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70 lines
2.5 KiB
Plaintext
70 lines
2.5 KiB
Plaintext
# MANIFEST.in
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#
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# This tells distutils what files to distribute.
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include CONTRIB.rst
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include LICENSE.rst
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include NEWS.rst
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include README.rst
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include DEPRECATED.rst
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include CONTRIBUTING.rst
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include MANIFEST.in
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recursive-include Scripts * # Include scripts.
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recursive-include Tests * # Include regression tests.
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recursive-include Bio *.c # Include all .c files.
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recursive-include Bio *.h # Include headers to compile .c files.
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recursive-include Doc *.tex # Include relevant documentation.
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recursive-include Doc *.pdf
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recursive-include Doc *.py
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recursive-include Doc *.html
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recursive-include Doc *.fasta
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recursive-include Doc Makefile
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recursive-include Doc/examples *.aln
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recursive-include Doc/examples *.faa
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recursive-include Doc/examples *.xpk
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recursive-include Doc/examples *.gbk
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recursive-include Doc/examples *.sth
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recursive-include Doc/examples *.bgz
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recursive-include Doc/examples *.xml
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recursive-include Doc/examples *.psl
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recursive-include Doc/examples *.dnd
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recursive-include Doc/examples *.csv
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recursive-include Doc/images *.png
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recursive-include Doc/images *.jpg # e.g. the old logo for the Tutorial
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recursive-include Doc/images *.svg # e.g. the new logo for the Tutorial
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include Doc/examples/ls_orchid.gbk.gz
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include Doc/examples/ls_orchid.gbk.bz2
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include Doc/examples/ec_5.4.2.2.txt
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exclude Doc/_build/
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# Include Bio.Cluster, Bio.Affy, Bio.phenotype
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# Note setup.py will only install these if Numpy is installed.
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recursive-include Bio/Cluster *.py
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recursive-include Bio/Affy *.py
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recursive-include Bio/Align *.py
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recursive-include Bio/phenotype *.py
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exclude Tests/Graphics/* # Exclude test files generated by reportlab.
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include Tests/Graphics/README # But include README file to make directory!
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# Exclude archive of sample Gck files (automatically downloaded during
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# tests but that we cannot redistribute).
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exclude Tests/Gck/DGVC_GCK.zip
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# e.g. from running the unit tests, or PyPy, etc
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global-exclude *.pyc *.pyo *.py{} *.py-e
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# Include Python type annotation declarations, see PEP-561
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include Bio/py.typed
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include BioSQL/py.typed
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# Make sure the required data files are included.
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include Bio/Entrez/DTDs/*.dtd # Include DTD files for Entrez
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include Bio/Entrez/DTDs/*.ent # Include DTD files for Entrez
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include Bio/Entrez/DTDs/*.mod # Include DTD files for Entrez
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include Bio/Entrez/XSDs/*.xsd # Include XSD files for Entrez
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include Bio/Align/substitution_matrices/data/* # Include precalculated substitution matrices
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exclude Bio/Align/substitution_matrices/data/README.txt
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