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Support files for test_GFF
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grouse
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Tests/GFF/NC_001422.gbk
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Tests/GFF/NC_001422.gbk
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LOCUS NC_001422 5386 bp ss-DNA circular PHG 09-JUL-2002
|
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DEFINITION Coliphage phiX174, complete genome.
|
||||
ACCESSION NC_001422
|
||||
VERSION NC_001422.1 GI:9626372
|
||||
KEYWORDS .
|
||||
SOURCE coliphage phiX174.
|
||||
ORGANISM coliphage phiX174
|
||||
Viruses; ssDNA viruses; Microviridae; Microvirus.
|
||||
REFERENCE 1 (bases 1047 to 1094)
|
||||
AUTHORS Ziff,E.B., Sedat,J.W. and Galibert,F.
|
||||
TITLE Determination of the nucleotide sequence of a fragment of
|
||||
bacteriophage phiX 174 DNA
|
||||
JOURNAL Nature New Biol. 241 (106), 34-37 (1973)
|
||||
MEDLINE 73161741
|
||||
PUBMED 4349156
|
||||
REFERENCE 2 (bases 2370 to 2421)
|
||||
AUTHORS Robertson,H.D., Barrell,B.G., Weith,H.L. and Donelson,J.E.
|
||||
TITLE Isolation and sequence analysis of a ribosome-protected fragment
|
||||
from bacteriophage phiX 174 DNA
|
||||
JOURNAL Nature New Biol. 241 (106), 38-40 (1973)
|
||||
MEDLINE 73161742
|
||||
PUBMED 4572838
|
||||
REFERENCE 3 (bases 2370 to 2420)
|
||||
AUTHORS Barrell,B.G., Weith,H.L., Donelson,J.E. and Robertson,H.D.
|
||||
TITLE Sequence analysis of the ribosome-protected bacteriophase phiX174
|
||||
DNA fragment containing the gene G initiation site
|
||||
JOURNAL J. Mol. Biol. 92 (3), 377-393 (1975)
|
||||
MEDLINE 75192039
|
||||
PUBMED 1095758
|
||||
REFERENCE 4 (bases 2365 to 2591)
|
||||
AUTHORS Air,G.M., Blackburn,E.H., Sanger,F. and Coulson,A.R.
|
||||
TITLE The nucleotide and amino acid sequences of the N (5') terminal
|
||||
region of gene G of bacteriophage phiphiX 174
|
||||
JOURNAL J. Mol. Biol. 96 (4), 703-719 (1975)
|
||||
MEDLINE 76072037
|
||||
PUBMED 1081600
|
||||
REFERENCE 5 (bases 2263 to 2421)
|
||||
AUTHORS Fiddes,J.C.
|
||||
TITLE Nucleotide sequence of the intercistronic region between genes G
|
||||
and F in bacteriophage phiX174 DNA
|
||||
JOURNAL J. Mol. Biol. 107 (1), 1-24 (1976)
|
||||
MEDLINE 77074135
|
||||
PUBMED 826639
|
||||
REFERENCE 6 (bases 4137 to 4207)
|
||||
AUTHORS Mansfeld,A.D., Vereijken,J.M. and Jansz,H.S.
|
||||
TITLE The nucleotide sequence of a DNA fragment, 71 base pairs in length,
|
||||
near the origin of DNA replication of bacteriophage 0X174
|
||||
JOURNAL Nucleic Acids Res. 3 (10), 2827-2844 (1976)
|
||||
MEDLINE 77057432
|
||||
PUBMED 995652
|
||||
REFERENCE 7 (bases 730 to 903)
|
||||
AUTHORS Blackburn,E.H.
|
||||
TITLE Transcription and sequence analysis of a fragment of bacteriophage
|
||||
phiX174 DNA
|
||||
JOURNAL J. Mol. Biol. 107 (4), 417-431 (1976)
|
||||
MEDLINE 77074161
|
||||
PUBMED 826641
|
||||
REFERENCE 8 (bases 1017 to 1081)
|
||||
AUTHORS Sedat,J., Ziff,E. and Galibert,F.
|
||||
TITLE Direct determination of DNA nucleotide sequences. Structure of
|
||||
large specific fragments of bacteriophage phiX174 DNA
|
||||
JOURNAL J. Mol. Biol. 107 (4), 391-416 (1976)
|
||||
MEDLINE 77074160
|
||||
PUBMED 1003475
|
||||
REFERENCE 9 (bases 1017 to 1762)
|
||||
AUTHORS Air,G.M., Blackburn,E.H., Coulson,A.R., Galibert,F., Sanger,F.,
|
||||
Sedat,J.W. and Ziff,E.B.
|
||||
TITLE Gene F of bacteriophage phiX174. Correlation of nucleotide
|
||||
sequences from the DNA and amino acid sequences from the gene
|
||||
product
|
||||
JOURNAL J. Mol. Biol. 107 (4), 445-458 (1976)
|
||||
MEDLINE 77074163
|
||||
PUBMED 1088826
|
||||
REFERENCE 10 (bases 2395 to 2922)
|
||||
AUTHORS Air,G.M., Sanger,F. and Coulson,A.R.
|
||||
TITLE Nucleotide and amino acid sequences of gene G of omegaX174
|
||||
JOURNAL J. Mol. Biol. 108 (3), 519-533 (1976)
|
||||
MEDLINE 77121207
|
||||
PUBMED 1088827
|
||||
REFERENCE 11 (bases 5022 to 5132)
|
||||
AUTHORS Brown,N.L. and Smith,M.
|
||||
TITLE DNA sequence of a region of the phi X174 genome coding for a
|
||||
ribosome binding site
|
||||
JOURNAL Nature 265 (5596), 695-698 (1977)
|
||||
MEDLINE 77171176
|
||||
PUBMED 859573
|
||||
REFERENCE 12 (bases 5346 to 5386; 1 to 159)
|
||||
AUTHORS Smith,M., Brown,N.L., Air,G.M., Barrell,B.G., Coulson,A.R.,
|
||||
Hutchison,C.A. III and Sanger,F.
