frozenleaves/biopython
1
0
Fork 0
mirror of https://github.com/biopython/biopython.git synced 2025-10-20 13:43:47 +08:00
Code Issues Packages Projects Releases Wiki Activity

Removed PDB parsing

Browse Source
This commit is contained in:
nisse
2004-05-05 14:43:34 +00:00
parent 6673f0fee3
commit 836d8e5c54
1 changed files with 7 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
Bio/PDB/DSSP.py
View File

@ -68,14 +68,12 @@ class DSSP:
Note that DSSP can only handle one model.
"""
def __init__(self, pdb_file, dssp="dssp"):
def __init__(self, model, pdb_file, dssp="dssp"):
"""
pdb_file --- a PDB file
dssp --- the dssp executable (argument to os.system)
"""
p=PDBParser()
s=p.get_structure("X", pdb_file)
model=s[0]
# create DSSP dictionary
self.dssp_dict=dssp_dict_from_pdb_file(pdb_file, dssp)
map={}
@ -136,7 +134,12 @@ if __name__=="__main__":
import sys
d=DSSP(sys.argv[1])
p=PDBParser()
s=p.get_structure('X', sys.argv[1])
model=s[0]
d=DSSP(model, sys.argv[1])
for r in d.get_iterator():
print r