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katel
2002-05-14 07:06:44 +00:00
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BOVINE ...................................MSELDQLRQEAEQLKNQIRDARKAC
HUMAN ...................................MSELDQLRQEAEQLKNQIRDARKAC
FILONEOFORMANS ....MQD...........................IQDKIAAARREADGLKDKLRAARDQT
MOUSE MATDGLH...........................ENETLASLKSEAESLKGKLEEERAKL
YEAST MAAHQMDSITYSNNVTQQYIQPQSLQDISAVEDEIQNKIEAARQESKQLHAQINKAKHKI
ORENI .MTEQMT...........................VRGTLKGHSGWVTQIATTPKYPDMIL
#
BOVINE ADATLSQITNNIDPVGR..IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
HUMAN ADATLSQITNNIDPVGR..IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
FILONEOFORMANS ADTSLRAMATDTPPLPR..ITLKARRTLKGHLAKIYALHWAADTRHIVSASQDGKLIVWD
MOUSE HDVELHQVAERVEALGQ..FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD
YEAST QDASLFQMANKVTSLTKNKINLKPNIVLKGHNNKISDFRWSRDSKRILSASQDGFMLIWD
ORENI SASRDKSIIMWKLTRDET.NYGIPQRSLKGHSHFVSDVVISSDG.FALSGAWDGTLRLWD
#
BOVINE SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR........EGNVRV
HUMAN SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR........EGNVRV
FILONEOFORMANS AYTTNKVHAIPLRSSWVMTAAYAPSGNLVACGGLDNVCSIYSLRGAGPGAPGAPGGQVKV
MOUSE SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD......KNENMAAK
YEAST SASGLKQNAIPLDSQWVLSCAISPSSTLVASAGLNNNCTIYRVSKE.......NRVAQNV
ORENI LTTGLTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNT...........LGVCKY
#
BOVINE SRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
HUMAN SRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
FILONEOFORMANS ARELSAHSGYLSCCRFIN.DRQIVTSSG.DMTCMLWDIEQGTRTMEFNDHTGDVMCISLA
MOUSE KKSVAMHTNYLSACSFTNSDMQILTASG.DGTCALWDVESGQLLQSFHGHGADVLCLDLA
YEAST ASIFKGHTCYISDIEFTD.NAHILTASG.DMTCALWDIPKAKRVREYSDHLGDVLALAIP
ORENI TIQDEGHTEWVSCVRFSNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVS
#
BOVINE ..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD
HUMAN ..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD
FILONEOFORMANS ..P....NANLFVSGACDATAKVWDIRTGKAVQTFTGHESDINAVQFFPNGDAFATGSDD
MOUSE ..PSE..TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD
YEAST EEPNSENSSNTFASCGSDGYTYIWDSRSPSAVQSFYVNDSDINALRFFKDGMSIVAGSDN
ORENI ..P....DGSLCASGGKDGQAMLWDLNEGKHLYTLDSGD.VINALCFSPNRYWLCAATG.
#
BOVINE ATCRLFDLRADQELMTYS.....HD..........NIIC....................G
HUMAN ATCRLFDLRADQELMTYS.....HD..........NIIC....................G
FILONEOFORMANS ASCKLFDLRADRELNSYA.....HD..........NILC....................G
MOUSE ATCRLYDLRADREVAIYS.....KE..........SIIF....................G
YEAST GAINMYDLRSDCSIATFSLFRGYEERTPTPTYMAANMEYNTAQSPQTLKSTSSSYLDNQG
ORENI PSIKIWDLEGKIIVDELR.....QEVIS......TNSKAEP.................PQ
#
BOVINE ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDG.MAVATGSW
HUMAN ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW
FILONEOFORMANS ITSVAFSISGRVLFAGYDDYNCNVWDTLKGERIGVLAGHENRVSCMGVSGDGVALCTGSW
MOUSE ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW
YEAST VVSLDFSASGRLMYSCYTDIGCVVWDVLKGEIVGKLEGHGGRVTGVRSSPDGLAVCTGSW
ORENI CTSLAWSADGQTLFAGYTDN.LIVWQVTIGTR............................
#
BOVINE DSFLKIWN....
HUMAN DSFLKIWN....
FILONEOFORMANS DSLLKVWS....
MOUSE DHTLRVWA....
YEAST DSTMKIWSPGYQ
ORENI ............
#

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test_saf
Testing Bio.Saf on saf1.txt
BOVINE
...................................MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGR..I
QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI
YNLKTR........EGNVRVSRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS..
...HD..........NIIC....................GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD
NRVSCLGVTDG.MAVATGSWDSFLKIWN....
HUMAN
...................................MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGR..I
QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI
YNLKTR........EGNVRVSRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS..
...HD..........NIIC....................GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD
NRVSCLGVTDDGMAVATGSWDSFLKIWN....
FILONEOFORMANS
....MQD...........................IQDKIAAARREADGLKDKLRAARDQTADTSLRAMATDTPPLPR..I
TLKARRTLKGHLAKIYALHWAADTRHIVSASQDGKLIVWDAYTTNKVHAIPLRSSWVMTAAYAPSGNLVACGGLDNVCSI
YSLRGAGPGAPGAPGGQVKVARELSAHSGYLSCCRFIN.DRQIVTSSG.DMTCMLWDIEQGTRTMEFNDHTGDVMCISLA
..P....NANLFVSGACDATAKVWDIRTGKAVQTFTGHESDINAVQFFPNGDAFATGSDDASCKLFDLRADRELNSYA..
...HD..........NILC....................GITSVAFSISGRVLFAGYDDYNCNVWDTLKGERIGVLAGHE
NRVSCMGVSGDGVALCTGSWDSLLKVWS....
MOUSE
MATDGLH...........................ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQ..F
VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV
YPLTFD......KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG.DGTCALWDVESGQLLQSFHGHGADVLCLDLA
..PSE..TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS..
...KE..........SIIF....................GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE
NRVSTLRVSPDGTAFCSGSWDHTLRVWA....
YEAST
MAAHQMDSITYSNNVTQQYIQPQSLQDISAVEDEIQNKIEAARQESKQLHAQINKAKHKIQDASLFQMANKVTSLTKNKI
NLKPNIVLKGHNNKISDFRWSRDSKRILSASQDGFMLIWDSASGLKQNAIPLDSQWVLSCAISPSSTLVASAGLNNNCTI
YRVSKE.......NRVAQNVASIFKGHTCYISDIEFTD.NAHILTASG.DMTCALWDIPKAKRVREYSDHLGDVLALAIP
EEPNSENSSNTFASCGSDGYTYIWDSRSPSAVQSFYVNDSDINALRFFKDGMSIVAGSDNGAINMYDLRSDCSIATFSLF
RGYEERTPTPTYMAANMEYNTAQSPQTLKSTSSSYLDNQGVVSLDFSASGRLMYSCYTDIGCVVWDVLKGEIVGKLEGHG
GRVTGVRSSPDGLAVCTGSWDSTMKIWSPGYQ
ORENI
.MTEQMT...........................VRGTLKGHSGWVTQIATTPKYPDMILSASRDKSIIMWKLTRDET.N
YGIPQRSLKGHSHFVSDVVISSDG.FALSGAWDGTLRLWDLTTGLTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKL
WNT...........LGVCKYTIQDEGHTEWVSCVRFSNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVS
..P....DGSLCASGGKDGQAMLWDLNEGKHLYTLDSGD.VINALCFSPNRYWLCAATG.PSIKIWDLEGKIIVDELR..
...QEVIS......TNSKAEP.................PQCTSLAWSADGQTLFAGYTDN.LIVWQVTIGTR........
................................