|
||||
TITLE DNA sequence at the C termini of the overlapping genes A and B in
|
||||
bacteriophage phi X174
|
||||
JOURNAL Nature 265 (5596), 702-705 (1977)
|
||||
MEDLINE 77171178
|
||||
PUBMED 859575
|
||||
REFERENCE 13 (bases 1 to 5375)
|
||||
AUTHORS Sanger,F., Air,G.M., Barrell,B.G., Brown,N.L., Coulson,A.R.,
|
||||
Fiddes,C.A., Hutchison,C.A., Slocombe,P.M. and Smith,M.
|
||||
TITLE Nucliotide sequence of bacteriophage phi X174 DNA
|
||||
JOURNAL Nature 265 (5596), 687-695 (1977)
|
||||
MEDLINE 77171175
|
||||
PUBMED 870828
|
||||
REFERENCE 14 (bases 4505 to 5374)
|
||||
AUTHORS Brown,N.L. and Smith,M.
|
||||
TITLE The sequence of a region of bacteriophage phiX174 DNA coding for
|
||||
parts of genes A and B
|
||||
JOURNAL J. Mol. Biol. 116 (1), 1-28 (1977)
|
||||
MEDLINE 78069208
|
||||
PUBMED 592379
|
||||
REFERENCE 15 (sites)
|
||||
AUTHORS Fiddes,J.C.
|
||||
TITLE The nucleotide sequence of a viral DNA
|
||||
JOURNAL Sci. Am. 237 (6), 54-67 (1977)
|
||||
MEDLINE 78054683
|
||||
PUBMED 929160
|
||||
REFERENCE 16 (bases 1 to 5386)
|
||||
AUTHORS Sanger,F., Coulson,A.R., Friedmann,T., Air,G.M., Barrell,B.G.,
|
||||
Brown,N.L., Fiddes,J.C., Hutchison,C.A. III, Slocombe,P.M. and
|
||||
Smith,M.
|
||||
TITLE The nucleotide sequence of bacteriophage phiX174
|
||||
JOURNAL J. Mol. Biol. 125 (2), 225-246 (1978)
|
||||
MEDLINE 79091185
|
||||
PUBMED 731693
|
||||
REFERENCE 17 (bases 1290 to 1302; 1340 to 1430; 1510 to 1570; 1600 to 1750)
|
||||
AUTHORS Air,G.M., Coulson,A.R., Fiddes,J.C., Friedmann,T., Hutchison,C.A.
|
||||
III, Sanger,F., Slocombe,P.M. and Smith,A.J.
|
||||
TITLE Nucleotide sequence of the F protein coding region of bacteriophage
|
||||
phiX174 and the amino acid sequence of its product
|
||||
JOURNAL J. Mol. Biol. 125 (2), 247-254 (1978)
|
||||
MEDLINE 79091186
|
||||
PUBMED 731694
|
||||
REFERENCE 18 (bases 4256 to 4317)
|
||||
AUTHORS Langeveld,S.A., van Mansfeld,A.D., de Winter,J.M. and Weisbeek,P.J.
|
||||
TITLE Cleavage of single-stranded DNA by the A and A* proteins of
|
||||
bacteriophage phi X174
|
||||
JOURNAL Nucleic Acids Res. 7 (8), 2177-2188 (1979)
|
||||
MEDLINE 80101074
|
||||
PUBMED 160544
|
||||
REFERENCE 19 (bases 4248 to 4332)
|
||||
AUTHORS Heidekamp,F., Langeveld,S.A., Baas,P.D. and Jansz,H.S.
|
||||
TITLE Studies of the recognition sequence of phi X174 gene A protein.
|
||||
Cleavage site of phi X gene A protein in St-1 RFI DNA
|
||||
JOURNAL Nucleic Acids Res. 8 (9), 2009-2021 (1980)
|
||||
MEDLINE 81053861
|
||||
PUBMED 6253953
|
||||
REFERENCE 20 (bases 436 to 490; 630 to 669; 930 to 979)
|
||||
AUTHORS Takeshita,M., Kappen,L.S., Grollman,A.P., Eisenberg,M. and
|
||||
Goldberg,I.H.
|
||||
TITLE Strand scission of deoxyribonucleic acid by neocarzinostatin,
|
||||
auromomycin, and bleomycin: studies on base release and nucleotide
|
||||
sequence specificity
|
||||
JOURNAL Biochemistry (N.Y.) 20 (26), 7599-7606 (1981)
|
||||
MEDLINE 82113627
|
||||
PUBMED 6173064
|
||||
REFERENCE 21 (bases 449 to 482; 504 to 598; 1047 to 1111)
|
||||
AUTHORS Ueda,K., Morita,J. and Komano,T.
|
||||
TITLE Sequence specificity of heat-labile sites in DNA induced by
|
||||
mitomycin C
|
||||
JOURNAL Biochemistry (N.Y.) 23 (8), 1634-1640 (1984)
|
||||
MEDLINE 84203526
|
||||
PUBMED 6232949
|
||||
REFERENCE 22 (bases 1064 to 1757)
|
||||
AUTHORS Merville,M.P., Piette,J., Lopez,M., Decuyper,J. and van de Vorst,A.
|
||||
TITLE Termination sites of the in vitro DNA synthesis on single-stranded
|
||||
DNA photosensitized by promazines
|
||||
JOURNAL J. Biol. Chem. 259 (24), 15069-15077 (1984)
|
||||
MEDLINE 85079985
|
||||
PUBMED 6239864
|
||||
REFERENCE 23 (bases 2380 to 2512; 2593 to 2786; 2788 to 2947)
|
||||
AUTHORS Air,G.M., Els,M.C., Brown,L.E., Laver,W.G. and Webster,R.G.
|
||||
TITLE Location of antigenic sites on the three-dimensional structure of
|
||||
the influenza N2 virus neuraminidase
|
||||
JOURNAL Virology 145 (2), 237-248 (1985)
|
||||
MEDLINE 85274373
|
||||
PUBMED 2411049
|
||||
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
|
||||
reference sequence was derived from J02482.
|
||||
[8] intermittent sequences.
|
||||
[15] review; discussion of complete genome.
|
||||
Double checked with sumex tape.
|
||||
Single-stranded circular DNA which codes for eleven proteins.
|
||||
Replicative form is duplex, icosahedron, related to s13 & g4. [21]
|
||||
indicates that mitomycin C reduced with sodium borohydride induced
|
||||
heat-labile sites in DNA most preferentially at dinucleotide
|
||||
sequence 'gt' (especially 'Pu-g-t').
