frozenleaves/biopython
1
0
Fork 0
mirror of https://github.com/biopython/biopython.git synced 2025-10-20 21:53:47 +08:00
Code Issues Packages Projects Releases Wiki Activity

Document removal of deprecated 1to3 and 3to1 functions

Browse Source 
Deprecated in #3985 and removed in #4508.
This commit is contained in:
Peter Cock
2025-03-10 13:31:55 +00:00
parent 332c800b4d
commit aec876aa89
1 changed files with 7 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
DEPRECATED.rst
View File

@ -188,10 +188,16 @@ The `Bio.HMM.DynamicProgramming`, `Bio.HMM.Trainer`, `Bio.HMM.MarkovModel`, and
`Bio.HMM.Utilities` modules were deprecated in release 1.82. Consider using `Bio.HMM.Utilities` modules were deprecated in release 1.82. Consider using
hmmlearn (https://pypi.org/project/hmmlearn/) instead. hmmlearn (https://pypi.org/project/hmmlearn/) instead.
Bio.PDB.Polypeptide
-------------------
Functions ``three_to_one`` and ``one_to_three`` were deprecated in Release 1.80
and removed in Release 1.82. Please use the dictionary ``nucleic_letters_3to1``
instead, available from this module but defined in ``Bio.Data.PDBData``.
Bio.Data.SCOPData Bio.Data.SCOPData
----------------- -----------------
Deprecated in release 1.80, and removed in release 1.82. Please use Deprecated in release 1.80, and removed in release 1.82. Please use
Bio.Data.PDBData instead. ``Bio.Data.PDBData`` instead.
Bio.Application and the command line wrappers using it Bio.Application and the command line wrappers using it
------------------------------------------------------ ------------------------------------------------------