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https://github.com/biopython/biopython.git
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str
This commit is contained in:
committed by
Peter Cock
parent
4dd0e70a5b
commit
50d0c7d33f
@ -116,10 +116,10 @@ class PhdTestOne(unittest.TestCase):
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self.assertEqual(record.sites[-3], ("g", "11", "10840"))
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self.assertEqual(record.sites[-2], ("t", "11", "10855"))
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self.assertEqual(record.sites[-1], ("g", "11", "10864"))
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self.assertEqual(str(record.seq)[:10], "ctccgtcgga")
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self.assertEqual(str(record.seq)[-10:], "ccaaagcgtg")
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self.assertEqual(str(record.seq_trimmed)[:10], "cgtcggaaca")
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self.assertEqual(str(record.seq_trimmed)[-10:], "tatttcggag")
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self.assertEqual(record.seq[:10], "ctccgtcgga")
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self.assertEqual(record.seq[-10:], "ccaaagcgtg")
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self.assertEqual(record.seq_trimmed[:10], "cgtcggaaca")
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self.assertEqual(record.seq_trimmed[-10:], "tatttcggag")
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# Record 2
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record = next(records)
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center = len(record.sites) // 2
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@ -168,10 +168,10 @@ class PhdTestOne(unittest.TestCase):
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self.assertEqual(record.sites[-3], ("a", "8", "10574"))
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self.assertEqual(record.sites[-2], ("a", "7", "10584"))
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self.assertEqual(record.sites[-1], ("g", "7", "10599"))
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self.assertEqual(str(record.seq)[:10], "cgggatccca")
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self.assertEqual(str(record.seq)[-10:], "cccagccaag")
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self.assertEqual(str(record.seq_trimmed)[:10], "cctgatccga")
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self.assertEqual(str(record.seq_trimmed)[-10:], "ggggccgcca")
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self.assertEqual(record.seq[:10], "cgggatccca")
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self.assertEqual(record.seq[-10:], "cccagccaag")
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self.assertEqual(record.seq_trimmed[:10], "cctgatccga")
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self.assertEqual(record.seq_trimmed[-10:], "ggggccgcca")
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# Record 3
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record = next(records)
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center = len(record.sites) // 2
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@ -220,8 +220,8 @@ class PhdTestOne(unittest.TestCase):
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self.assertEqual(record.sites[-3], ("t", "8", "9495"))
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self.assertEqual(record.sites[-2], ("t", "3", "9504"))
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self.assertEqual(record.sites[-1], ("n", "0", "9511"))
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self.assertEqual(str(record.seq)[:10], "acataaatca")
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self.assertEqual(str(record.seq)[-10:], "atctgctttn")
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self.assertEqual(record.seq[:10], "acataaatca")
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self.assertEqual(record.seq[-10:], "atctgctttn")
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# Make sure that no further records are found
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self.assertRaises(StopIteration, next, records)
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@ -277,7 +277,7 @@ class PhdTest454(unittest.TestCase):
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self.assertEqual(record.id, "EBE03TV04IHLTF.77-243")
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self.assertEqual(record.name, "EBE03TV04IHLTF.77-243")
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self.assertEqual(record.description, "EBE03TV04IHLTF.77-243 1")
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self.assertEqual(str(record.seq), "ggggatgaaagggatctcggtggtaggtga")
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self.assertEqual(record.seq, "ggggatgaaagggatctcggtggtaggtga")
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self.assertEqual(
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record.letter_annotations["phred_quality"][:10],
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[37, 37, 37, 37, 37, 37, 37, 37, 37, 37],
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@ -323,7 +323,7 @@ class PhdTestSolexa(unittest.TestCase):
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self.assertEqual(record.id, "HWI-EAS94_4_1_1_537_446")
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self.assertEqual(record.name, "HWI-EAS94_4_1_1_537_446")
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self.assertEqual(record.description, "HWI-EAS94_4_1_1_537_446 1")
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self.assertEqual(str(record.seq), "gccaatcaggtttctctgcaagcccctttagcagctgagc")
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self.assertEqual(record.seq, "gccaatcaggtttctctgcaagcccctttagcagctgagc")
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self.assertEqual(
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record.letter_annotations["phred_quality"],
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[
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@ -400,7 +400,7 @@ class PhdTestSolexa(unittest.TestCase):
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self.assertEqual(record.id, "HWI-EAS94_4_1_1_602_99")
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self.assertEqual(record.name, "HWI-EAS94_4_1_1_602_99")
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self.assertEqual(record.description, "HWI-EAS94_4_1_1_602_99 1")
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self.assertEqual(str(record.seq), "gccatggcacatatatgaaggtcagaggacaacttgctgt")
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self.assertEqual(record.seq, "gccatggcacatatatgaaggtcagaggacaacttgctgt")
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self.assertEqual(
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record.letter_annotations["phred_quality"],
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[
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