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https://github.com/biopython/biopython.git
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Fixed issues in text format testing
This commit is contained in:
Samuel Prince
committed by
Wibowo Arindrarto
Wibowo Arindrarto
parent
71f13fc2b7
commit
164fdf0163
@ -52,7 +52,6 @@ class CmscanCases(unittest.TestCase):
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self.assertEqual(hit.id, "U2")
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self.assertEqual(hit.description, "U2 spliceosomal RNA")
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self.assertEqual(hit.query_id, "ENA|BK006935|BK006935.2")
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self.assertEqual(hit.bias, 0.0)
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hsp = hit[0]
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self.assertEqual(2, len(hsp))
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self.assertEqual(hsp.model, "cm")
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@ -51,14 +51,14 @@ Hit alignments:
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v NC
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::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________>>>>>>,<<<<<<<___>>> CS
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U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCUUauCAGUuUAAuAuCUGauAuggcccccAuuggg 80
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U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCUUauCAGUuUAAuAuCUGauAuggcccccAuuggg 80
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AU+ UCU+:GCCUUUUGGC:+AGAUCAAGUGUAGUAUCUGUUCUU:UCAGU+UAA+A+CUGA:AUG: CC:CA+UG:G
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ENA|BK006936|BK006936.2 681858 AUC---UCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGA-CCUCAAUGAG 681783
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***...************************************************************999.********** PP
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v NC
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>>>>,,,.,,,,,,,,,,,,,,,,,,,,,,,,,~~~~~~~~~~~~::::::: CS
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U2 81 ggccaau.uauaUUAaauuaAUUUUUggaacua*[34]**[40]*Acccuuu 193
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U2 81 ggccaau.uauaUUAaauuaAUUUUUggaacua*[34]**[40]*Acccuuu 193
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G+:CA+U U+UUAA+UU AC +UUU
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ENA|BK006936|BK006936.2 681782 GCUCAUUaCCUUUUAAUUUG-------------*[ 6]**[ 3]*ACAUUUU 681747
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******86555555555443................7.....9..******* PP
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@ -163,7 +163,7 @@ Hit scores:
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(5) ! 4.4e-17 83.2 0.0 ENA|BK006945|BK006945.2 482045 482165 + cm no 0.53 TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
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(6) ! 4.4e-17 83.2 0.0 ENA|BK006945|BK006945.2 485697 485817 + cm no 0.53 TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
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------ inclusion threshold ------
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(7) ? 0.56 20.9 0.0 ENA|BK006943|BK006943.2 357031 357144 + cm no 0.46 TPA_inf: Saccharomyces cerevisiae S288C chromosome X,
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(7) ? 0.56 20.9 0.0 ENA|BK006943|BK006943.2 357031 357144 + cm no 0.46 TPA_inf: Saccharomyces cerevisiae S288C chromosome X,
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(8) ? 6.6 16.7 0.3 ENA|BK006947|BK006947.3 7085 6968 - cm no 0.41 TPA_inf: Saccharomyces cerevisiae S288C chromosome XIV
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@ -175,14 +175,14 @@ Hit alignments:
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v NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>.>-->>---->>>>>-->><<<-<<---.-<-< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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G::UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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G::UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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ENA|BK006945|BK006945.2 459676 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACuGUAGUUAAGCUGGUAAGAGCCUGACCGaGUAG 459755
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***********************************************99***********************8756**** PP
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v vv NC
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<-----<<____>>----->>->-->>->>>))))))))): CS
