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Support files for test_GFF
This commit is contained in:
grouse
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Tests/GFF/NC_001422.gbk
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Tests/GFF/NC_001422.gbk
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LOCUS NC_001422 5386 bp ss-DNA circular PHG 09-JUL-2002
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DEFINITION Coliphage phiX174, complete genome.
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ACCESSION NC_001422
|
||||||
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VERSION NC_001422.1 GI:9626372
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KEYWORDS .
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|
SOURCE coliphage phiX174.
|
||||||
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ORGANISM coliphage phiX174
|
||||||
|
Viruses; ssDNA viruses; Microviridae; Microvirus.
|
||||||
|
REFERENCE 1 (bases 1047 to 1094)
|
||||||
|
AUTHORS Ziff,E.B., Sedat,J.W. and Galibert,F.
|
||||||
|
TITLE Determination of the nucleotide sequence of a fragment of
|
||||||
|
bacteriophage phiX 174 DNA
|
||||||
|
JOURNAL Nature New Biol. 241 (106), 34-37 (1973)
|
||||||
|
MEDLINE 73161741
|
||||||
|
PUBMED 4349156
|
||||||
|
REFERENCE 2 (bases 2370 to 2421)
|
||||||
|
AUTHORS Robertson,H.D., Barrell,B.G., Weith,H.L. and Donelson,J.E.
|
||||||
|
TITLE Isolation and sequence analysis of a ribosome-protected fragment
|
||||||
|
from bacteriophage phiX 174 DNA
|
||||||
|
JOURNAL Nature New Biol. 241 (106), 38-40 (1973)
|
||||||
|
MEDLINE 73161742
|
||||||
|
PUBMED 4572838
|
||||||
|
REFERENCE 3 (bases 2370 to 2420)
|
||||||
|
AUTHORS Barrell,B.G., Weith,H.L., Donelson,J.E. and Robertson,H.D.
|
||||||
|
TITLE Sequence analysis of the ribosome-protected bacteriophase phiX174
|
||||||
|
DNA fragment containing the gene G initiation site
|
||||||
|
JOURNAL J. Mol. Biol. 92 (3), 377-393 (1975)
|
||||||
|
MEDLINE 75192039
|
||||||
|
PUBMED 1095758
|
||||||
|
REFERENCE 4 (bases 2365 to 2591)
|
||||||
|
AUTHORS Air,G.M., Blackburn,E.H., Sanger,F. and Coulson,A.R.
|
||||||
|
TITLE The nucleotide and amino acid sequences of the N (5') terminal
|
||||||
|
region of gene G of bacteriophage phiphiX 174
|
||||||
|
JOURNAL J. Mol. Biol. 96 (4), 703-719 (1975)
|
||||||
|
MEDLINE 76072037
|
||||||
|
PUBMED 1081600
|
||||||
|
REFERENCE 5 (bases 2263 to 2421)
|
||||||
|
AUTHORS Fiddes,J.C.
|
||||||
|
TITLE Nucleotide sequence of the intercistronic region between genes G
|
||||||
|
and F in bacteriophage phiX174 DNA
|
||||||
|
JOURNAL J. Mol. Biol. 107 (1), 1-24 (1976)
|
||||||
|
MEDLINE 77074135
|
||||||
|
PUBMED 826639
|
||||||
|
REFERENCE 6 (bases 4137 to 4207)
|
||||||
|
AUTHORS Mansfeld,A.D., Vereijken,J.M. and Jansz,H.S.
|
||||||
|
TITLE The nucleotide sequence of a DNA fragment, 71 base pairs in length,
|
||||||
|
near the origin of DNA replication of bacteriophage 0X174
|
||||||
|
JOURNAL Nucleic Acids Res. 3 (10), 2827-2844 (1976)
|
||||||
|
MEDLINE 77057432
|
||||||
|
PUBMED 995652
|
||||||
|
REFERENCE 7 (bases 730 to 903)
|
||||||
|
AUTHORS Blackburn,E.H.
|
||||||
|
TITLE Transcription and sequence analysis of a fragment of bacteriophage
|
||||||
|
phiX174 DNA
|
||||||
|
JOURNAL J. Mol. Biol. 107 (4), 417-431 (1976)
|
||||||
|
MEDLINE 77074161
|
||||||
|
PUBMED 826641
|
||||||
|
REFERENCE 8 (bases 1017 to 1081)
|
||||||
|
AUTHORS Sedat,J., Ziff,E. and Galibert,F.
|
||||||
|
TITLE Direct determination of DNA nucleotide sequences. Structure of
|
||||||
|
large specific fragments of bacteriophage phiX174 DNA
|
||||||
|
JOURNAL J. Mol. Biol. 107 (4), 391-416 (1976)
|
||||||
|
MEDLINE 77074160
|
||||||
|
PUBMED 1003475
|
||||||
|
REFERENCE 9 (bases 1017 to 1762)
|
||||||
|
AUTHORS Air,G.M., Blackburn,E.H., Coulson,A.R., Galibert,F., Sanger,F.,
|
||||||
|
Sedat,J.W. and Ziff,E.B.
|
||||||
|
TITLE Gene F of bacteriophage phiX174. Correlation of nucleotide
|
||||||
|
sequences from the DNA and amino acid sequences from the gene
|
||||||
|
product
|
||||||
|
JOURNAL J. Mol. Biol. 107 (4), 445-458 (1976)
|
||||||
|
MEDLINE 77074163
|
||||||
|
PUBMED 1088826
|
||||||
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REFERENCE 10 (bases 2395 to 2922)
|
||||||
|
AUTHORS Air,G.M., Sanger,F. and Coulson,A.R.
|
||||||
|
TITLE Nucleotide and amino acid sequences of gene G of omegaX174
|
||||||
|
JOURNAL J. Mol. Biol. 108 (3), 519-533 (1976)
|
||||||
|
MEDLINE 77121207
|
||||||
|
PUBMED 1088827
|
||||||
|
REFERENCE 11 (bases 5022 to 5132)
|
||||||
|
AUTHORS Brown,N.L. and Smith,M.
|
||||||
|
TITLE DNA sequence of a region of the phi X174 genome coding for a
|
||||||
|
ribosome binding site
|
||||||
|
JOURNAL Nature 265 (5596), 695-698 (1977)
|
||||||
|
MEDLINE 77171176
|
||||||
|
PUBMED 859573
|
||||||
|
REFERENCE 12 (bases 5346 to 5386; 1 to 159)
|
||||||
|
AUTHORS Smith,M., Brown,N.L., Air,G.M., Barrell,B.G., Coulson,A.R.,
|
||||||
|
Hutchison,C.A. III and Sanger,F.
|
||||||
|
TITLE DNA sequence at the C termini of the overlapping genes A and B in
|
||||||
|
bacteriophage phi X174
|
||||||
|
JOURNAL Nature 265 (5596), 702-705 (1977)
|
||||||
|
MEDLINE 77171178
|
||||||
|
PUBMED 859575
|
||||||
|
REFERENCE 13 (bases 1 to 5375)
|
||||||
|
AUTHORS Sanger,F., Air,G.M., Barrell,B.G., Brown,N.L., Coulson,A.R.,
|
||||||
|
Fiddes,C.A., Hutchison,C.A., Slocombe,P.M. and Smith,M.
