Move or remove import comments

Bio/ExPASy/ScanProsite.py

@@ -5,7 +5,6 @@
 
 """Code for calling and parsing ScanProsite from ExPASy."""
 
-# Importing these functions with leading underscore as not intended for reuse
 from urllib.parse import urlencode
 from urllib.request import urlopen
 from xml.sax import handler

Bio/GenBank/__init__.py

@@ -49,8 +49,6 @@ from Bio.SeqFeature import SeqFeature
 from Bio.SeqFeature import SimpleLocation
 
 from .Scanner import GenBankScanner
-
-# other Bio.GenBank stuff
 from .utils import FeatureValueCleaner
 
 # Constants used to parse GenBank header lines

Bio/Graphics/BasicChromosome.py

@@ -33,7 +33,6 @@ This provides nice output in PDF, SVG and postscript.  If you have
 reportlab's renderPM module installed you can also use PNG etc.
 """
 
-# reportlab
 from reportlab.graphics.shapes import ArcPath
 from reportlab.graphics.shapes import Drawing
 from reportlab.graphics.shapes import Line

Bio/Graphics/ColorSpiral.py

@@ -19,7 +19,6 @@ a dictionary of colours (if passed an iterable containing the names of
 categories to be coloured).
 """
 
-# standard library
 import colorsys  # colour format conversions
 import random  # for jitter values
 from math import exp

Bio/Graphics/Comparative.py

@@ -11,7 +11,6 @@ compare different types of information. The most basic example is comparing
 two variables in a traditional scatter plot.
 """
 
-# reportlab
 from reportlab.graphics.charts.lineplots import LinePlot
 from reportlab.graphics.charts.markers import makeEmptyCircle
 from reportlab.graphics.charts.markers import makeEmptySquare

Bio/Graphics/DisplayRepresentation.py

@@ -10,10 +10,8 @@ Classes in this module are designed to hold information in a way that
 makes it easy to draw graphical figures.
 """
 
-# reportlab
 from reportlab.lib import colors
 
-# local stuff
 from Bio.Graphics.BasicChromosome import ChromosomeSegment
 from Bio.Graphics.BasicChromosome import TelomereSegment
 

Bio/Graphics/Distribution.py

@@ -14,7 +14,6 @@ or anything similar.
 Reportlab is used for producing the graphical output.
 """
 
-# standard library
 import math
 
 from reportlab.graphics.charts.barcharts import BarChartProperties
@@ -23,8 +22,6 @@ from reportlab.graphics.shapes import Drawing
 from reportlab.graphics.shapes import String
 from reportlab.graphics.widgetbase import TypedPropertyCollection
 from reportlab.lib import colors
-
-# reportlab
 from reportlab.lib.pagesizes import letter
 from reportlab.lib.units import inch
 

Bio/Graphics/GenomeDiagram/_AbstractDrawer.py

@@ -32,8 +32,6 @@ For dealing with biological information, the package expects Biopython objects
 like SeqFeatures.
 """
 
-# ReportLab imports
-
 from itertools import islice
 from math import cos
 from math import pi

Bio/Graphics/GenomeDiagram/_CircularDrawer.py

@@ -13,8 +13,6 @@
 
 """CircularDrawer module for GenomeDiagram."""
 
-# ReportLab imports
-
 from math import cos
 from math import pi
 from math import sin
@@ -29,8 +27,6 @@ from reportlab.graphics.shapes import String
 from reportlab.lib import colors
 
 from ._AbstractDrawer import _stroke_and_fill_colors
-
-# GenomeDiagram imports
 from ._AbstractDrawer import AbstractDrawer
 from ._AbstractDrawer import draw_polygon
 from ._AbstractDrawer import intermediate_points

Bio/Graphics/GenomeDiagram/_FeatureSet.py

@@ -24,8 +24,6 @@ For drawing capabilities, this module uses reportlab to draw and write
 the diagram: http://www.reportlab.com
 """
 
-# GenomeDiagram
-# Builtins
 import re
 
 from ._Feature import Feature

Bio/Graphics/GenomeDiagram/_Graph.py

@@ -21,8 +21,6 @@ For drawing capabilities, this module uses reportlab to draw and write
 the diagram: http://www.reportlab.com
 """
 
-# ReportLab imports
-
 from math import sqrt
 
 from reportlab.lib import colors

Bio/Graphics/GenomeDiagram/_LinearDrawer.py

@@ -20,8 +20,6 @@ For drawing capabilities, this module uses reportlab to draw and write
 the diagram: http://www.reportlab.com
 """
 
-# ReportLab imports
-
 from math import ceil
 
 from reportlab.graphics.shapes import Drawing
@@ -32,8 +30,6 @@ from reportlab.graphics.shapes import String
 from reportlab.lib import colors
 
 from ._AbstractDrawer import _stroke_and_fill_colors
-
-# GenomeDiagram imports
 from ._AbstractDrawer import AbstractDrawer
 from ._AbstractDrawer import angle2trig
 from ._AbstractDrawer import deduplicate

Bio/HMM/MarkovModel.py

@@ -7,7 +7,6 @@
 
 """Deal with representations of Markov Models."""
 
-# standard modules
 import copy
 import math
 import random

Bio/HMM/Trainer.py

@@ -20,13 +20,11 @@ This aims to estimate two parameters:
 
 """
 
-# standard modules
 import math
 import warnings
 
 from Bio import BiopythonDeprecationWarning
 
-# local stuff
 from .DynamicProgramming import ScaledDPAlgorithms
 
 warnings.warn(

Bio/PDB/PDBIO.py

@@ -8,14 +8,9 @@
 import os
 import warnings
 
-# Exceptions and Warnings
 from Bio import BiopythonWarning
-
-# Allowed Elements
 from Bio.Data.IUPACData import atom_weights
 from Bio.PDB.PDBExceptions import PDBIOException
-
-# To allow saving of chains, residues, etc..
 from Bio.PDB.StructureBuilder import StructureBuilder
 
 _ATOM_FORMAT_STRING = (

Bio/PDB/ic_rebuild.py

@@ -10,8 +10,6 @@ import re
 from io import StringIO
 from itertools import zip_longest
 from typing import Any
-
-# for typing
 from typing import Dict
 from typing import Tuple
 from typing import Union

Bio/PDB/internal_coords.py

@@ -271,13 +271,9 @@ import copy
 import re
 from collections import deque
 from collections import namedtuple
-
-# from numpy import floor, ndarray
 from numbers import Integral
 from typing import cast
 from typing import Dict
-
-# for type checking only
 from typing import List
 from typing import Optional
 from typing import Set