# STOCKHOLM 1.0

#=GF AC   RF01113
#=GF ID   BMV3_UPD-PK3
#=GF DE   Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
#=GF AU   Wilkinson A; 0000-0001-7406-0151
#=GF SE   Pseudobase
#=GF SS   Pseudobase
#=GF GA   36.00
#=GF TC   37.00
#=GF NC   33.30
#=GF TP   Cis-reg;
#=GF BM   cmbuild -F CM SEED
#=GF CB   cmcalibrate --mpi CM
#=GF SM   cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 549862.597050 CM SEQDB
#=GF DR   PKBASE; PKB00156;
#=GF DR   SO; 0005836; regulatory_region;
#=GF DR   GO; 1904973; positive regulation of viral translation;
#=GF DR   GO; 0046782; regulation of viral transcription;
#=GF RN   [1]
#=GF RM   7684465
#=GF RT   Contributions of the brome mosaic virus RNA-3 3'-nontranslated region to
#=GF RT   replication and translation.
#=GF RA   Lahser FC, Marsh LE, Hall TC
#=GF RL   J Virol. 1993;67:3295-3303.
#=GF WK   UPSK_RNA
#=GF **   seedtax: Viruses; unclassified sequences
#=GF SQ   2



X01678.1/2648-2670 ACUUUGGCUAAGUUUAAAAGCUU
X58459.1/659-681   ACUUUGGCUAAGGUUAAAAGCUU
#=GC SS_cons       :<<<_AAAA>>>::::::aaaa:
#=GC RF            ACUUUGGCUAAGuUUAAAAGCUU
//