|
||||||
|
TITLE Nucliotide sequence of bacteriophage phi X174 DNA
|
||||||
|
JOURNAL Nature 265 (5596), 687-695 (1977)
|
||||||
|
MEDLINE 77171175
|
||||||
|
PUBMED 870828
|
||||||
|
REFERENCE 14 (bases 4505 to 5374)
|
||||||
|
AUTHORS Brown,N.L. and Smith,M.
|
||||||
|
TITLE The sequence of a region of bacteriophage phiX174 DNA coding for
|
||||||
|
parts of genes A and B
|
||||||
|
JOURNAL J. Mol. Biol. 116 (1), 1-28 (1977)
|
||||||
|
MEDLINE 78069208
|
||||||
|
PUBMED 592379
|
||||||
|
REFERENCE 15 (sites)
|
||||||
|
AUTHORS Fiddes,J.C.
|
||||||
|
TITLE The nucleotide sequence of a viral DNA
|
||||||
|
JOURNAL Sci. Am. 237 (6), 54-67 (1977)
|
||||||
|
MEDLINE 78054683
|
||||||
|
PUBMED 929160
|
||||||
|
REFERENCE 16 (bases 1 to 5386)
|
||||||
|
AUTHORS Sanger,F., Coulson,A.R., Friedmann,T., Air,G.M., Barrell,B.G.,
|
||||||
|
Brown,N.L., Fiddes,J.C., Hutchison,C.A. III, Slocombe,P.M. and
|
||||||
|
Smith,M.
|
||||||
|
TITLE The nucleotide sequence of bacteriophage phiX174
|
||||||
|
JOURNAL J. Mol. Biol. 125 (2), 225-246 (1978)
|
||||||
|
MEDLINE 79091185
|
||||||
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PUBMED 731693
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|
REFERENCE 17 (bases 1290 to 1302; 1340 to 1430; 1510 to 1570; 1600 to 1750)
|
||||||
|
AUTHORS Air,G.M., Coulson,A.R., Fiddes,J.C., Friedmann,T., Hutchison,C.A.
|
||||||
|
III, Sanger,F., Slocombe,P.M. and Smith,A.J.
|
||||||
|
TITLE Nucleotide sequence of the F protein coding region of bacteriophage
|
||||||
|
phiX174 and the amino acid sequence of its product
|
||||||
|
JOURNAL J. Mol. Biol. 125 (2), 247-254 (1978)
|
||||||
|
MEDLINE 79091186
|
||||||
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PUBMED 731694
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|
REFERENCE 18 (bases 4256 to 4317)
|
||||||
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AUTHORS Langeveld,S.A., van Mansfeld,A.D., de Winter,J.M. and Weisbeek,P.J.
|
||||||
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TITLE Cleavage of single-stranded DNA by the A and A* proteins of
|
||||||
|
bacteriophage phi X174
|
||||||
|
JOURNAL Nucleic Acids Res. 7 (8), 2177-2188 (1979)
|
||||||
|
MEDLINE 80101074
|
||||||
|
PUBMED 160544
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||||||
|
REFERENCE 19 (bases 4248 to 4332)
|
||||||
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AUTHORS Heidekamp,F., Langeveld,S.A., Baas,P.D. and Jansz,H.S.
|
||||||
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TITLE Studies of the recognition sequence of phi X174 gene A protein.
|
||||||
|
Cleavage site of phi X gene A protein in St-1 RFI DNA
|
||||||
|
JOURNAL Nucleic Acids Res. 8 (9), 2009-2021 (1980)
|
||||||
|
MEDLINE 81053861
|
||||||
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PUBMED 6253953
|
||||||
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REFERENCE 20 (bases 436 to 490; 630 to 669; 930 to 979)
|
||||||
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AUTHORS Takeshita,M., Kappen,L.S., Grollman,A.P., Eisenberg,M. and
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||||||
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Goldberg,I.H.
|
||||||
|
TITLE Strand scission of deoxyribonucleic acid by neocarzinostatin,
|
||||||
|
auromomycin, and bleomycin: studies on base release and nucleotide
|
||||||
|
sequence specificity
|
||||||
|
JOURNAL Biochemistry (N.Y.) 20 (26), 7599-7606 (1981)
|
||||||
|
MEDLINE 82113627
|
||||||
|
PUBMED 6173064
|
||||||
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REFERENCE 21 (bases 449 to 482; 504 to 598; 1047 to 1111)
|
||||||
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AUTHORS Ueda,K., Morita,J. and Komano,T.
|
||||||
|
TITLE Sequence specificity of heat-labile sites in DNA induced by
|
||||||
|
mitomycin C
|
||||||
|
JOURNAL Biochemistry (N.Y.) 23 (8), 1634-1640 (1984)
|
||||||
|
MEDLINE 84203526
|
||||||
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PUBMED 6232949
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||||||
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REFERENCE 22 (bases 1064 to 1757)
|
||||||
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AUTHORS Merville,M.P., Piette,J., Lopez,M., Decuyper,J. and van de Vorst,A.
|
||||||
|
TITLE Termination sites of the in vitro DNA synthesis on single-stranded
|
||||||
|
DNA photosensitized by promazines
|
||||||
|
JOURNAL J. Biol. Chem. 259 (24), 15069-15077 (1984)
|
||||||
|
MEDLINE 85079985
|
||||||
|
PUBMED 6239864
|
||||||
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REFERENCE 23 (bases 2380 to 2512; 2593 to 2786; 2788 to 2947)
|
||||||
|
AUTHORS Air,G.M., Els,M.C., Brown,L.E., Laver,W.G. and Webster,R.G.
|
||||||
|
TITLE Location of antigenic sites on the three-dimensional structure of
|
||||||
|
the influenza N2 virus neuraminidase
|
||||||
|
JOURNAL Virology 145 (2), 237-248 (1985)
|
||||||
|
MEDLINE 85274373
|
||||||
|
PUBMED 2411049
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||||||
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COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
|
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|
reference sequence was derived from J02482.
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||||||
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[8] intermittent sequences.
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||||||
|
[15] review; discussion of complete genome.
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||||||
|
Double checked with sumex tape.
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||||||
|
Single-stranded circular DNA which codes for eleven proteins.
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|
Replicative form is duplex, icosahedron, related to s13 & g4. [21]
|
||||||
|
indicates that mitomycin C reduced with sodium borohydride induced
|
||||||
|
heat-labile sites in DNA most preferentially at dinucleotide
|
||||||
|
sequence 'gt' (especially 'Pu-g-t').
|
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|
Bacteriophage phi-X174 single stranded DNA molecules were
|
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|
irradiated with near UV light in the presence of promazine
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|
derivatives, after priming with restriction fragments or synthetic
|
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|
primers [22]. The resulting DNA fragments were used as templates
|
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|
for in vitro complementary chain synthesis by E.coli DNA polymerase
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I [22]. More than 90% of the observed chain terminations were
|
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|
mapped one nucleotide before a guanine residue [22]. Photoreaction
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||||||
|
occurred more predominantly with guanine residues localized in
|
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|
single-stranded parts of the genome [22]. These same guanine
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residues could also be damaged when the reaction was performed in
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the dark, in the presence of promazine cation radicals [22].