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA::C+
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ENA|BK006945|BK006945.2 459756 UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU 459796
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***********************9***************** PP
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@ -194,14 +194,14 @@ Hit alignments:
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v NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>.>-->>---->>>>>-->><<<-<<---.-<-< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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G::UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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G::UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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ENA|BK006945|BK006945.2 489349 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACuGUAGUUAAGCUGGUAAGAGCCUGACCGaGUAG 489428
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***********************************************99***********************8756**** PP
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v vv NC
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<-----<<____>>----->>->-->>->>>))))))))): CS
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA::C+
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ENA|BK006945|BK006945.2 489429 UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU 489469
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***********************9***************** PP
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@ -213,15 +213,15 @@ Hit alignments:
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v NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>.>-->>---->>>>>-->><<<-<<---.-<-< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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ENA|BK006945|BK006945.2 468813 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACuGUAGUUAAGCUGGUAAGAGCCUGACCGaGUAG 468892
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***********************************************99***********************8756**** PP
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v vv NC
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<-----<<____>>----->>->-->>->>>))))))))): CS
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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ENA|BK006945|BK006945.2 468893 UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAGUUG 468933
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***********************9***************** PP
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@ -232,15 +232,15 @@ Hit alignments:
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v NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>.>-->>---->>>>>-->><<<-<<---.-<-< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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ENA|BK006945|BK006945.2 472465 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACuGUAGUUAAGCUGGUAAGAGCCUGACCGaGUAG 472544
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***********************************************99***********************8756**** PP
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v vv NC
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<-----<<____>>----->>->-->>->>>))))))))): CS
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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ENA|BK006945|BK006945.2 472545 UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAGUUG 472585
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***********************9***************** PP
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@ -251,15 +251,15 @@ Hit alignments:
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v NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>.>-->>---->>>>>-->><<<-<<---.-<-< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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ENA|BK006945|BK006945.2 482045 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACuGUAGUUAAGCUGGUAAGAGCCUGACCGaGUAG 482124
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***********************************************99***********************8756**** PP
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v vv NC
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<-----<<____>>----->>->-->>->>>))))))))): CS
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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ENA|BK006945|BK006945.2 482125 UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAGUUG 482165
