xml single query, no hits xml_2226_tblastn_003.xml single query, hits @ single hsp xml_2226_tblastn_004.xml single query, multiple hsps per hit present xml_2226_tblastn_005.xml multiple queries, remote search on NCBI's database xml_2226_tblastx_001.xml multiple queries xml_2226_tblastx_002.xml single query, no hits xml_2226_tblastx_003.xml single query, multiple hsps per hit present xml_2226_tblastx_004.xml multiple queries, remote search on NCBI's database BLAST 2.2.22+ ------------- xml_2222_blastp_001.xml n/a xml_2222_blastx_001.xml multiple queries BLAST 2.2.18+ ------------- xml_2218_blastp_001.xml n/a xml_2218_blastp_002.xml n/a BLAST 2.2.18 (Legacy) --------------------- xml_2218L_blastp_001.xml n/a xml_2218L_rpsblast_001.xml n/a BLAST 2.2.12 (Legacy) --------------------- xml_2212L_blastn_001.xml n/a xml_2212L_blastp_001.xml n/a xml_2212L_blastx_001.xml n/a xml_2212L_tblastn_001.xml n/a xml_2212L_tblastx_001.xml n/a Mock files for mocked qblast searches ------------------------------------- This are minimal xml/html files mimicking NCBI qblast responses for our mocked online tests in test_NCBI_qlast_mock.py: mock_actin.xml mock_disco.xml mock_orchid.xml mock_pcr.xml mock_short_empty.xml mock_short_result.xml mock_wait.html