|
||||
Bacteriophage phi-X174 single stranded DNA molecules were
|
||||
irradiated with near UV light in the presence of promazine
|
||||
derivatives, after priming with restriction fragments or synthetic
|
||||
primers [22]. The resulting DNA fragments were used as templates
|
||||
for in vitro complementary chain synthesis by E.coli DNA polymerase
|
||||
I [22]. More than 90% of the observed chain terminations were
|
||||
mapped one nucleotide before a guanine residue [22]. Photoreaction
|
||||
occurred more predominantly with guanine residues localized in
|
||||
single-stranded parts of the genome [22]. These same guanine
|
||||
residues could also be damaged when the reaction was performed in
|
||||
the dark, in the presence of promazine cation radicals [22].
|
||||
FEATURES Location/Qualifiers
|
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source 1..5386
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/organism="coliphage phiX174"
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/specific_host="Escherichia coli"
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||||
/db_xref="taxon:10847"
|
||||
CDS join(3981..5386,1..136)
|
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/codon_start=1
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||||
/transl_table=11
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||||
/product="rf replication, viral strand synthesis protein"
|
||||
/protein_id="NP_040703.1"
|
||||
/db_xref="GI:9626373"
|
||||
/translation="MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFH
|
||||
KQMDNRIKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQCY
|
||||
NVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNYPKKKGI
|
||||
KDECSRLLEASTMKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPN
|
||||
ALRDYFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPTG
|
||||
SVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKA
|
||||
TSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGM
|
||||
KMLTMTNLSTECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT
|
||||
NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKW
|
||||
TAGGK"
|
||||
CDS join(4497..5386,1..136)
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="shut off host DNA synthesis protein"
|
||||
/protein_id="NP_040704.1"
|
||||
/db_xref="GI:9626374"
|
||||
/translation="MKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDN
|
||||
PNALRDYFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLP
|
||||
TGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPL
|
||||
KATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNF
|
||||
GMKMLTMTNLSTECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPV
|
||||
TTNLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKS
|
||||
KWTAGGK"
|
||||
CDS join(5075..5386,1..51)
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="capsid morphogenesis protein"
|
||||
/protein_id="NP_040705.1"
|
||||
/db_xref="GI:9626375"
|
||||
/translation="MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTY
|
||||
QAGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQ
|
||||
PAEFYRFHDAEVNTFGYF"
|
||||
variation 23
|
||||
/note="c in wt; t in am18 and am35 [14]"
|
||||
variation 25
|
||||
/note="g in wt; c in ts116 [14]"
|
||||
CDS 51..221
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="gene K protein"
|
||||
/protein_id="NP_040706.1"
|
||||
/db_xref="GI:9626376"
|
||||
/translation="MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLC
|
||||
DLSPSTNDSVKN"
|
||||
variation 57
|
||||
/note="c in wt; t in am6 [14]"
|
||||
variation 117
|
||||
/note="g in wt; a in am6 [14]"
|
||||
CDS 133..393
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="DNA maturation protein"
|
||||
/protein_id="NP_040707.1"
|
||||
/db_xref="GI:9626377"
|
||||
/translation="MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTF
|
||||
VKDWFRYESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS"
|
||||
mRNA 358..3975
|
||||
/note="mRNA (major alt.)"
|
||||
mRNA 358..991
|
||||
/note="mRNA (minor alt.)"
|
||||
CDS 390..848
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="capsid morphogenesis protein"
|
||||
/protein_id="NP_040708.1"
|
||||
/db_xref="GI:9626378"
|
||||
/translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
|
||||
ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
|
||||
FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
|
||||
CDS 568..843
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="cell lysis protein"
|
||||
/protein_id="NP_040709.1"
|
||||
/db_xref="GI:9626379"
|
||||
/translation="MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALNL
|
||||
RKTLLMASSVRLKPLNCSRLPCVYAQETLTFLLTQKKTCVKNYVRKE"
|
||||
CDS 848..964
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="core protein, DNA condensation protein"
|
||||
/protein_id="NP_040710.1"
|
||||
/db_xref="GI:9626380"
|
||||
/translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
|
||||
CDS 1001..2284
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="major coat protein"
|
||||
/protein_id="NP_040711.1"
|
||||
/db_xref="GI:9626381"
|
||||
/translation="MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEM
|
||||
DAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTG
|
||||
YIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYG
|
||||
FRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHD
|
||||
VISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRF
|
||||
FVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDV
|
||||
FRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYD
|
||||
QCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS"
|
||||
CDS 2395..2922
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="major spike protein"
|
||||
/protein_id="NP_040712.1"
|
||||
/db_xref="GI:9626382"
|
||||
/translation="MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYF
|
||||
DSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTT
|
||||
LPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVS
|
||||
LNQVIKEIICLQPLK"
|
||||
CDS 2931..3917
|
||||
/codon_start=1
|
||||
/transl_table=11
|
||||
/product="minor spike protein, adsorption"
|
||||
/protein_id="NP_040713.1"
|
||||
/db_xref="GI:9626383"
|
||||
/translation="MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNT
|
||||
VGMGDAGIKSAIQGSNVPNPDEAAPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLLDL
|
||||
VGLGGKSAADKGKDTRDYLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLD
|
||||
NQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTN
|
||||
LSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHI
|
||||
GATAKDISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK"
|
||||
misc_feature 3962
|
||||
/note="transcription start site"
|
||||
rep_origin 4306
|
||||
/note="origin of viral strand synthesis"
|
||||
misc_feature 4899
|
||||
/note="transcription start site"
|
||||
BASE COUNT 1291 a 1157 c 1254 g 1684 t
|
||||
ORIGIN
|
||||
1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa
|
||||