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***********************9***************** PP
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@ -270,15 +270,15 @@ Hit alignments:
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v NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>.>-->>---->>>>>-->><<<-<<---.-<-< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCc.gAAguUAAGcgcgcUugggCcagggUA.GUAc 78
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: UGC:GCCAUA:C :C::GAAAGCACCG :UCCC+UCCGA C: C G AGUUAAGC::G: +G:GCC G: GUA
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ENA|BK006945|BK006945.2 485697 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACuGUAGUUAAGCUGGUAAGAGCCUGACCGaGUAG 485776
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***********************************************99***********************8756**** PP
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v vv NC
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<-----<<____>>----->>->-->>->>>))))))))): CS
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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5S_rRNA 79 uagGaUGgGuGAcCuCcUGggAAgaccagGugccgCaggcc 119
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+ +UGGGUGACC+ G AA :CAGGUGC:GCA :
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ENA|BK006945|BK006945.2 485777 UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAGUUG 485817
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***********************9***************** PP
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@ -289,14 +289,14 @@ Hit alignments:
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v vv v vv vv v vv vv NC
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(((((((((,,,,<<-<<<<<---<<--<<<<<<______>>-->>>>-.->>---->>>>>-->><<<-<<----<-<< CS
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCcgA.AguUAAGcgcgcUugggCcagggUAGUAcu 79
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5S_rRNA 1 gccuGcggcCAUAccagcgcgaAagcACcgGauCCCAUCcGaACuCcgA.AguUAAGcgcgcUugggCcagggUAGUAcu 79
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::: GC:G CA A:: G :G+AA: AC:: ++ CAU C ::A A :UAAGC: CU+:: C G:G GUACU
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ENA|BK006943|BK006943.2 357031 CAGGGCUGGCAGAGGUGUCGGGAAAAACAAGGAU-CAUAU--CCUUUUAcAAUUAAGCCAUCUACCACCUGAG--GUACU 357105
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****************************888743.44433..555555579**********************..***** PP
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v v vvv NC
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-----<<____>>----->>->-->>->>>)))))).))): CS
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5S_rRNA 80 agGaUGgGuGAcCuCcUGggAAgaccagGugccgCa.ggcc 119
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5S_rRNA 80 agGaUGgGuGAcCuCcUGggAAgaccagGugccgCa.ggcc 119
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A + G CU C GGGAA+A:C+G C:GC :::+
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ENA|BK006943|BK006943.2 357106 AAAG-G-AAAGGCUACCGGGAAUAUCUGAAACAGCUgCUGU 357144
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9994.3.33334778889****************9879*** PP
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@ -308,14 +308,14 @@ Hit alignments:
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v v v v v v v NC
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(((((((((,,,,<<-<<.<<<.---<<--<<<<.<<______>>-->>>>-->>---->>>>>-->><<<-<<----<-<<-- CS
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5S_rRNA 1 gccuGcggcCAUAccagc.gcg.aAagcACcgGa.uCCCAUCcGaACuCcgAAguUAAGcgcgcUugggCcagggUAGUAcuag 81
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5S_rRNA 1 gccuGcggcCAUAccagc.gcg.aAagcACcgGa.uCCCAUCcGaACuCcgAAguUAAGcgcgcUugggCcagggUAGUAcuag 81
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: :: ::: AUAC + :: G:AC:::: CC AUC+G ::::AA:U AAG :: U+ GGC: :G GUA U+G
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ENA|BK006947|BK006947.3 7085 GAGAUGGUAUAUACUGUAgCAUcCGUGUACGUAUgACCGAUCAGA--AUACAAGUGAAGGUGAGUAUGGCAUGUG--GUAGUGG 7006
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**************976325541459999****989999999999..89**********9999999*********..******* PP
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v NC
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---<<____>>----->>->-->>->>>.))))))))): CS
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5S_rRNA 82 GaUGgGuGAcCuCcUGggAAgaccagGu.gccgCaggcc 119
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5S_rRNA 82 GaUGgGuGAcCuCcUGggAAgaccagGu.gccgCaggcc 119
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GAU :G G : GG AAG+: A:GU ::: :: : C
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ENA|BK006947|BK006947.3 7005 GAUUAGAG-UGGUAGGGUAAGUAUAUGUgUAUUAUUUAC 6968
