Enhanced spacing

This commit is contained in:
Samuel Prince
2024-09-20 07:43:32 -04:00
committed by Wibowo Arindrarto
parent 42ed0d1a4e
commit 2eaeb318fc

View File

@ -8,19 +8,16 @@
"""Tests for SearchIO InfernalIO infernal-tab parser."""
import os
import unittest
import itertools
from Bio.SearchIO import parse
# test case files are in the Blast directory
TEST_DIR = "Infernal"
FMT = "infernal-tab"
def get_file(filename):
"""Return the path of a test file."""
return os.path.join(TEST_DIR, filename)
@ -34,7 +31,6 @@ def next_result(qresults, counter):
class CmscanCases(unittest.TestCase):
"""Test parsing cmscan output."""
def test_cmscan_mq_mm(self):
"""Test parsing infernal-tab, cmscan, multiple queries, multiple match, one hsp, default format (IRES_5S_U2_Yeast)"""
tab_file = get_file("cmscan_115_IRES_5S_U2_Yeast.tbl")
@ -246,8 +242,7 @@ class CmscanCases(unittest.TestCase):
class CmsearchCases(unittest.TestCase):
"""Test parsing cmsearch output."""
def test_1q_0m(self):
"""Test parsing infernal-tab, cmsearch, single query, no hits (IRES_Yeast)"""
tab_file = get_file("cmsearch_114_IRES_Yeast.tbl")