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FEATURES Location/Qualifiers
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source 1..5386
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/organism="coliphage phiX174"
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/specific_host="Escherichia coli"
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/db_xref="taxon:10847"
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CDS join(3981..5386,1..136)
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/codon_start=1
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/transl_table=11
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/product="rf replication, viral strand synthesis protein"
|
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/protein_id="NP_040703.1"
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/db_xref="GI:9626373"
|
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/translation="MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFH
|
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KQMDNRIKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQCY
|
||||||
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NVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNYPKKKGI
|
||||||
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KDECSRLLEASTMKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPN
|
||||||
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ALRDYFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPTG
|
||||||
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SVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKA
|
||||||
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TSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGM
|
||||||
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KMLTMTNLSTECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT
|
||||||
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NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKW
|
||||||
|
TAGGK"
|
||||||
|
CDS join(4497..5386,1..136)
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="shut off host DNA synthesis protein"
|
||||||
|
/protein_id="NP_040704.1"
|
||||||
|
/db_xref="GI:9626374"
|
||||||
|
/translation="MKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDN
|
||||||
|
PNALRDYFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLP
|
||||||
|
TGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPL
|
||||||
|
KATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNF
|
||||||
|
GMKMLTMTNLSTECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPV
|
||||||
|
TTNLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKS
|
||||||
|
KWTAGGK"
|
||||||
|
CDS join(5075..5386,1..51)
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="capsid morphogenesis protein"
|
||||||
|
/protein_id="NP_040705.1"
|
||||||
|
/db_xref="GI:9626375"
|
||||||
|
/translation="MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTY
|
||||||
|
QAGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQ
|
||||||
|
PAEFYRFHDAEVNTFGYF"
|
||||||
|
variation 23
|
||||||
|
/note="c in wt; t in am18 and am35 [14]"
|
||||||
|
variation 25
|
||||||
|
/note="g in wt; c in ts116 [14]"
|
||||||
|
CDS 51..221
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="gene K protein"
|
||||||
|
/protein_id="NP_040706.1"
|
||||||
|
/db_xref="GI:9626376"
|
||||||
|
/translation="MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLC
|
||||||
|
DLSPSTNDSVKN"
|
||||||
|
variation 57
|
||||||
|
/note="c in wt; t in am6 [14]"
|
||||||
|
variation 117
|
||||||
|
/note="g in wt; a in am6 [14]"
|
||||||
|
CDS 133..393
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="DNA maturation protein"
|
||||||
|
/protein_id="NP_040707.1"
|
||||||
|
/db_xref="GI:9626377"
|
||||||
|
/translation="MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTF
|
||||||
|
VKDWFRYESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS"
|
||||||
|
mRNA 358..3975
|
||||||
|
/note="mRNA (major alt.)"
|
||||||
|
mRNA 358..991
|
||||||
|
/note="mRNA (minor alt.)"
|
||||||
|
CDS 390..848
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="capsid morphogenesis protein"
|
||||||
|
/protein_id="NP_040708.1"
|
||||||
|
/db_xref="GI:9626378"
|
||||||
|
/translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
|
||||||
|
ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
|
||||||
|
FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
|
||||||
|
CDS 568..843
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="cell lysis protein"
|
||||||
|
/protein_id="NP_040709.1"
|
||||||
|
/db_xref="GI:9626379"
|
||||||
|
/translation="MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALNL
|
||||||
|
RKTLLMASSVRLKPLNCSRLPCVYAQETLTFLLTQKKTCVKNYVRKE"
|
||||||
|
CDS 848..964
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="core protein, DNA condensation protein"
|
||||||
|
/protein_id="NP_040710.1"
|
||||||
|
/db_xref="GI:9626380"
|
||||||
|
/translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
|
||||||
|
CDS 1001..2284
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="major coat protein"
|
||||||
|
/protein_id="NP_040711.1"
|
||||||
|
/db_xref="GI:9626381"
|
||||||
|
/translation="MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEM
|
||||||
|
DAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTG
|
||||||
|
YIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYG
|
||||||
|
FRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHD
|
||||||
|
VISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRF
|
||||||
|
FVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDV
|
||||||
|
FRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYD
|
||||||
|
QCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS"
|
||||||
|
CDS 2395..2922
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="major spike protein"
|
||||||
|
/protein_id="NP_040712.1"
|
||||||
|
/db_xref="GI:9626382"
|
||||||
|
/translation="MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYF
|
||||||
|
DSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTT
|
||||||
|
LPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVS
|
||||||
|
LNQVIKEIICLQPLK"
|
||||||
|
CDS 2931..3917
|
||||||
|
/codon_start=1
|
||||||
|
/transl_table=11
|
||||||
|
/product="minor spike protein, adsorption"
|
||||||
|
/protein_id="NP_040713.1"
|
||||||
|
/db_xref="GI:9626383"
|
||||||
|
/translation="MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNT
|
||||||
|
VGMGDAGIKSAIQGSNVPNPDEAAPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLLDL
|
||||||
|
VGLGGKSAADKGKDTRDYLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLD
|
||||||
|
NQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTN
|
||||||
|
LSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHI
|
||||||
|
GATAKDISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK"
|
||||||
|
misc_feature 3962
|
||||||
|
/note="transcription start site"
|
||||||
|
rep_origin 4306
|
||||||
|
/note="origin of viral strand synthesis"
|
||||||
|
misc_feature 4899
|
||||||
|
/note="transcription start site"
|
||||||
|
BASE COUNT 1291 a 1157 c 1254 g 1684 t
|
||||||
|
ORIGIN
|
||||||
|
1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa
|
||||||
|
61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac
|
||||||
|
121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
|
||||||
|
