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Testing indexing FASTQ file with zero length record (issue #269)
Example file from Sam Hunter, included in his bug report.
This commit is contained in:
20
Tests/Quality/zero_length.fastq
Normal file
20
Tests/Quality/zero_length.fastq
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@ -0,0 +1,20 @@
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@EMWLCP001DET6P
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CCCATCATTTATAATTTTAACACGTCCTAGCGTGTAATCTACGGTAT
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+
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NA+<?;8M@*?=C4UE6'J<:=>??K=????;>?>K==????K>?>;
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@EMWLCP001CB6TP
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CAGAGTTGCAAGTGCCGGTAATCGCCCTCTCACAGCTGAACCGTGGGCCAGAGCAGCGAGCCGACAAGATGCCGGCCCTGAGCGACCTGCGTGAGTCGGGTTCGCTCGAGCAAGACGCCGACCTAGT
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+
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?;??>K>?>K>=??K>K>?K>?><RD1??????><?>>K>K>>?RD1K>??>>??????>J=??<K>?><=K>J=PC.??>?>?=I<?>=>>?;=<?PC.J=>:=?;>?>?K=>4<<K=>>F8>>?=
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@EMWLCP001DHOHL
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+
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@EMWLCP001C1YIG
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CAGAGGCAAAATGAGAAGGCAGAAAGGGATAGGAGCTG
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+
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>??;I;?TD4%>>>?E7G9=>?PC.PC.<??K>>?>?K
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@EMWLCP001AOVPY
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CAGTCGGACAGGCGCAGTTCATGGCGGCGCGAGCACACCGTTTCGCCCAGGTAGACGATGTCCACAGG
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+
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>>><?K>???K>??>??K><=?K>?K>????=<???<K=>RD1><RD1?K>>?=>?=????K>?>>K=
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@ -380,6 +380,7 @@ tests = [
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("Quality/sanger_faked.fastq", "fastq-sanger", generic_dna),
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("Quality/solexa_faked.fastq", "fastq-solexa", generic_dna),
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("Quality/illumina_faked.fastq", "fastq-illumina", generic_dna),
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("Quality/zero_length.fastq", "fastq", generic_dna),
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("EMBL/epo_prt_selection.embl", "embl", None),
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("EMBL/U87107.embl", "embl", None),
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("EMBL/TRBG361.embl", "embl", None),
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