61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac
|
||||
121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
|
||||
181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
|
||||
241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
|
||||
301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc tgagtccgat
|
||||
361 gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa tccgtacgtt
|
||||
421 tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg gatttaaccg
|
||||
481 aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac cgctctcgtg
|
||||
541 ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga taccctcgct
|
||||
601 ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat cccgtcaaca
|
||||
661 ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt attaatggcg
|
||||
721 tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta cgcgcaggaa
|
||||
781 acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt gcggaaggag
|
||||
841 tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc cgcagccgtt
|
||||
901 gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg gtcaacaatt
|
||||
961 ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata ttcaaactgg
|
||||
1021 cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc agattggtcg
|
||||
1081 tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga tggacgccgt
|
||||
1141 tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta ctgtagacat
|
||||
1201 ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta agttcatgaa
|
||||
1261 ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata ttgaccatgc
|
||||
1321 cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt tgtttcaggg
|
||||
1381 ttatttgaat atctataaca actattttaa agcgccgtgg atgcctgacc gtaccgaggc
|
||||
1441 taaccctaat gagcttaatc aagatgatgc tcgttatggt ttccgttgct gccatctcaa
|
||||
1501 aaacatttgg actgctccgc ttcctcctga gactgagctt tctcgccaaa tgacgacttc
|
||||
1561 taccacatct attgacatta tgggtctgca agctgcttat gctaatttgc atactgacca
|
||||
1621 agaacgtgat tacttcatgc agcgttacca tgatgttatt tcttcatttg gaggtaaaac
|
||||
1681 ctcttatgac gctgacaacc gtcctttact tgtcatgcgc tctaatctct gggcatctgg
|
||||
1741 ctatgatgtt gatggaactg accaaacgtc gttaggccag ttttctggtc gtgttcaaca
|
||||
1801 gacctataaa cattctgtgc cgcgtttctt tgttcctgag catggcacta tgtttactct
|
||||
1861 tgcgcttgtt cgttttccgc ctactgcgac taaagagatt cagtacctta acgctaaagg
|
||||
1921 tgctttgact tataccgata ttgctggcga ccctgttttg tatggcaact tgccgccgcg
|
||||
1981 tgaaatttct atgaaggatg ttttccgttc tggtgattcg tctaagaagt ttaagattgc
|
||||
2041 tgagggtcag tggtatcgtt atgcgccttc gtatgtttct cctgcttatc accttcttga
|
||||
2101 aggcttccca ttcattcagg aaccgccttc tggtgatttg caagaacgcg tacttattcg
|
||||
2161 ccaccatgat tatgaccagt gtttccagtc cgttcagttg ttgcagtgga atagtcaggt
|
||||
2221 taaatttaat gtgaccgttt atcgcaatct gccgaccact cgcgattcaa tcatgacttc
|
||||
2281 gtgataaaag attgagtgtg aggttataac gccgaagcgg taaaaatttt aatttttgcc
|
||||
2341 gctgaggggt tgaccaagcg aagcgcggta ggttttctgc ttaggagttt aatcatgttt
|
||||
2401 cagactttta tttctcgcca taattcaaac tttttttctg ataagctggt tctcacttct
|
||||
2461 gttactccag cttcttcggc acctgtttta cagacaccta aagctacatc gtcaacgtta
|
||||
2521 tattttgata gtttgacggt taatgctggt aatggtggtt ttcttcattg cattcagatg
|
||||
2581 gatacatctg tcaacgccgc taatcaggtt gtttctgttg gtgctgatat tgcttttgat
|
||||
2641 gccgacccta aattttttgc ctgtttggtt cgctttgagt cttcttcggt tccgactacc
|
||||
2701 ctcccgactg cctatgatgt ttatcctttg aatggtcgcc atgatggtgg ttattatacc
|
||||
2761 gtcaaggact gtgtgactat tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt
|
||||
2821 ggtttcatgg tttggtctaa ctttaccgct actaaatgcc gcggattggt ttcgctgaat
|
||||
2881 caggttatta aagagattat ttgtctccag ccacttaagt gaggtgattt atgtttggtg
|
||||
2941 ctattgctgg cggtattgct tctgctcttg ctggtggcgc catgtctaaa ttgtttggag
|
||||
3001 gcggtcaaaa agccgcctcc ggtggcattc aaggtgatgt gcttgctacc gataacaata
|
||||
3061 ctgtaggcat gggtgatgct ggtattaaat ctgccattca aggctctaat gttcctaacc
|
||||
3121 ctgatgaggc cgcccctagt tttgtttctg gtgctatggc taaagctggt aaaggacttc
|
||||
3181 ttgaaggtac gttgcaggct ggcacttctg ccgtttctga taagttgctt gatttggttg
|
||||
3241 gacttggtgg caagtctgcc gctgataaag gaaaggatac tcgtgattat cttgctgctg
|
||||
3301 catttcctga gcttaatgct tgggagcgtg ctggtgctga tgcttcctct gctggtatgg
|
||||
3361 ttgacgccgg atttgagaat caaaaagagc ttactaaaat gcaactggac aatcagaaag
|
||||
3421 agattgccga gatgcaaaat gagactcaaa aagagattgc tggcattcag tcggcgactt
|
||||
3481 cacgccagaa tacgaaagac caggtatatg cacaaaatga gatgcttgct tatcaacaga
|
||||
3541 aggagtctac tgctcgcgtt gcgtctatta tggaaaacac caatctttcc aagcaacagc
|
||||
3601 aggtttccga gattatgcgc caaatgctta ctcaagctca aacggctggt cagtatttta
|
||||
3661 ccaatgacca aatcaaagaa atgactcgca aggttagtgc tgaggttgac ttagttcatc
|
||||
3721 agcaaacgca gaatcagcgg tatggctctt ctcatattgg cgctactgca aaggatattt
|
||||
3781 ctaatgtcgt cactgatgct gcttctggtg tggttgatat ttttcatggt attgataaag
|
||||
3841 ctgttgccga tacttggaac aatttctgga aagacggtaa agctgatggt attggctcta
|
||||
3901 atttgtctag gaaataaccg tcaggattga caccctccca attgtatgtt ttcatgcctc
|
||||
3961 caaatcttgg aggctttttt atggttcgtt cttattaccc ttctgaatgt cacgctgatt
|
||||
4021 attttgactt tgagcgtatc gaggctctta aacctgctat tgaggcttgt ggcatttcta
|
||||
4081 ctctttctca atccccaatg cttggcttcc ataagcagat ggataaccgc atcaagctct
|
||||
4141 tggaagagat tctgtctttt cgtatgcagg gcgttgagtt cgataatggt gatatgtatg
|
||||
4201 ttgacggcca taaggctgct tctgacgttc gtgatgagtt tgtatctgtt actgagaagt
|
||||
4261 taatggatga attggcacaa tgctacaatg tgctccccca acttgatatt aataacacta
|
||||
4321 tagaccaccg ccccgaaggg gacgaaaaat ggtttttaga gaacgagaag acggttacgc
|
||||
4381 agttttgccg caagctggct gctgaacgcc ctcttaagga tattcgcgat gagtataatt
|
||||
4441 accccaaaaa gaaaggtatt aaggatgagt gttcaagatt gctggaggcc tccactatga
|
||||
4501 aatcgcgtag aggctttgct attcagcgtt tgatgaatgc aatgcgacag gctcatgctg
|
||||
4561 atggttggtt tatcgttttt gacactctca cgttggctga cgaccgatta gaggcgtttt
|
||||
4621 atgataatcc caatgctttg cgtgactatt ttcgtgatat tggtcgtatg gttcttgctg
|
||||
4681 ccgagggtcg caaggctaat gattcacacg ccgactgcta tcagtatttt tgtgtgcctg
|
||||
4741 agtatggtac agctaatggc cgtcttcatt tccatgcggt gcactttatg cggacacttc
|
||||
4801 ctacaggtag cgttgaccct aattttggtc gtcgggtacg caatcgccgc cagttaaata
|
||||
4861 gcttgcaaaa tacgtggcct tatggttaca gtatgcccat cgcagttcgc tacacgcagg
|
||||
4921 acgctttttc acgttctggt tggttgtggc ctgttgatgc taaaggtgag ccgcttaaag
|
||||
4981 ctaccagtta tatggctgtt ggtttctatg tggctaaata cgttaacaaa aagtcagata
|
||||
5041 tggaccttgc tgctaaaggt ctaggagcta aagaatggaa caactcacta aaaaccaagc
|
||||
5101 tgtcgctact tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa
|
||||
5161 tgctcacaat gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg
|
||||
5221 acgcgacgcc gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc
|
||||
5281 tgggaaaagt tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca
|
||||
5341 aatttatgcg cgcttcgata aaaatgattg gcgtatccaa cctgca
|
||||
//
|
||||
133
Tests/GFF/NC_001802.fna
Normal file
133
Tests/GFF/NC_001802.fna
Normal file
@ -0,0 +1,133 @@
|
||||