181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
|
||||||
|
241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
|
||||||
|
301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc tgagtccgat
|
||||||
|
361 gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa tccgtacgtt
|
||||||
|
421 tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg gatttaaccg
|
||||||
|
481 aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac cgctctcgtg
|
||||||
|
541 ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga taccctcgct
|
||||||
|
601 ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat cccgtcaaca
|
||||||
|
661 ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt attaatggcg
|
||||||
|
721 tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta cgcgcaggaa
|
||||||
|
781 acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt gcggaaggag
|
||||||
|
841 tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc cgcagccgtt
|
||||||
|
901 gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg gtcaacaatt
|
||||||
|
961 ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata ttcaaactgg
|
||||||
|
1021 cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc agattggtcg
|
||||||
|
1081 tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga tggacgccgt
|
||||||
|
1141 tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta ctgtagacat
|
||||||
|
1201 ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta agttcatgaa
|
||||||
|
1261 ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata ttgaccatgc
|
||||||
|
1321 cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt tgtttcaggg
|
||||||
|
1381 ttatttgaat atctataaca actattttaa agcgccgtgg atgcctgacc gtaccgaggc
|
||||||
|
1441 taaccctaat gagcttaatc aagatgatgc tcgttatggt ttccgttgct gccatctcaa
|
||||||
|
1501 aaacatttgg actgctccgc ttcctcctga gactgagctt tctcgccaaa tgacgacttc
|
||||||
|
1561 taccacatct attgacatta tgggtctgca agctgcttat gctaatttgc atactgacca
|
||||||
|
1621 agaacgtgat tacttcatgc agcgttacca tgatgttatt tcttcatttg gaggtaaaac
|
||||||
|
1681 ctcttatgac gctgacaacc gtcctttact tgtcatgcgc tctaatctct gggcatctgg
|
||||||
|
1741 ctatgatgtt gatggaactg accaaacgtc gttaggccag ttttctggtc gtgttcaaca
|
||||||
|
1801 gacctataaa cattctgtgc cgcgtttctt tgttcctgag catggcacta tgtttactct
|
||||||
|
1861 tgcgcttgtt cgttttccgc ctactgcgac taaagagatt cagtacctta acgctaaagg
|
||||||
|
1921 tgctttgact tataccgata ttgctggcga ccctgttttg tatggcaact tgccgccgcg
|
||||||
|
1981 tgaaatttct atgaaggatg ttttccgttc tggtgattcg tctaagaagt ttaagattgc
|
||||||
|
2041 tgagggtcag tggtatcgtt atgcgccttc gtatgtttct cctgcttatc accttcttga
|
||||||
|
2101 aggcttccca ttcattcagg aaccgccttc tggtgatttg caagaacgcg tacttattcg
|
||||||
|
2161 ccaccatgat tatgaccagt gtttccagtc cgttcagttg ttgcagtgga atagtcaggt
|
||||||
|
2221 taaatttaat gtgaccgttt atcgcaatct gccgaccact cgcgattcaa tcatgacttc
|
||||||
|
2281 gtgataaaag attgagtgtg aggttataac gccgaagcgg taaaaatttt aatttttgcc
|
||||||
|
2341 gctgaggggt tgaccaagcg aagcgcggta ggttttctgc ttaggagttt aatcatgttt
|
||||||
|
2401 cagactttta tttctcgcca taattcaaac tttttttctg ataagctggt tctcacttct
|
||||||
|
2461 gttactccag cttcttcggc acctgtttta cagacaccta aagctacatc gtcaacgtta
|
||||||
|
2521 tattttgata gtttgacggt taatgctggt aatggtggtt ttcttcattg cattcagatg
|
||||||
|
2581 gatacatctg tcaacgccgc taatcaggtt gtttctgttg gtgctgatat tgcttttgat
|
||||||
|
2641 gccgacccta aattttttgc ctgtttggtt cgctttgagt cttcttcggt tccgactacc
|
||||||
|
2701 ctcccgactg cctatgatgt ttatcctttg aatggtcgcc atgatggtgg ttattatacc
|
||||||
|
2761 gtcaaggact gtgtgactat tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt
|
||||||
|
2821 ggtttcatgg tttggtctaa ctttaccgct actaaatgcc gcggattggt ttcgctgaat
|
||||||
|
2881 caggttatta aagagattat ttgtctccag ccacttaagt gaggtgattt atgtttggtg
|
||||||
|
2941 ctattgctgg cggtattgct tctgctcttg ctggtggcgc catgtctaaa ttgtttggag
|
||||||
|
3001 gcggtcaaaa agccgcctcc ggtggcattc aaggtgatgt gcttgctacc gataacaata
|
||||||
|
3061 ctgtaggcat gggtgatgct ggtattaaat ctgccattca aggctctaat gttcctaacc
|
||||||
|
3121 ctgatgaggc cgcccctagt tttgtttctg gtgctatggc taaagctggt aaaggacttc
|
||||||
|
3181 ttgaaggtac gttgcaggct ggcacttctg ccgtttctga taagttgctt gatttggttg
|
||||||
|
3241 gacttggtgg caagtctgcc gctgataaag gaaaggatac tcgtgattat cttgctgctg
|
||||||
|
3301 catttcctga gcttaatgct tgggagcgtg ctggtgctga tgcttcctct gctggtatgg
|
||||||
|
3361 ttgacgccgg atttgagaat caaaaagagc ttactaaaat gcaactggac aatcagaaag
|
||||||
|
3421 agattgccga gatgcaaaat gagactcaaa aagagattgc tggcattcag tcggcgactt
|
||||||
|
3481 cacgccagaa tacgaaagac caggtatatg cacaaaatga gatgcttgct tatcaacaga
|
||||||
|
3541 aggagtctac tgctcgcgtt gcgtctatta tggaaaacac caatctttcc aagcaacagc
|
||||||
|
3601 aggtttccga gattatgcgc caaatgctta ctcaagctca aacggctggt cagtatttta
|
||||||
|
3661 ccaatgacca aatcaaagaa atgactcgca aggttagtgc tgaggttgac ttagttcatc
|
||||||
|
3721 agcaaacgca gaatcagcgg tatggctctt ctcatattgg cgctactgca aaggatattt
|
||||||
|
3781 ctaatgtcgt cactgatgct gcttctggtg tggttgatat ttttcatggt attgataaag
|
||||||
|
3841 ctgttgccga tacttggaac aatttctgga aagacggtaa agctgatggt attggctcta
|
||||||
|
3901 atttgtctag gaaataaccg tcaggattga caccctccca attgtatgtt ttcatgcctc
|
||||||
|
3961 caaatcttgg aggctttttt atggttcgtt cttattaccc ttctgaatgt cacgctgatt
|
||||||
|
4021 attttgactt tgagcgtatc gaggctctta aacctgctat tgaggcttgt ggcatttcta
|
||||||
|
4081 ctctttctca atccccaatg cttggcttcc ataagcagat ggataaccgc atcaagctct
|
||||||
|
4141 tggaagagat tctgtctttt cgtatgcagg gcgttgagtt cgataatggt gatatgtatg
|
||||||
|
4201 ttgacggcca taaggctgct tctgacgttc gtgatgagtt tgtatctgtt actgagaagt
|
||||||
|
4261 taatggatga attggcacaa tgctacaatg tgctccccca acttgatatt aataacacta
|
||||||
|
4321 tagaccaccg ccccgaaggg gacgaaaaat ggtttttaga gaacgagaag acggttacgc
|
||||||
|
4381 agttttgccg caagctggct gctgaacgcc ctcttaagga tattcgcgat gagtataatt
|
||||||
|
4441 accccaaaaa gaaaggtatt aaggatgagt gttcaagatt gctggaggcc tccactatga
|
||||||
|
4501 aatcgcgtag aggctttgct attcagcgtt tgatgaatgc aatgcgacag gctcatgctg
|
||||||
|
4561 atggttggtt tatcgttttt gacactctca cgttggctga cgaccgatta gaggcgtttt
|
||||||
|
4621 atgataatcc caatgctttg cgtgactatt ttcgtgatat tggtcgtatg gttcttgctg
|
||||||
|
4681 ccgagggtcg caaggctaat gattcacacg ccgactgcta tcagtatttt tgtgtgcctg
|
||||||
|
4741 agtatggtac agctaatggc cgtcttcatt tccatgcggt gcactttatg cggacacttc
|
||||||
|
4801 ctacaggtag cgttgaccct aattttggtc gtcgggtacg caatcgccgc cagttaaata
|
||||||
|
4861 gcttgcaaaa tacgtggcct tatggttaca gtatgcccat cgcagttcgc tacacgcagg
|
||||||
|
4921 acgctttttc acgttctggt tggttgtggc ctgttgatgc taaaggtgag ccgcttaaag
|
||||||
|
4981 ctaccagtta tatggctgtt ggtttctatg tggctaaata cgttaacaaa aagtcagata
|
||||||
|
5041 tggaccttgc tgctaaaggt ctaggagcta aagaatggaa caactcacta aaaaccaagc
|
||||||
|
5101 tgtcgctact tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa
|
||||||
|
5161 tgctcacaat gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg
|
||||||
|
5221 acgcgacgcc gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc
|
||||||
|
5281 tgggaaaagt tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca
|
||||||
|
5341 aatttatgcg cgcttcgata aaaatgattg gcgtatccaa cctgca
|
||||||
|
//
|
||||||
133
Tests/GFF/NC_001802.fna
Normal file
133
Tests/GFF/NC_001802.fna
Normal file
@ -0,0 +1,133 @@
|
|||||||
|
>gi|9629357|ref|NC_001802.1| Human immunodeficiency virus type 1, complete genome
|
||||||
|
GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCC
|
