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Backwards compatibility with version 3 is maintained. Test cases for package Affy are added. Both new and old code is now tested. affy_v4_example.CEL is added. It is artifically generated and small. See also: http://www.affymetrix.com/estore/support/developer/powertools/changelog/gcos-agcc/cel.html.affx Which explains: Version 3 is generated by the MAS software. This was also known as the ASCII version. Version 4 is generated by the GCOS software. This was also known as the binary or XDA version. Command Console version 1 is generated by the Command Console software. This is stored in the Command Console "generic" data file format. (Squashed commit of pull reqesut #1011)