>gi|9629357|ref|NC_001802.1| Human immunodeficiency virus type 1, complete genome
|
||||
GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCC
|
||||
TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGA
|
||||
TCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAA
|
||||
AGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGG
|
||||
CGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCG
|
||||
TCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAAT
|
||||
ATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGA
|
||||
AACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTT
|
||||
AGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGG
|
||||
AAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACAC
|
||||
AGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAG
|
||||
GCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGA
|
||||
TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGG
|
||||
GGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTG
|
||||
CATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAA
|
||||
CTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTA
|
||||
TAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATA
|
||||
AGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG
|
||||
CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGAC
|
||||
TATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGA
|
||||
CCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGC
|
||||
AGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGC
|
||||
CAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT
|
||||
TGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC
|
||||
TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCC
|
||||
CCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAAC
|
||||
GACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATAC
|
||||
AGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATC
|
||||
AAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAG
|
||||
GACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCAT
|
||||
TAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCA
|
||||
TTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAA
|
||||
AAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAG
|
||||
AAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCA
|
||||
CATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTC
|
||||
CCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGAT
|
||||
TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACA
|
||||
AAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATG
|
||||
TAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTG
|
||||
GGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCAT
|
||||
CCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGA
|
||||
AGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACT
|
||||
CCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAA
|
||||
AACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAA
|
||||
TACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGG
|
||||
AAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATA
|
||||
ACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGG
|
||||
AAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTT
|
||||
AGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCA
|
||||
GCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCC
|
||||
TAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGA
|
||||
AGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCA
|
||||
GAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCAC
|
||||
ACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTT
|
||||
AGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGAT
|
||||
TTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAG
|
||||
CCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGT
|
||||
TATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAG
|
||||
GAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCA
|
||||
GCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCC
|
||||
CTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTA
|
||||
AGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAG
|
||||
GGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGA
|
||||
ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGG
|
||||
AAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAG
|
||||
TAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGC
|
||||
AAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGC
|
||||
TAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCA
|
||||
CTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGG
|
||||
GTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCA
|
||||
ACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATA
|
||||
GTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG
|
||||
CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAA
|
||||
CAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGC
|
||||
TTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAAC
|
||||
TTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTT
|
||||
CAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGA
|
||||
TCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA
|
||||
AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGC
|
||||
GGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGT
|
||||
ACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
|
||||
GTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATA
|
||||
GACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGG
|
||||
GGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC
|
||||
AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCA
|
||||
TATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAG
|
||||
TAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGA
|
||||
TATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAG
|
||||
TGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGA
|
||||
TAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA
|
||||
TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTC
|
||||
ATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTG
|
||||
CGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATG
|
||||
TACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTA
|
||||
GTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAA
|
||||
TTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT
|
||||
TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAAC
|
||||
ACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAAT
|
||||
CCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTC
|
||||
AACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGA
|
||||
AGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAA
|
||||
TGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA
|
||||
TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGA
|
||||
AGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAA
|
||||
GAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGG
|
||||
AAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAG
|
||||
CAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCA
|
||||
AGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG
|
||||
TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAA
|
||||
CAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACT
|
||||
CCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGC
|
||||
AAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGA
|
||||
GGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCAC
|
||||
CATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG
|
||||
TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTG
|
||||
CGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAAC
|
||||
TTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACT
|
||||
AAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATA
|
||||
GAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGA
|
||||
TTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA
|
||||
TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAAT
|
||||
CACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTG
|
||||
GGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACT
|
||||
TTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTG
|
||||
GATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCA
|
||||
CTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG
|
||||
AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTG
|
||||
GAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGC
|
||||
TGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTG
|
||||
GGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAG
|
||||
ACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCC
|
||||
TTGAGTGCTTC
|
||||
133
Tests/GFF/NC_001802lc.fna
Normal file
133
Tests/GFF/NC_001802lc.fna
Normal file
@ -0,0 +1,133 @@
|
||||
>gi|9629357|ref|nc_001802.1| human immunodeficiency virus type 1, complete genome
|
||||
ggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaacccactgcttaagcc
|
||||
tcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttgtgtgactctggtaactagaga
|
||||
tccctcagacccttttagtcagtgtggaaaatctctagcagtggcgcccgaacagggacctgaaagcgaa
|
||||
agggaaaccagaggagctctctcgacgcaggactcggcttgctgaagcgcgcacggcaagaggcgagggg
|
||||
cggcgactggtgagtacgccaaaaattttgactagcggaggctagaaggagagagatgggtgcgagagcg
|
||||
tcagtattaagcgggggagaattagatcgatgggaaaaaattcggttaaggccagggggaaagaaaaaat
|
||||
ataaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttaga
|
||||
aacatcagaaggctgtagacaaatactgggacagctacaaccatcccttcagacaggatcagaagaactt
|
||||
agatcattatataatacagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaagg
|
||||
aagctttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcagcagctgacac
|
||||
aggacacagcaatcaggtcagccaaaattaccctatagtgcagaacatccaggggcaaatggtacatcag
|
||||
gccatatcacctagaactttaaatgcatgggtaaaagtagtagaagagaaggctttcagcccagaagtga
|
||||
tacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggg
|
||||
gggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagagtg
|
||||
catccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaa
|
||||
ctactagtacccttcaggaacaaataggatggatgacaaataatccacctatcccagtaggagaaattta
|
||||
taaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacata
|
||||
agacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaag
|
||||
cttcacaggaggtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaagac
|
||||
tattttaaaagcattgggaccagcggctacactagaagaaatgatgacagcatgtcagggagtaggagga
|
||||
cccggccataaggcaagagttttggctgaagcaatgagccaagtaacaaattcagctaccataatgatgc
|
||||
agagaggcaattttaggaaccaaagaaagattgttaagtgtttcaattgtggcaaagaagggcacacagc
|
||||
cagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagat
|
||||
tgtactgagagacaggctaattttttagggaagatctggccttcctacaagggaaggccagggaattttc
|
||||
ttcagagcagaccagagccaacagccccaccagaagagagcttcaggtctggggtagagacaacaactcc
|
||||
ccctcagaagcaggagccgatagacaaggaactgtatcctttaacttccctcaggtcactctttggcaac
|
||||
gacccctcgtcacaataaagataggggggcaactaaaggaagctctattagatacaggagcagatgatac
|
||||
agtattagaagaaatgagtttgccaggaagatggaaaccaaaaatgatagggggaattggaggttttatc
|
||||
aaagtaagacagtatgatcagatactcatagaaatctgtggacataaagctataggtacagtattagtag
|
||||
gacctacacctgtcaacataattggaagaaatctgttgactcagattggttgcactttaaattttcccat
|
||||
tagccctattgagactgtaccagtaaaattaaagccaggaatggatggcccaaaagttaaacaatggcca
|
||||
ttgacagaagaaaaaataaaagcattagtagaaatttgtacagagatggaaaaggaagggaaaatttcaa
|
||||
aaattgggcctgaaaatccatacaatactccagtatttgccataaagaaaaaagacagtactaaatggag
|
||||
aaaattagtagatttcagagaacttaataagagaactcaagacttctgggaagttcaattaggaatacca
|
||||
catcccgcagggttaaaaaagaaaaaatcagtaacagtactggatgtgggtgatgcatatttttcagttc
|
||||
ccttagatgaagacttcaggaagtatactgcatttaccatacctagtataaacaatgagacaccagggat
|
||||
tagatatcagtacaatgtgcttccacagggatggaaaggatcaccagcaatattccaaagtagcatgaca
|
||||
aaaatcttagagccttttagaaaacaaaatccagacatagttatctatcaatacatggatgatttgtatg
|
||||
taggatctgacttagaaatagggcagcatagaacaaaaatagaggagctgagacaacatctgttgaggtg
|
||||
gggacttaccacaccagacaaaaaacatcagaaagaacctccattcctttggatgggttatgaactccat
|
||||
cctgataaatggacagtacagcctatagtgctgccagaaaaagacagctggactgtcaatgacatacaga
|
||||
agttagtggggaaattgaattgggcaagtcagatttacccagggattaaagtaaggcaattatgtaaact
|
||||
ccttagaggaaccaaagcactaacagaagtaataccactaacagaagaagcagagctagaactggcagaa
|
||||
aacagagagattctaaaagaaccagtacatggagtgtattatgacccatcaaaagacttaatagcagaaa
|
||||
tacagaagcaggggcaaggccaatggacatatcaaatttatcaagagccatttaaaaatctgaaaacagg
|
||||
aaaatatgcaagaatgaggggtgcccacactaatgatgtaaaacaattaacagaggcagtgcaaaaaata
|
||||
accacagaaagcatagtaatatggggaaagactcctaaatttaaactgcccatacaaaaggaaacatggg
|
||||
aaacatggtggacagagtattggcaagccacctggattcctgagtgggagtttgttaatacccctccctt
|
||||
agtgaaattatggtaccagttagagaaagaacccatagtaggagcagaaaccttctatgtagatggggca
|
||||
gctaacagggagactaaattaggaaaagcaggatatgttactaatagaggaagacaaaaagttgtcaccc
|
||||
taactgacacaacaaatcagaagactgagttacaagcaatttatctagctttgcaggattcgggattaga
|
||||
agtaaacatagtaacagactcacaatatgcattaggaatcattcaagcacaaccagatcaaagtgaatca
|
||||
gagttagtcaatcaaataatagagcagttaataaaaaaggaaaaggtctatctggcatgggtaccagcac
|
||||
acaaaggaattggaggaaatgaacaagtagataaattagtcagtgctggaatcaggaaagtactattttt
|
||||
agatggaatagataaggcccaagatgaacatgagaaatatcacagtaattggagagcaatggctagtgat
|
||||
tttaacctgccacctgtagtagcaaaagaaatagtagccagctgtgataaatgtcagctaaaaggagaag
|
||||
ccatgcatggacaagtagactgtagtccaggaatatggcaactagattgtacacatttagaaggaaaagt
|
||||
tatcctggtagcagttcatgtagccagtggatatatagaagcagaagttattccagcagaaacagggcag
|
||||
gaaacagcatattttcttttaaaattagcaggaagatggccagtaaaaacaatacatactgacaatggca
|
||||
gcaatttcaccggtgctacggttagggccgcctgttggtgggcgggaatcaagcaggaatttggaattcc
|
||||
ctacaatccccaaagtcaaggagtagtagaatctatgaataaagaattaaagaaaattataggacaggta
|
||||
agagatcaggctgaacatcttaagacagcagtacaaatggcagtattcatccacaattttaaaagaaaag
|
||||
gggggattggggggtacagtgcaggggaaagaatagtagacataatagcaacagacatacaaactaaaga
|
||||
attacaaaaacaaattacaaaaattcaaaattttcgggtttattacagggacagcagaaatccactttgg
|
||||
aaaggaccagcaaagctcctctggaaaggtgaaggggcagtagtaatacaagataatagtgacataaaag
|
||||
tagtgccaagaagaaaagcaaagatcattagggattatggaaaacagatggcaggtgatgattgtgtggc
|
||||
aagtagacaggatgaggattagaacatggaaaagtttagtaaaacaccatatgtatgtttcagggaaagc
|
||||