||||||
|
TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGA
|
||||||
|
TCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAA
|
||||||
|
AGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGG
|
||||||
|
CGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCG
|
||||||
|
TCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAAT
|
||||||
|
ATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGA
|
||||||
|
AACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTT
|
||||||
|
AGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGG
|
||||||
|
AAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACAC
|
||||||
|
AGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAG
|
||||||
|
GCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGA
|
||||||
|
TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGG
|
||||||
|
GGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTG
|
||||||
|
CATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAA
|
||||||
|
CTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTA
|
||||||
|
TAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATA
|
||||||
|
AGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG
|
||||||
|
CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGAC
|
||||||
|
TATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGA
|
||||||
|
CCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGC
|
||||||
|
AGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGC
|
||||||
|
CAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT
|
||||||
|
TGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC
|
||||||
|
TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCC
|
||||||
|
CCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAAC
|
||||||
|
GACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATAC
|
||||||
|
AGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATC
|
||||||
|
AAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAG
|
||||||
|
GACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCAT
|
||||||
|
TAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCA
|
||||||
|
TTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAA
|
||||||
|
AAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAG
|
||||||
|
AAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCA
|
||||||
|
CATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTC
|
||||||
|
CCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGAT
|
||||||
|
TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACA
|
||||||
|
AAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATG
|
||||||
|
TAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTG
|
||||||
|
GGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCAT
|
||||||
|
CCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGA
|
||||||
|
AGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACT
|
||||||
|
CCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAA
|
||||||
|
AACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAA
|
||||||
|
TACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGG
|
||||||
|
AAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATA
|
||||||
|
ACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGG
|
||||||
|
AAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTT
|
||||||
|
AGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCA
|
||||||
|
GCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCC
|
||||||
|
TAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGA
|
||||||
|
AGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCA
|
||||||
|
GAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCAC
|
||||||
|
ACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTT
|
||||||
|
AGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGAT
|
||||||
|
TTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAG
|
||||||
|
CCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGT
|
||||||
|
TATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAG
|
||||||
|
GAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCA
|
||||||
|
GCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCC
|
||||||
|
CTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTA
|
||||||
|
AGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAG
|
||||||
|
GGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGA
|
||||||
|
ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGG
|
||||||
|
AAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAG
|
||||||
|
TAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGC
|
||||||
|
AAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGC
|
||||||
|
TAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCA
|
||||||
|
CTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGG
|
||||||
|
GTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCA
|
||||||
|
ACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATA
|
||||||
|
GTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG
|
||||||
|
CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAA
|
||||||
|
CAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGC
|
||||||
|
TTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAAC
|
||||||
|
TTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTT
|
||||||
|
CAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGA
|
||||||
|
TCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA
|
||||||
|
AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGC
|
||||||
|
GGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGT
|
||||||
|
ACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
|
||||||
|
GTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATA
|
||||||
|
GACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGG
|
||||||
|
GGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC
|
||||||
|
AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCA
|
||||||
|
TATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAG
|
||||||
|
TAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGA
|
||||||
|
TATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAG
|
||||||
|
TGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGA
|
||||||
|
TAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA
|
||||||
|
TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTC
|
||||||
|
ATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTG
|
||||||
|
CGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATG
|
||||||
|
TACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTA
|
||||||
|
GTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAA
|
||||||
|
TTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT
|
||||||
|
TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAAC
|
||||||
|
ACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAAT
|
||||||
|
CCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTC
|
||||||
|
AACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGA
|
||||||
|
AGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAA
|
||||||
|
TGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA
|
||||||
|
TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGA
|
||||||
|
AGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAA
|
||||||
|
GAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGG
|
||||||
|
AAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAG
|
||||||
|
CAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCA
|
||||||
|
AGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG
|
||||||
|
TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAA
|
||||||
|
CAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACT
|
||||||
|
CCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGC
|
||||||
|
AAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGA
|
||||||
|
GGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCAC
|
||||||
|
CATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG
|
||||||
|
TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTG
|
||||||
|
CGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAAC
|
||||||
|
TTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACT
|
||||||
|
AAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATA
|
||||||
|
GAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGA
|
||||||
|
TTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA
|
||||||
|
TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAAT
|
||||||
|
CACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTG
|
||||||
|
GGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACT
|
||||||
|
TTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTG
|
||||||
|
GATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCA
|
||||||
|
CTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG
|
||||||
|
AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTG
|
||||||
|
GAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGC
|
||||||
|
TGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTG
|
||||||
|
GGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAG
|
||||||
|
ACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCC
|
||||||
|
TTGAGTGCTTC
|
||||||
133
Tests/GFF/NC_001802lc.fna
Normal file
133
Tests/GFF/NC_001802lc.fna
Normal file
@ -0,0 +1,133 @@
|
|||||||
|
>gi|9629357|ref|nc_001802.1| human immunodeficiency virus type 1, complete genome
|
||||||
|
ggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaacccactgcttaagcc
|
||||||
|
tcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttgtgtgactctggtaactagaga
|
||||||
|
tccctcagacccttttagtcagtgtggaaaatctctagcagtggcgcccgaacagggacctgaaagcgaa
|
||||||
|
agggaaaccagaggagctctctcgacgcaggactcggcttgctgaagcgcgcacggcaagaggcgagggg
|
||||||
|
cggcgactggtgagtacgccaaaaattttgactagcggaggctagaaggagagagatgggtgcgagagcg
|
||||||
|
tcagtattaagcgggggagaattagatcgatgggaaaaaattcggttaaggccagggggaaagaaaaaat
|
||||||
|
ataaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttaga
|
||||||
|
aacatcagaaggctgtagacaaatactgggacagctacaaccatcccttcagacaggatcagaagaactt
|
||||||
|
agatcattatataatacagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaagg
|
||||||
|
aagctttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcagcagctgacac
|
||||||
|
aggacacagcaatcaggtcagccaaaattaccctatagtgcagaacatccaggggcaaatggtacatcag
|
||||||
|
gccatatcacctagaactttaaatgcatgggtaaaagtagtagaagagaaggctttcagcccagaagtga
|
||||||
|
tacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggg
|
||||||
|
gggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagagtg
|
||||||
|
catccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaa
|
||||||
|
ctactagtacccttcaggaacaaataggatggatgacaaataatccacctatcccagtaggagaaattta
|
||||||
|
taaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacata
|
||||||
|
agacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaag
|
||||||
|
cttcacaggaggtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaagac
|
||||||
|
tattttaaaagcattgggaccagcggctacactagaagaaatgatgacagcatgtcagggagtaggagga
|
||||||
|
cccggccataaggcaagagttttggctgaagcaatgagccaagtaacaaattcagctaccataatgatgc
|
||||||
|
agagaggcaattttaggaaccaaagaaagattgttaagtgtttcaattgtggcaaagaagggcacacagc
|
||||||
|
cagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagat
|
||||||
|
tgtactgagagacaggctaattttttagggaagatctggccttcctacaagggaaggccagggaattttc
|
||||||
|
ttcagagcagaccagagccaacagccccaccagaagagagcttcaggtctggggtagagacaacaactcc
|
||||||
|
ccctcagaagcaggagccgatagacaaggaactgtatcctttaacttccctcaggtcactctttggcaac
|
||||||
|
gacccctcgtcacaataaagataggggggcaactaaaggaagctctattagatacaggagcagatgatac
|
||||||
|
agtattagaagaaatgagtttgccaggaagatggaaaccaaaaatgatagggggaattggaggttttatc
|
||||||
|
aaagtaagacagtatgatcagatactcatagaaatctgtggacataaagctataggtacagtattagtag
|
||||||
|
gacctacacctgtcaacataattggaagaaatctgttgactcagattggttgcactttaaattttcccat
|
||||||
|
tagccctattgagactgtaccagtaaaattaaagccaggaatggatggcccaaaagttaaacaatggcca
|
||||||
|
ttgacagaagaaaaaataaaagcattagtagaaatttgtacagagatggaaaaggaagggaaaatttcaa
|
||||||
|
aaattgggcctgaaaatccatacaatactccagtatttgccataaagaaaaaagacagtactaaatggag
|
||||||
|
aaaattagtagatttcagagaacttaataagagaactcaagacttctgggaagttcaattaggaatacca
|
||||||
|
catcccgcagggttaaaaaagaaaaaatcagtaacagtactggatgtgggtgatgcatatttttcagttc
|
||||||
|
ccttagatgaagacttcaggaagtatactgcatttaccatacctagtataaacaatgagacaccagggat
|
||||||
|
tagatatcagtacaatgtgcttccacagggatggaaaggatcaccagcaatattccaaagtagcatgaca
|
||||||
|
aaaatcttagagccttttagaaaacaaaatccagacatagttatctatcaatacatggatgatttgtatg
|
||||||
|
taggatctgacttagaaatagggcagcatagaacaaaaatagaggagctgagacaacatctgttgaggtg
|
||||||
|
gggacttaccacaccagacaaaaaacatcagaaagaacctccattcctttggatgggttatgaactccat
|
||||||
|
cctgataaatggacagtacagcctatagtgctgccagaaaaagacagctggactgtcaatgacatacaga
|
||||||
|
agttagtggggaaattgaattgggcaagtcagatttacccagggattaaagtaaggcaattatgtaaact
|
||||||
|
ccttagaggaaccaaagcactaacagaagtaataccactaacagaagaagcagagctagaactggcagaa
|
||||||
|
aacagagagattctaaaagaaccagtacatggagtgtattatgacccatcaaaagacttaatagcagaaa
|
||||||
|
tacagaagcaggggcaaggccaatggacatatcaaatttatcaagagccatttaaaaatctgaaaacagg
|
||||||
|
aaaatatgcaagaatgaggggtgcccacactaatgatgtaaaacaattaacagaggcagtgcaaaaaata
|
||||||
|
accacagaaagcatagtaatatggggaaagactcctaaatttaaactgcccatacaaaaggaaacatggg
|
||||||
|
aaacatggtggacagagtattggcaagccacctggattcctgagtgggagtttgttaatacccctccctt
|
||||||
|
agtgaaattatggtaccagttagagaaagaacccatagtaggagcagaaaccttctatgtagatggggca
|
||||||
|
gctaacagggagactaaattaggaaaagcaggatatgttactaatagaggaagacaaaaagttgtcaccc
|
||||||
|
taactgacacaacaaatcagaagactgagttacaagcaatttatctagctttgcaggattcgggattaga
|
||||||
|
agtaaacatagtaacagactcacaatatgcattaggaatcattcaagcacaaccagatcaaagtgaatca
|
||||||
|
gagttagtcaatcaaataatagagcagttaataaaaaaggaaaaggtctatctggcatgggtaccagcac
|
||||||
|
acaaaggaattggaggaaatgaacaagtagataaattagtcagtgctggaatcaggaaagtactattttt
|
||||||
|
agatggaatagataaggcccaagatgaacatgagaaatatcacagtaattggagagcaatggctagtgat
|
||||||
|
tttaacctgccacctgtagtagcaaaagaaatagtagccagctgtgataaatgtcagctaaaaggagaag
|
||||||
|
ccatgcatggacaagtagactgtagtccaggaatatggcaactagattgtacacatttagaaggaaaagt
|
||||||
|
tatcctggtagcagttcatgtagccagtggatatatagaagcagaagttattccagcagaaacagggcag
|
||||||
|
gaaacagcatattttcttttaaaattagcaggaagatggccagtaaaaacaatacatactgacaatggca
|
||||||
|
gcaatttcaccggtgctacggttagggccgcctgttggtgggcgggaatcaagcaggaatttggaattcc
|
||||||
|
ctacaatccccaaagtcaaggagtagtagaatctatgaataaagaattaaagaaaattataggacaggta
|
||||||
|
agagatcaggctgaacatcttaagacagcagtacaaatggcagtattcatccacaattttaaaagaaaag
|
||||||
|
gggggattggggggtacagtgcaggggaaagaatagtagacataatagcaacagacatacaaactaaaga
|
||||||
|
attacaaaaacaaattacaaaaattcaaaattttcgggtttattacagggacagcagaaatccactttgg
|
||||||
|
aaaggaccagcaaagctcctctggaaaggtgaaggggcagtagtaatacaagataatagtgacataaaag
|
||||||
|
tagtgccaagaagaaaagcaaagatcattagggattatggaaaacagatggcaggtgatgattgtgtggc
|
||||||
|
aagtagacaggatgaggattagaacatggaaaagtttagtaaaacaccatatgtatgtttcagggaaagc
|
||||||
|
taggggatggttttatagacatcactatgaaagccctcatccaagaataagttcagaagtacacatccca
|
||||||
|
