frozenleaves/biopython
1
0
Fork 0
mirror of https://github.com/biopython/biopython.git synced 2025-10-20 21:53:47 +08:00
Code Issues Packages Projects Releases Wiki Activity

Tests names standardization

Browse Source
This commit is contained in:
Samuel Prince
2024-09-20 08:10:51 -04:00
committed by Wibowo Arindrarto
parent 35a3324e21
commit b7f1782578
3 changed files with 15 additions and 15 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
Tests/test_SearchIO_infernal_tab.py
View File

@ -32,7 +32,7 @@ class CmscanCases(unittest.TestCase):
"""Test parsing cmscan output."""
def test_cmscan_mq_mm(self):
"""Test parsing infernal-tab, cmscan, multiple queries, multiple match, one hsp, default format (IRES_5S_U2_Yeast)"""
"""Test parsing infernal-tab, cmscan, multiple queries, multiple hit, one hsp, default format (IRES_5S_U2_Yeast)"""
tab_file = get_file("cmscan_115_IRES_5S_U2_Yeast.tbl")
qresults = parse(tab_file, FMT)
counter = itertools.count(start=1)
@ -159,7 +159,7 @@ class CmscanCases(unittest.TestCase):
def test_cmscan_mq_mm_fmt2(self):
"""Test parsing infernal-tab, cmscan, multiple queries, multiple match, one hsp, fmt 2 (IRES_5S_U2_Yeast_fmt_2)"""
"""Test parsing infernal-tab, cmscan, multiple queries, multiple hit, one hsp, fmt 2 (IRES_5S_U2_Yeast_fmt_2)"""
tab_file = get_file("cmscan_115_IRES_5S_U2_Yeast_fmt_2.tbl")
qresults = parse(tab_file, FMT, fmt=2)
counter = itertools.count(start=1)
@ -204,7 +204,7 @@ class CmscanCases(unittest.TestCase):
def test_cmscan_mq_mm_fmt3(self):
"""Test parsing infernal-tab, cmscan, multiple queries, multiple match, one hsp, fmt 3 (IRES_5S_U2_Yeast_fmt_3)"""
"""Test parsing infernal-tab, cmscan, multiple queries, multiple hit, one hsp, fmt 3 (IRES_5S_U2_Yeast_fmt_3)"""
tab_file = get_file("cmscan_115_IRES_5S_U2_Yeast_fmt_3.tbl")
qresults = parse(tab_file, FMT, fmt=3)
counter = itertools.count(start=1)
@ -244,7 +244,7 @@ class CmsearchCases(unittest.TestCase):
"""Test parsing cmsearch output."""
def test_1q_0m(self):
"""Test parsing infernal-tab, cmsearch, single query, no hits (IRES_Yeast)"""
"""Test parsing infernal-tab, cmsearch, one query, no hits (IRES_Yeast)"""
tab_file = get_file("cmsearch_114_IRES_Yeast.tbl")
qresults = parse(tab_file, FMT)
@ -252,7 +252,7 @@ class CmsearchCases(unittest.TestCase):
def test_cmsearch_1q_1m(self):
"""Test parsing infernal-tab, cmsearch, one queries, one match, one hsp (U2_Yeast)"""
"""Test parsing infernal-tab, cmsearch, one queries, one hit, one hsp (U2_Yeast)"""
tab_file = get_file("cmsearch_114_U2_Yeast.tbl")
qresults = parse(tab_file, FMT)
counter = itertools.count(start=1)
@ -291,7 +291,7 @@ class CmsearchCases(unittest.TestCase):
def test_cmsearch_1q_mm(self):
"""Test parsing infernal-tab, cmsearch, one queries, multiple match, one hsp (5S_Yeast)"""
"""Test parsing infernal-tab, cmsearch, one queries, multiple hit, one hsp (5S_Yeast)"""
tab_file = get_file("cmsearch_114_5S_Yeast.tbl")
qresults = parse(tab_file, FMT)
counter = itertools.count(start=1)

16
Tests/test_SearchIO_infernal_tab_index.py
View File

@ -63,26 +63,26 @@ class InfernalTabIndexCases(CheckIndex):
fmt = "infernal-tab"
def test_infernal_tab_single(self):
"""Test infernal-tab indexing, cmsearch, single query."""
def test_infernal_tab_1q(self):
"""Test infernal-tab indexing, cmsearch, one query, one hit."""
filename = os.path.join("Infernal", "cmsearch_114_U2_Yeast.tbl")
self.check_index(filename, self.fmt)
def test_infernal_tab_single_no_hit(self):
"""Test infernal-tab indexing, cmsearch, single query."""
def test_infernal_tab_1q_0m(self):
"""Test infernal-tab indexing, cmsearch, single query, not hits."""
filename = os.path.join("Infernal", "cmsearch_114_IRES_Yeast.tbl")
self.check_index(filename, self.fmt)
def test_infernal_tab_single_multiple_hit(self):
"""Test infernal-tab indexing, cmsearch, single query."""
def test_infernal_tab_1q_mm(self):
"""Test infernal-tab indexing, cmsearch, single query, multiple hits."""
filename = os.path.join("Infernal", "cmsearch_114_5S_Yeast.tbl")
self.check_index(filename, self.fmt)
def test_infernal_tab_multiple_multiple_hit(self):
"""Test infernal-tab indexing, cmscan, multiple query."""
def test_infernal_tab_mq_mm(self):
"""Test infernal-tab indexing, cmscan, multiple query, multiple matches."""
filename = os.path.join("Infernal", "cmscan_115_IRES_5S_U2_Yeast.tbl")
self.check_index(filename, self.fmt)

2
Tests/test_SearchIO_infernal_text.py
View File

@ -119,7 +119,7 @@ class CmsearchCases(unittest.TestCase):
def test_cmsearch_1q_0m(self):
"""Test parsing infernal-text, cmsearch, single query, no hits (IRES_Yeast)"""
"""Test parsing infernal-text, cmsearch, one query, no hits (IRES_Yeast)"""
text_file = get_file("cmsearch_114_IRES_Yeast.txt")
qresults = parse(text_file, FMT)
counter = itertools.count(start=1)