taggggatggttttatagacatcactatgaaagccctcatccaagaataagttcagaagtacacatccca
|
||||
ctaggggatgctagattggtaataacaacatattggggtctgcatacaggagaaagagactggcatttgg
|
||||
gtcagggagtctccatagaatggaggaaaaagagatatagcacacaagtagaccctgaactagcagacca
|
||||
actaattcatctgtattactttgactgtttttcagactctgctataagaaaggccttattaggacacata
|
||||
gttagccctaggtgtgaatatcaagcaggacataacaaggtaggatctctacaatacttggcactagcag
|
||||
cattaataacaccaaaaaagataaagccacctttgcctagtgttacgaaactgacagaggatagatggaa
|
||||
caagccccagaagaccaagggccacagagggagccacacaatgaatggacactagagcttttagaggagc
|
||||
ttaagaatgaagctgttagacattttcctaggatttggctccatggcttagggcaacatatctatgaaac
|
||||
ttatggggatacttgggcaggagtggaagccataataagaattctgcaacaactgctgtttatccatttt
|
||||
cagaattgggtgtcgacatagcagaataggcgttactcgacagaggagagcaagaaatggagccagtaga
|
||||
tcctagactagagccctggaagcatccaggaagtcagcctaaaactgcttgtaccaattgctattgtaaa
|
||||
aagtgttgctttcattgccaagtttgtttcataacaaaagccttaggcatctcctatggcaggaagaagc
|
||||
ggagacagcgacgaagagctcatcagaacagtcagactcatcaagcttctctatcaaagcagtaagtagt
|
||||
acatgtaatgcaacctataccaatagtagcaatagtagcattagtagtagcaataataatagcaatagtt
|
||||
gtgtggtccatagtaatcatagaatataggaaaatattaagacaaagaaaaatagacaggttaattgata
|
||||
gactaatagaaagagcagaagacagtggcaatgagagtgaaggagaaatatcagcacttgtggagatggg
|
||||
ggtggagatggggcaccatgctccttgggatgttgatgatctgtagtgctacagaaaaattgtgggtcac
|
||||
agtctattatggggtacctgtgtggaaggaagcaaccaccactctattttgtgcatcagatgctaaagca
|
||||
tatgatacagaggtacataatgtttgggccacacatgcctgtgtacccacagaccccaacccacaagaag
|
||||
tagtattggtaaatgtgacagaaaattttaacatgtggaaaaatgacatggtagaacagatgcatgagga
|
||||
tataatcagtttatgggatcaaagcctaaagccatgtgtaaaattaaccccactctgtgttagtttaaag
|
||||
tgcactgatttgaagaatgatactaataccaatagtagtagcgggagaatgataatggagaaaggagaga
|
||||
taaaaaactgctctttcaatatcagcacaagcataagaggtaaggtgcagaaagaatatgcattttttta
|
||||
taaacttgatataataccaatagataatgatactaccagctataagttgacaagttgtaacacctcagtc
|
||||
attacacaggcctgtccaaaggtatcctttgagccaattcccatacattattgtgccccggctggttttg
|
||||
cgattctaaaatgtaataataagacgttcaatggaacaggaccatgtacaaatgtcagcacagtacaatg
|
||||
tacacatggaattaggccagtagtatcaactcaactgctgttaaatggcagtctagcagaagaagaggta
|
||||
gtaattagatctgtcaatttcacggacaatgctaaaaccataatagtacagctgaacacatctgtagaaa
|
||||
ttaattgtacaagacccaacaacaatacaagaaaaagaatccgtatccagagaggaccagggagagcatt
|
||||
tgttacaataggaaaaataggaaatatgagacaagcacattgtaacattagtagagcaaaatggaataac
|
||||
actttaaaacagatagctagcaaattaagagaacaatttggaaataataaaacaataatctttaagcaat
|
||||
cctcaggaggggacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattc
|
||||
aacacaactgtttaatagtacttggtttaatagtacttggagtactgaagggtcaaataacactgaagga
|
||||
agtgacacaatcaccctcccatgcagaataaaacaaattataaacatgtggcagaaagtaggaaaagcaa
|
||||
tgtatgcccctcccatcagtggacaaattagatgttcatcaaatattacagggctgctattaacaagaga
|
||||
tggtggtaatagcaacaatgagtccgagatcttcagacctggaggaggagatatgagggacaattggaga
|
||||
agtgaattatataaatataaagtagtaaaaattgaaccattaggagtagcacccaccaaggcaaagagaa
|
||||
gagtggtgcagagagaaaaaagagcagtgggaataggagctttgttccttgggttcttgggagcagcagg
|
||||
aagcactatgggcgcagcctcaatgacgctgacggtacaggccagacaattattgtctggtatagtgcag
|
||||
cagcagaacaatttgctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatca
|
||||
agcagctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctggggatttgggg
|
||||
ttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttggagtaataaatctctggaa
|
||||
cagatttggaatcacacgacctggatggagtgggacagagaaattaacaattacacaagcttaatacact
|
||||
ccttaattgaagaatcgcaaaaccagcaagaaaagaatgaacaagaattattggaattagataaatgggc
|
||||
aagtttgtggaattggtttaacataacaaattggctgtggtatataaaattattcataatgatagtagga
|
||||
ggcttggtaggtttaagaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcac
|
||||
cattatcgtttcagacccacctcccaaccccgaggggacccgacaggcccgaaggaatagaagaagaagg
|
||||
tggagagagagacagagacagatccattcgattagtgaacggatccttggcacttatctgggacgatctg
|
||||
cggagcctgtgcctcttcagctaccaccgcttgagagacttactcttgattgtaacgaggattgtggaac
|
||||
ttctgggacgcagggggtgggaagccctcaaatattggtggaatctcctacagtattggagtcaggaact
|
||||
aaagaatagtgctgttagcttgctcaatgccacagccatagcagtagctgaggggacagatagggttata
|
||||
gaagtagtacaaggagcttgtagagctattcgccacatacctagaagaataagacagggcttggaaagga
|
||||
ttttgctataagatgggtggcaagtggtcaaaaagtagtgtgattggatggcctactgtaagggaaagaa
|
||||
tgagacgagctgagccagcagcagatagggtgggagcagcatctcgagacctggaaaaacatggagcaat
|
||||
cacaagtagcaatacagcagctaccaatgctgcttgtgcctggctagaagcacaagaggaggaggaggtg
|
||||
ggttttccagtcacacctcaggtacctttaagaccaatgacttacaaggcagctgtagatcttagccact
|
||||
ttttaaaagaaaaggggggactggaagggctaattcactcccaaagaagacaagatatccttgatctgtg
|
||||
gatctaccacacacaaggctacttccctgattagcagaactacacaccagggccaggggtcagatatcca
|
||||
ctgacctttggatggtgctacaagctagtaccagttgagccagataagatagaagaggccaataaaggag
|
||||
agaacaccagcttgttacaccctgtgagcctgcatgggatggatgacccggagagagaagtgttagagtg
|
||||
gaggtttgacagccgcctagcatttcatcacgtggcccgagagctgcatccggagtacttcaagaactgc
|
||||
tgacatcgagcttgctacaagggactttccgctggggactttccagggaggcgtggcctgggcgggactg
|
||||
gggagtggcgagccctcagatcctgcatataagcagctgctttttgcctgtactgggtctctctggttag
|
||||
accagatctgagcctgggagctctctggctaactagggaacccactgcttaagcctcaataaagcttgcc
|
||||
ttgagtgcttc
|
||||
133
Tests/GFF/NC_001802x.fna
Normal file
133
Tests/GFF/NC_001802x.fna
Normal file
@ -0,0 +1,133 @@
|
||||
>gi|9629357|ref|NC_001802.1| Human immunodeficiency virus type 1, complete genome
|
||||
GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCC
|
||||
TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGA
|
||||
TCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAA
|
||||
AGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGG
|
||||
CGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCG
|
||||
TCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAAT
|
||||
ATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGA
|
||||
AACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTT
|
||||
AGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGG
|
||||
AAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACAC
|
||||
AGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAG
|
||||
GCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGA
|
||||
TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGG
|
||||
GGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTG
|
||||
CATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAA
|
||||
CTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTA
|
||||
TAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATA
|
||||
AGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG
|
||||
CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGAC
|
||||
TATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGA
|
||||
CCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGC
|
||||
AGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGC
|
||||
CAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT
|
||||
TGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC
|
||||
TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCC
|
||||
CCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAAC
|
||||
GACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATAC
|
||||
AGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATC
|
||||
AAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAG
|
||||
GACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCAT
|
||||
TAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCA
|
||||
TTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAA
|
||||
AAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAG
|
||||
AAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCA
|
||||
CATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTC
|
||||
CCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGAT
|
||||
TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACA
|
||||
AAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATG
|
||||
TAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTG
|
||||
GGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCAT
|
||||
CCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGA
|
||||
AGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACT
|
||||
CCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAA
|
||||
AACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAA
|
||||
TACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGG
|
||||
AAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATA
|
||||
ACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGG
|
||||
AAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTT
|
||||
AGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCA
|
||||
GCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCC
|
||||
TAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGA
|
||||
AGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCA
|
||||
GAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCAC
|
||||
ACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTT
|
||||
AGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGAT
|
||||
TTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAG
|
||||
CCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGT
|
||||
TATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAG
|
||||
GAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCA
|
||||
GCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCC
|
||||
CTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTA
|
||||
AGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAG
|
||||
GGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGA
|
||||
ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGG
|
||||
AAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAG
|
||||
TAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGC
|
||||
AAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGC
|
||||
TAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCA
|
||||
CTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGG
|
||||
GTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCA
|
||||
ACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATA
|
||||
GTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG
|
||||
CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAA
|
||||
CAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGC
|
||||
TTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAAC
|
||||
TTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTT
|
||||
CAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGA
|
||||
TCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA
|
||||
AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGC
|
||||
GGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGT
|
||||
ACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
|
||||
GTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATA
|
||||
GACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGG
|
||||
GGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC
|
||||
AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCA
|
||||
TATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAG
|
||||
TAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGA
|
||||
TATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAG
|
||||
TGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGA
|
||||
TAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA
|
||||
TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTC
|
||||
ATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTG
|
||||
CGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATG
|
||||
TACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTA
|
||||
GTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAA
|
||||
TTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT
|
||||
TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAAC
|
||||
ACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAAT
|
||||
CCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTC
|
||||
AACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGA
|
||||
AGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAA
|
||||
TGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA
|
||||
TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGA
|
||||
AGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAA
|
||||
GAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGG
|
||||
AAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAG
|
||||
CAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCA
|
||||
AGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG
|
||||
TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAA
|
||||
CAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACT
|
||||
CCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGC
|
||||
AAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGA
|
||||
GGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCAC
|
||||
CATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG
|
||||
TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTG
|
||||
CGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAAC
|
||||
TTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACT
|
||||
AAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATA
|
||||
GAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGA
|
||||
TTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA
|
||||
TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAAT
|
||||
CACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTG
|
||||
GGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACT
|
||||
TTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTG
|
||||
GATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCA
|
||||
CTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG
|
||||
AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTG
|
||||
GAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGC
|
||||
TGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTG
|
||||
GGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAG
|
||||
ACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCC
|
||||
TTGAGTGCTTC
|
||||
6
Tests/GFF/multi.fna
Normal file
6
Tests/GFF/multi.fna
Normal file
@ -0,0 +1,6 @@
|
||||
>test1 description
|
||||
ACGTCGCG
|
||||
>test2 description
|
||||
GGGGCCCC
|
||||
>test3 description
|
||||
AAACACAC
|
||||
Reference in New Issue
Block a user