ctaggggatgctagattggtaataacaacatattggggtctgcatacaggagaaagagactggcatttgg
|
||||||
|
gtcagggagtctccatagaatggaggaaaaagagatatagcacacaagtagaccctgaactagcagacca
|
||||||
|
actaattcatctgtattactttgactgtttttcagactctgctataagaaaggccttattaggacacata
|
||||||
|
gttagccctaggtgtgaatatcaagcaggacataacaaggtaggatctctacaatacttggcactagcag
|
||||||
|
cattaataacaccaaaaaagataaagccacctttgcctagtgttacgaaactgacagaggatagatggaa
|
||||||
|
caagccccagaagaccaagggccacagagggagccacacaatgaatggacactagagcttttagaggagc
|
||||||
|
ttaagaatgaagctgttagacattttcctaggatttggctccatggcttagggcaacatatctatgaaac
|
||||||
|
ttatggggatacttgggcaggagtggaagccataataagaattctgcaacaactgctgtttatccatttt
|
||||||
|
cagaattgggtgtcgacatagcagaataggcgttactcgacagaggagagcaagaaatggagccagtaga
|
||||||
|
tcctagactagagccctggaagcatccaggaagtcagcctaaaactgcttgtaccaattgctattgtaaa
|
||||||
|
aagtgttgctttcattgccaagtttgtttcataacaaaagccttaggcatctcctatggcaggaagaagc
|
||||||
|
ggagacagcgacgaagagctcatcagaacagtcagactcatcaagcttctctatcaaagcagtaagtagt
|
||||||
|
acatgtaatgcaacctataccaatagtagcaatagtagcattagtagtagcaataataatagcaatagtt
|
||||||
|
gtgtggtccatagtaatcatagaatataggaaaatattaagacaaagaaaaatagacaggttaattgata
|
||||||
|
gactaatagaaagagcagaagacagtggcaatgagagtgaaggagaaatatcagcacttgtggagatggg
|
||||||
|
ggtggagatggggcaccatgctccttgggatgttgatgatctgtagtgctacagaaaaattgtgggtcac
|
||||||
|
agtctattatggggtacctgtgtggaaggaagcaaccaccactctattttgtgcatcagatgctaaagca
|
||||||
|
tatgatacagaggtacataatgtttgggccacacatgcctgtgtacccacagaccccaacccacaagaag
|
||||||
|
tagtattggtaaatgtgacagaaaattttaacatgtggaaaaatgacatggtagaacagatgcatgagga
|
||||||
|
tataatcagtttatgggatcaaagcctaaagccatgtgtaaaattaaccccactctgtgttagtttaaag
|
||||||
|
tgcactgatttgaagaatgatactaataccaatagtagtagcgggagaatgataatggagaaaggagaga
|
||||||
|
taaaaaactgctctttcaatatcagcacaagcataagaggtaaggtgcagaaagaatatgcattttttta
|
||||||
|
taaacttgatataataccaatagataatgatactaccagctataagttgacaagttgtaacacctcagtc
|
||||||
|
attacacaggcctgtccaaaggtatcctttgagccaattcccatacattattgtgccccggctggttttg
|
||||||
|
cgattctaaaatgtaataataagacgttcaatggaacaggaccatgtacaaatgtcagcacagtacaatg
|
||||||
|
tacacatggaattaggccagtagtatcaactcaactgctgttaaatggcagtctagcagaagaagaggta
|
||||||
|
gtaattagatctgtcaatttcacggacaatgctaaaaccataatagtacagctgaacacatctgtagaaa
|
||||||
|
ttaattgtacaagacccaacaacaatacaagaaaaagaatccgtatccagagaggaccagggagagcatt
|
||||||
|
tgttacaataggaaaaataggaaatatgagacaagcacattgtaacattagtagagcaaaatggaataac
|
||||||
|
actttaaaacagatagctagcaaattaagagaacaatttggaaataataaaacaataatctttaagcaat
|
||||||
|
cctcaggaggggacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattc
|
||||||
|
aacacaactgtttaatagtacttggtttaatagtacttggagtactgaagggtcaaataacactgaagga
|
||||||
|
agtgacacaatcaccctcccatgcagaataaaacaaattataaacatgtggcagaaagtaggaaaagcaa
|
||||||
|
tgtatgcccctcccatcagtggacaaattagatgttcatcaaatattacagggctgctattaacaagaga
|
||||||
|
tggtggtaatagcaacaatgagtccgagatcttcagacctggaggaggagatatgagggacaattggaga
|
||||||
|
agtgaattatataaatataaagtagtaaaaattgaaccattaggagtagcacccaccaaggcaaagagaa
|
||||||
|
gagtggtgcagagagaaaaaagagcagtgggaataggagctttgttccttgggttcttgggagcagcagg
|
||||||
|
aagcactatgggcgcagcctcaatgacgctgacggtacaggccagacaattattgtctggtatagtgcag
|
||||||
|
cagcagaacaatttgctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatca
|
||||||
|
agcagctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctggggatttgggg
|
||||||
|
ttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttggagtaataaatctctggaa
|
||||||
|
cagatttggaatcacacgacctggatggagtgggacagagaaattaacaattacacaagcttaatacact
|
||||||
|
ccttaattgaagaatcgcaaaaccagcaagaaaagaatgaacaagaattattggaattagataaatgggc
|
||||||
|
aagtttgtggaattggtttaacataacaaattggctgtggtatataaaattattcataatgatagtagga
|
||||||
|
ggcttggtaggtttaagaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcac
|
||||||
|
cattatcgtttcagacccacctcccaaccccgaggggacccgacaggcccgaaggaatagaagaagaagg
|
||||||
|
tggagagagagacagagacagatccattcgattagtgaacggatccttggcacttatctgggacgatctg
|
||||||
|
cggagcctgtgcctcttcagctaccaccgcttgagagacttactcttgattgtaacgaggattgtggaac
|
||||||
|
ttctgggacgcagggggtgggaagccctcaaatattggtggaatctcctacagtattggagtcaggaact
|
||||||
|
aaagaatagtgctgttagcttgctcaatgccacagccatagcagtagctgaggggacagatagggttata
|
||||||
|
gaagtagtacaaggagcttgtagagctattcgccacatacctagaagaataagacagggcttggaaagga
|
||||||
|
ttttgctataagatgggtggcaagtggtcaaaaagtagtgtgattggatggcctactgtaagggaaagaa
|
||||||
|
tgagacgagctgagccagcagcagatagggtgggagcagcatctcgagacctggaaaaacatggagcaat
|
||||||
|
cacaagtagcaatacagcagctaccaatgctgcttgtgcctggctagaagcacaagaggaggaggaggtg
|
||||||
|
ggttttccagtcacacctcaggtacctttaagaccaatgacttacaaggcagctgtagatcttagccact
|
||||||
|
ttttaaaagaaaaggggggactggaagggctaattcactcccaaagaagacaagatatccttgatctgtg
|
||||||
|
gatctaccacacacaaggctacttccctgattagcagaactacacaccagggccaggggtcagatatcca
|
||||||
|
ctgacctttggatggtgctacaagctagtaccagttgagccagataagatagaagaggccaataaaggag
|
||||||
|
agaacaccagcttgttacaccctgtgagcctgcatgggatggatgacccggagagagaagtgttagagtg
|
||||||
|
gaggtttgacagccgcctagcatttcatcacgtggcccgagagctgcatccggagtacttcaagaactgc
|
||||||
|
tgacatcgagcttgctacaagggactttccgctggggactttccagggaggcgtggcctgggcgggactg
|
||||||
|
gggagtggcgagccctcagatcctgcatataagcagctgctttttgcctgtactgggtctctctggttag
|
||||||
|
accagatctgagcctgggagctctctggctaactagggaacccactgcttaagcctcaataaagcttgcc
|
||||||
|
ttgagtgcttc
|
||||||
133
Tests/GFF/NC_001802x.fna
Normal file
133
Tests/GFF/NC_001802x.fna
Normal file
@ -0,0 +1,133 @@
|
|||||||
|
>gi|9629357|ref|NC_001802.1| Human immunodeficiency virus type 1, complete genome
|
||||||
|
GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCC
|
||||||
|
TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGA
|
||||||
|
TCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAA
|
||||||
|
AGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGG
|
||||||
|
CGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCG
|
||||||
|
TCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAAT
|
||||||
|
ATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGA
|
||||||
|
AACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTT
|
||||||
|
AGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGG
|
||||||
|
AAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACAC
|
||||||
|
AGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAG
|
||||||
|
GCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGA
|
||||||
|
TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGG
|
||||||
|
GGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTG
|
||||||
|
CATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAA
|
||||||
|
CTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTA
|
||||||
|
TAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATA
|
||||||
|
AGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG
|
||||||
|
CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGAC
|
||||||
|
TATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGA
|
||||||
|
CCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGC
|
||||||
|
AGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGC
|
||||||
|
CAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT
|
||||||
|
TGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC
|
||||||
|
TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCC
|
||||||
|
CCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAAC
|
||||||
|
GACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATAC
|
||||||
|
AGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATC
|
||||||
|
AAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAG
|
||||||
|
GACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCAT
|
||||||
|
TAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCA
|
||||||
|
TTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAA
|
||||||
|
AAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAG
|
||||||
|
AAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCA
|
||||||
|
CATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTC
|
||||||
|
CCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGAT
|
||||||
|
TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACA
|
||||||
|
AAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATG
|
||||||
|
TAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTG
|
||||||
|
GGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCAT
|
||||||
|
CCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGA
|
||||||
|
AGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACT
|
||||||
|
CCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAA
|
||||||
|
AACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAA
|
||||||
|
TACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGG
|
||||||
|
AAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATA
|
||||||
|
ACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGG
|
||||||
|
AAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTT
|
||||||
|
AGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCA
|
||||||
|
GCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCC
|
||||||
|
TAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGA
|
||||||
|
AGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCA
|
||||||
|
GAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCAC
|
||||||
|
ACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTT
|
||||||
|
AGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGAT
|
||||||
|
TTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAG
|
||||||
|
CCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGT
|
||||||
|
TATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAG
|
||||||
|
GAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCA
|
||||||
|
GCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCC
|
||||||
|
CTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTA
|
||||||
|
AGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAG
|
||||||
|
GGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGA
|
||||||
|
ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGG
|
||||||
|
AAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAG
|
||||||
|
TAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGC
|
||||||
|
AAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGC
|
||||||
|
TAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCA
|
||||||
|
CTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGG
|
||||||
|
GTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCA
|
||||||
|
ACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATA
|
||||||
|
GTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG
|
||||||
|
CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAA
|
||||||
|
CAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGC
|
||||||
|
TTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAAC
|
||||||
|
TTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTT
|
||||||
|
CAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGA
|
||||||
|
TCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA
|
||||||
|
AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGC
|
||||||
|
GGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGT
|
||||||
|
ACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
|
||||||
|
GTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATA
|
||||||
|
GACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGG
|
||||||
|
GGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC
|
||||||
|
AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCA
|
||||||
|
TATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAG
|
||||||
|
TAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGA
|
||||||
|
TATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAG
|
||||||
|
TGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGA
|
||||||
|
TAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA
|
||||||
|
TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTC
|
||||||
|
ATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTG
|
||||||
|
CGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATG
|
||||||
|
TACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTA
|
||||||
|
GTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAA
|
||||||
|
TTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT
|
||||||
|
TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAAC
|
||||||
|
ACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAAT
|
||||||
|
CCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTC
|
||||||
|
AACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGA
|
||||||
|
AGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAA
|
||||||
|
TGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA
|
||||||
|
TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGA
|
||||||
|
AGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAA
|
||||||
|
GAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGG
|
||||||
|
AAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAG
|
||||||
|
CAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCA
|
||||||
|
AGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG
|
||||||
|
TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAA
|
||||||
|
CAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACT
|
||||||
|
CCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGC
|
||||||
|
AAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGA
|
||||||
|
GGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCAC
|
||||||
|
CATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG
|
||||||
|
TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTG
|
||||||
|
CGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAAC
|
||||||
|
TTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACT
|
||||||
|
AAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATA
|
||||||
|
GAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGA
|
||||||
|
TTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA
|
||||||
|
TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAAT
|
||||||
|
CACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTG
|
||||||
|
GGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACT
|
||||||
|
TTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTG
|
||||||
|
GATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCA
|
||||||
|
CTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG
|
||||||
|
AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTG
|
||||||
|
GAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGC
|
||||||
|
TGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTG
|
||||||
|
GGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAG
|
||||||
|
ACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCC
|
||||||
|
TTGAGTGCTTC
|
||||||
6
Tests/GFF/multi.fna
Normal file
6
Tests/GFF/multi.fna
Normal file
@ -0,0 +1,6 @@
|
|||||||
|
>test1 description
|
||||||
|
ACGTCGCG
|
||||||
|
>test2 description
|
||||||
|
GGGGCCCC
|
||||||
|
>test3 description
|
||||||
|
AAACACAC
|
||||||
Reference in New Issue
Block a user