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***99988.689999************************ PP
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@ -368,7 +368,7 @@ Hit scores:
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(2) ? 0.49 19.8 0.0 ENA|BK006948|BK006948.2 737498 737324 - cm no 0.39 TPA_inf: Saccharomyces cerevisiae S288C chromosome XV,
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(3) ? 5.7 15.3 0.0 ENA|BK006947|BK006947.3 266059 266208 + cm no 0.39 TPA_inf: Saccharomyces cerevisiae S288C chromosome XIV
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(4) ? 6.6 15.1 0.4 ENA|BK006949|BK006949.2 443393 443253 - cm no 0.32 TPA_inf: Saccharomyces cerevisiae S288C chromosome XVI
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(5) ? 7.1 14.9 0.0 ENA|BK006939|BK006939.2 190882 191043 + cm no 0.41 TPA_inf: Saccharomyces cerevisiae S288C chromosome V,
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(5) ? 7.1 14.9 0.0 ENA|BK006939|BK006939.2 190882 191043 + cm no 0.41 TPA_inf: Saccharomyces cerevisiae S288C chromosome V,
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Hit alignments:
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@ -379,14 +379,14 @@ Hit alignments:
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v NC
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::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________>>>>>>,<<<<<<<___>>> CS
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U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCUUauCAGUuUAAuAuCUGauAuggcccccAuuggg 80
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U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCUUauCAGUuUAAuAuCUGauAuggcccccAuuggg 80
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AU+ UCU+:GCCUUUUGGC:+AGAUCAAGUGUAGUAUCUGUUCUU:UCAGU+UAA+A+CUGA:AUG: CC:CA+UG:G
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ENA|BK006936|BK006936.2 681858 AUC---UCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGA-CCUCAAUGAG 681783
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***...************************************************************999.********** PP
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v NC
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>>>>,,,.,,,,,,,,,,,,,,,,,,,,,,,,,~~~~~~~~~~~~::::::: CS
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U2 81 ggccaau.uauaUUAaauuaAUUUUUggaacua*[34]**[40]*Acccuuu 193
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U2 81 ggccaau.uauaUUAaauuaAUUUUUggaacua*[34]**[40]*Acccuuu 193
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G+:CA+U U+UUAA+UU AC +UUU
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ENA|BK006936|BK006936.2 681782 GCUCAUUaCCUUUUAAUUUG-------------*[ 6]**[ 3]*ACAUUUU 681747
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******86555555555443................7.....9..******* PP
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@ -398,14 +398,14 @@ Hit alignments:
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NC
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::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<~~~~~~>>>>>>,<<<<<<<___>>>>> CS
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U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCUUauCAG*[ 8]*CUGauAuggcccccAuuggggg 82
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U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCUUauCAG*[ 8]*CUGauAuggcccccAuuggggg 82
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AU+CC U U+ GCC U GGC +A AU AAGU UA UA C GUUCU:A::A U::U: ::::::A U:::::
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ENA|BK006948|BK006948.2 737498 AUCCCAUAUUUGCCAUC-GGCAUAUAUUAAGUAUAUUAGCAGUUCUAAUUAC*[88]*GUAGUUGGAAGGAUACUAUCCU 737338
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**************999.*******************************996...*..6999999999999999999999 PP
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NC
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>>,,,,,,,,,,,,,,,,,,,,,,,,,,,,~~~~~~~~~~~~::::::: CS
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U2 83 ccaauuauaUUAaauuaAUUUUUggaacua*[34]**[40]*Acccuuu 193
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U2 83 ccaauuauaUUAaauuaAUUUUUggaacua*[34]**[40]*Acccuuu 193
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: A+ A CC++U
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ENA|BK006948|BK006948.2 737337 UUAU--------------------------*[ 2]**[ 1]*AUCCCCU 737324
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9987.............................6.....9..******* PP
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@ -417,14 +417,14 @@ Hit alignments:
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v v v NC
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::::::.<<<.-<<<<____>>>>->>>,,,,.,,,,,,~~~~~~,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< CS
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U2 1 AUacCU.UCu.cgGCcUUUUgGCuaaGAUCAA.GUGUAG*[48]*aauuauaUUAaauuaAUUUUUggaacuaGuggggg 119
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U2 1 AUacCU.UCu.cgGCcUUUUgGCuaaGAUCAA.GUGUAG*[48]*aauuauaUUAaauuaAUUUUUggaacuaGuggggg 119
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AU UCU + G C UUG C AGAU A GUGUAG UUAUAU +UU AU UUU G +A:: : G:
|
||||
ENA|BK006947|BK006947.3 266059 AUGUUGaUCUaUCGUCAAUUGACCCAGAUGAUaGUGUAG*[ 1]*-GUUAUAUAGUUUUGAUAUUUUGGCGAAAAGUUGA 266132
|
||||
*****9****999****************9988999987...5...3377778888888888888888888888888888 PP
|
||||
|
||||
v v v v v v v v v NC
|
||||
<----.<<<<<__>>>>>-..->>>>>>>>,,<<<<<<-<<<<<<___________>>>>>>-->>>>>>::::::: CS
|
||||
U2 120 cauuu.uggGCUUGCccau..ugcccccaCacggguugaccuggcaUUGCAcUaccgccagguucagcccAcccuuu 193
|
||||
U2 120 cauuu.uggGCUUGCccau..ugcccccaCacggguugaccuggcaUUGCAcUaccgccagguucagcccAcccuuu 193
|
||||
:A+U+ U :GCUUGC: AU +::C : :: G: :AC: G U GCA UA+ C :GU+: :C +U +
|
||||
ENA|BK006947|BK006947.3 266133 GAAUAuUGCGCUUGCGUAUauAUUCCAUUUGAGGUGGCACUAGAGCUCGCAUUAU-UACCAGUAGUGGCAGGAUUGC 266208
|
||||
888888**************99999******************************.99******************* PP
|
||||
@ -436,22 +436,22 @@ Hit alignments:
|
||||
|
||||
v v v v NC
|
||||
::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,~~~~~~,<<<<<<<___>>>>>>>,,,..,,,,, CS
|
||||
U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCU*[20]*uggcccccAuugggggccaau..uauaU 92
|
||||
A U C:+G C G UA:G UCAAG UAGUAU UGUUCU ::: C A+ G :::++U
|
||||
U2 1 AUacCUUCucgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCU*[20]*uggcccccAuugggggccaau..uauaU 92
|
||||
A U C:+G C G UA:G UCAAG UAGUAU UGUUCU ::: C A+ G :::++U
|
||||
ENA|BK006949|BK006949.2 443393 CCAUUUACAUGAACCCCAGUUUAUGUUCAAG--UAGUAUAUGUUCU*[ 4]*-UCAACGCAAACUGCUGAUUUcaCC--- 443322
|
||||
***************999************6..7**********98...4...222222222222222222222222... PP
|
||||
|
||||
v v v v v v v NC
|
||||
,,,,,,,,,,,,,,,,,,,,<<<<<<<<----<<<<<__>>>>>-->>>>>>>>,,<<<<<<-<<<<<<___________ CS
|
||||
U2 93 UAaauuaAUUUUUggaacuaGugggggcauuuuggGCUUGCccauugcccccaCacggguugaccuggcaUUGCAcUacc 172
|
||||
:U : :::+U U UU+ ::: : A:A+ ::: G+C: : :A U CAC AC
|
||||
U2 93 UAaauuaAUUUUUggaacuaGugggggcauuuuggGCUUGCccauugcccccaCacggguugaccuggcaUUGCAcUacc 172
|
||||
:U : :::+U U UU+ ::: : A:A+ ::: G+C: : :A U CAC AC
|
||||
ENA|BK006949|BK006949.2 443321 --------------------AUUGAAUAUUGU-----UUA------UAUAUGAUAUAUACCGUCAAAUUACUUCACGAC- 443274
|
||||
....................222222222222.....221......3333345599***********************. PP
|
||||
|
||||
v v v NC
|
||||
>>>>>>-->>>>>>::::::: CS
|
||||
U2 173 gccagguucagcccAcccuuu 193
|
||||
: : :G++C ::: + U+
|
||||
U2 173 gccagguucagcccAcccuuu 193
|
||||
: : :G++C ::: + U+
|
||||
ENA|BK006949|BK006949.2 443273 AGUGUGAACUGUGAUAAAUCA 443253
|
||||
********************* PP
|
||||
|
||||
@ -462,21 +462,21 @@ Hit alignments:
|
||||
|
||||
v v NC
|
||||
::::::<<<.-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,~~~~~~~~~~~~,,,,,,,,,,,,,,,,,,,,, CS
|
||||
U2 1 AUacCUUCu.cgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCU*[20]**[18]*aauuauaUUAaauuaAUUUUU 105
|
||||
U2 1 AUacCUUCu.cgGCcUUUUgGCuaaGAUCAAGUGUAGUAUCUGUUCU*[20]**[18]*aauuauaUUAaauuaAUUUUU 105
|
||||
AU CC U : +: C: UUU:G : : AUCA AA ++U+UUAAAU AA UUUU
|
||||
ENA|BK006939|BK006939.2 190882 AUUCCAUGAuUUCCUGUUUAGCU-UCAUCA-----------------*[ 4]**[ 4]*AACAUUUUUAAAUGAAAUUUU 190939
|
||||
*******9955678899999976.799997....................9.....9..77699**************** PP
|
||||
|
||||
vv v v vv v NC
|
||||
,,,,,,,<<<<<<<<----.<<<<<_._>>>>>-.........->>>>>>>>,,<<<<<<-<<<<<<__________... CS
|
||||
U2 106 ggaacuaGugggggcauuu.uggGCU.UGCccau.........ugcccccaCacggguugaccuggcaUUGCAcUac... 171
|
||||
+ + +GU:: : AUU :G:GCU UGC:C: + : ::ACA+ :: :: : :::: U CAC AC
|
||||
U2 106 ggaacuaGugggggcauuu.uggGCU.UGCccau.........ugcccccaCacggguugaccuggcaUUGCAcUac... 171
|
||||
+ + +GU:: : AUU :G:GCU UGC:C: + : ::ACA+ :: :: : :::: U CAC AC
|
||||
ENA|BK006939|BK006939.2 190940 AAUGUCUGUUUCCUUAUUGaAGAGCUuUGCUCUGgauuuuccaACAUUAAACAUGCCGCCGAGGCCUCCUCCACCACcac 191019
|
||||
***********9999998899999964799999999999999999999**************************999888 PP
|
||||
|
||||
v NC
|
||||
.._>>>>>>-->>>>>>::::::: CS
|
||||
U2 172 ..cgccagguucagcccAcccuuu 193
|
||||
U2 172 ..cgccagguucagcccAcccuuu 193
|
||||
+:::: :UU:: :: + CU+U
|
||||
ENA|BK006939|BK006939.2 191020 caUUGGCAUUUGGUGGUGAACUAU 191043
|
||||
988********************* PP
|
||||
|
||||
Reference in New Issue
Block a user