Testing indexing FASTQ file with zero length record (issue #269)

Example file from Sam Hunter, included in his bug report.
This commit is contained in:
peterjc
2013-12-12 16:42:55 +00:00
parent aa538563eb
commit e808d99b81
2 changed files with 21 additions and 0 deletions

View File

@ -0,0 +1,20 @@
@EMWLCP001DET6P
CCCATCATTTATAATTTTAACACGTCCTAGCGTGTAATCTACGGTAT
+
NA+<?;8M@*?=C4UE6'J<:=>??K=????;>?>K==????K>?>;
@EMWLCP001CB6TP
CAGAGTTGCAAGTGCCGGTAATCGCCCTCTCACAGCTGAACCGTGGGCCAGAGCAGCGAGCCGACAAGATGCCGGCCCTGAGCGACCTGCGTGAGTCGGGTTCGCTCGAGCAAGACGCCGACCTAGT
+
?;??>K>?>K>=??K>K>?K>?><RD1??????><?>>K>K>>?RD1K>??>>??????>J=??<K>?><=K>J=PC.??>?>?=I<?>=>>?;=<?PC.J=>:=?;>?>?K=>4<<K=>>F8>>?=
@EMWLCP001DHOHL
+
@EMWLCP001C1YIG
CAGAGGCAAAATGAGAAGGCAGAAAGGGATAGGAGCTG
+
>??;I;?TD4%>>>?E7G9=>?PC.PC.<??K>>?>?K
@EMWLCP001AOVPY
CAGTCGGACAGGCGCAGTTCATGGCGGCGCGAGCACACCGTTTCGCCCAGGTAGACGATGTCCACAGG
+
>>><?K>???K>??>??K><=?K>?K>????=<???<K=>RD1><RD1?K>>?=>?=????K>?>>K=

View File

@ -380,6 +380,7 @@ tests = [
("Quality/sanger_faked.fastq", "fastq-sanger", generic_dna),
("Quality/solexa_faked.fastq", "fastq-solexa", generic_dna),
("Quality/illumina_faked.fastq", "fastq-illumina", generic_dna),
("Quality/zero_length.fastq", "fastq", generic_dna),
("EMBL/epo_prt_selection.embl", "embl", None),
("EMBL/U87107.embl", "embl", None),
("EMBL/TRBG361.embl", "embl", None),