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use assertEqual

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This commit is contained in:
Michiel de Hoon
2020-11-18 09:31:31 +09:00
committed by Peter Cock
parent 36891fbce2
commit 59b5aabe98
5 changed files with 19 additions and 19 deletions
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4
Tests/test_PDB_MMCIF2Dict.py
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@ -311,12 +311,12 @@ class MMCIF2dictTests(unittest.TestCase):
mmcif_dict2 = MMCIF2Dict(
io.StringIO(textwrap.dedent(test_data.replace("loop_", "LOOP_")))
)
self.assertDictEqual(mmcif_dict, mmcif_dict2)
self.assertEqual(mmcif_dict, mmcif_dict2)
mmcif_dict2 = MMCIF2Dict(
io.StringIO(textwrap.dedent(test_data.replace("loop_", "looP_")))
)
self.assertDictEqual(mmcif_dict, mmcif_dict2)
self.assertEqual(mmcif_dict, mmcif_dict2)
mmcif_dict2 = MMCIF2Dict(
io.StringIO(textwrap.dedent(test_data.replace("_loop", "_LOOP")))

20
Tests/test_PDB_MMCIFParser.py
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@ -125,10 +125,10 @@ class ParseReal(unittest.TestCase):
for atoms in [s_atoms, f_atoms]:
self.assertEqual(len(atoms), 644)
atom_names = ["N", "CA", "C", "O", "CB"]
self.assertSequenceEqual([a.get_name() for a in atoms[:5]], atom_names)
self.assertSequenceEqual([a.get_id() for a in atoms[:5]], atom_names)
self.assertSequenceEqual([a.get_fullname() for a in atoms[:5]], atom_names)
self.assertSequenceEqual(
self.assertEqual([a.get_name() for a in atoms[:5]], atom_names)
self.assertEqual([a.get_id() for a in atoms[:5]], atom_names)
self.assertEqual([a.get_fullname() for a in atoms[:5]], atom_names)
self.assertEqual(
[a.get_occupancy() for a in atoms[:5]], [1.0, 1.0, 1.0, 1.0, 1.0]
)
self.assertIsInstance(atoms[0].get_coord(), numpy.ndarray)
@ -156,10 +156,10 @@ class ParseReal(unittest.TestCase):
for atoms in [s_atoms, f_atoms]:
atom_names = ["N", "CA", "C", "O", "CB"]
self.assertSequenceEqual([a.get_name() for a in atoms[:5]], atom_names)
self.assertSequenceEqual([a.get_id() for a in atoms[:5]], atom_names)
self.assertSequenceEqual([a.get_fullname() for a in atoms[:5]], atom_names)
self.assertSequenceEqual(
self.assertEqual([a.get_name() for a in atoms[:5]], atom_names)
self.assertEqual([a.get_id() for a in atoms[:5]], atom_names)
self.assertEqual([a.get_fullname() for a in atoms[:5]], atom_names)
self.assertEqual(
[a.get_occupancy() for a in atoms[:5]], [1.0, 1.0, 1.0, 1.0, 1.0]
)
self.assertIsInstance(atoms[0].get_coord(), numpy.ndarray)
@ -358,11 +358,11 @@ class CIFtoPDB(unittest.TestCase):
pdb_atom_names = [a.name for a in pdb_struct.get_atoms()]
cif_atom_names = [a.name for a in cif_struct.get_atoms()]
self.assertEqual(len(pdb_atom_names), len(cif_atom_names))
self.assertSequenceEqual(pdb_atom_names, cif_atom_names)
self.assertEqual(pdb_atom_names, cif_atom_names)
pdb_atom_elems = [a.element for a in pdb_struct.get_atoms()]
cif_atom_elems = [a.element for a in cif_struct.get_atoms()]
self.assertSequenceEqual(pdb_atom_elems, cif_atom_elems)
self.assertEqual(pdb_atom_elems, cif_atom_elems)
def test_conversion_not_preserve_numbering(self):
"""Convert mmCIF to PDB and renumber atom serials."""

2
Tests/test_PDB_ResidueDepth.py
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@ -111,7 +111,7 @@ class ResidueDepth_tests(unittest.TestCase):
biopy_radii = []
for atom in model.get_atoms():
biopy_radii.append(_get_atom_radius(atom, rtype="united"))
self.assertListEqual(msms_radii, biopy_radii)
self.assertEqual(msms_radii, biopy_radii)
if __name__ == "__main__":

8
Tests/test_Pathway.py
View File

@ -81,8 +81,8 @@ class GraphTestCase(unittest.TestCase):
repr(a),
"<Graph: ('a': ('b', 'label1'))('b': ('a', 'label2'),('c', 'label1'))('c': )>",
)
self.assertListEqual(a.edges("label1"), [("a", "b"), ("b", "c")])
self.assertListEqual(a.labels(), ["label1", "label2"])
self.assertEqual(a.edges("label1"), [("a", "b"), ("b", "c")])
self.assertEqual(a.labels(), ["label1", "label2"])
class MultiGraphTestCase(unittest.TestCase):
@ -167,8 +167,8 @@ class MultiGraphTestCase(unittest.TestCase):
self.assertEqual(
str(a), "<MultiGraph: 3 node(s), 3 edge(s), 2 unique label(s)>"
)
self.assertListEqual(a.edges("label1"), [("a", "b"), ("b", "c")])
self.assertListEqual(a.labels(), ["label1", "label2"])
self.assertEqual(a.edges("label1"), [("a", "b"), ("b", "c")])
self.assertEqual(a.labels(), ["label1", "label2"])
class ReactionTestCase(unittest.TestCase):

4
Tests/test_SearchIO_hmmer3_text.py
View File

@ -1689,10 +1689,10 @@ class HmmersearchCases(unittest.TestCase):
self.assertEqual(len(qresults), 2)
# Test whether proper query id is read
self.assertListEqual([x.id for x in qresults], ["infile_sto", "infile_sto2"])
self.assertEqual([x.id for x in qresults], ["infile_sto", "infile_sto2"])
# Test if proper number of hits is read
self.assertListEqual([len(x.hits) for x in qresults], [10, 10])
self.assertEqual([len(x.hits) for x in qresults], [10, 10])
def test_31b2_hmmscan_001(self):
"""Test parsing hmmscan 3.1b2 (text_31b2_hmmscan_001)."""