Command line: [exonerate -m protein2dna scer_cad1_prot.fa scer_cad1frameshift.fa --showvulgar no --bestn 3]
Hostname: [blackbriar]

C4 Alignment:
------------
         Query: sp|P24813|YAP2_YEAST AP-1-like transcription activator YAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAD1 PE=1 SV=2
        Target: gi|296143771|ref|NM_001180731.1| Saccharomyces cerevisiae S288c Cad1p (CAD1) mRNA, complete cds
         Model: protein2dna:local
     Raw score: 367
   Query range: 330 -> 409
  Target range: 216 -> 455

 331 : HisThrLysThrIleArgThrGlnSerGluAlaIleGluHisIleSerSerAlaIleSerAsnG : 352
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
       HisThrLysThrIleArgThrGlnSerGluAlaIleGluHisIleSerSerAlaIleSerAsnG
 217 : CATACTAAAACAATTCGAACCCAATCTGAAGCAATTGAACACATTAGCAGCGCCATATCGAATG : 280

 353 : lyLysAlaSerCysTyrHisIleLeuGluGluIleSerSerLeuProLysTyrSerSerLeuAs : 373
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
       lyLysAlaSerCysTyrHisIleLeuGluGluIleSerSerLeuProLysTyrSerSerLeuAs
 281 : GAAAAGCGTCTTGCTACCACATTCTCGAAGAGATCTCCTCCCTACCAAAATATTCATCGTTGGA : 343

 374 : p--IleAspAspLeuCysSerGluLeuIleIleLysAlaLysCysThrAspAspCysLysIleV : 394
       |##|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
       p##IleAspAspLeuCysSerGluLeuIleIleLysAlaLysCysThrAspAspCysLysIleV
 344 : CAAATAGATGATTTATGCAGCGAATTAATAATCAAGGCAAAATGTACAGATGACTGCAAAATAG : 408

 395 : alValLysAlaArgAspLeuGlnSerAlaLeuValArgGlnLeuLeu : 409
       |||||||||||||||||||||||||||||||||||||||||||||||
       alValLysAlaArgAspLeuGlnSerAlaLeuValArgGlnLeuLeu
 409 : TAGTCAAAGCTCGCGACTTACAGAGTGCTCTGGTTAGACAGCTCCTG : 455


C4 Alignment:
------------
         Query: sp|P24813|YAP2_YEAST AP-1-like transcription activator YAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAD1 PE=1 SV=2
        Target: gi|296143771|ref|NM_001180731.1| Saccharomyces cerevisiae S288c Cad1p (CAD1) mRNA, complete cds
         Model: protein2dna:local
     Raw score: 322
   Query range: 6 -> 70
  Target range: 16 -> 208

   7 : LysGlyGlnGlnIleTyrLeuAlaGlyAspMetLysLysGlnMetLeuLeuAsnLysAspGlyT :  28
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
       LysGlyGlnGlnIleTyrLeuAlaGlyAspMetLysLysGlnMetLeuLeuAsnLysAspGlyT
  17 : AAAGGTCAGCAAATATATTTAGCAGGTGACATGAAGAAGCAAATGTTGCTAAATAAAGATGGAA :  80

  29 : hrProLysArgLysValGlyArgProGlyArgLysArgIleAspSerGluAlaLysSerArgAr :  49
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
       hrProLysArgLysValGlyArgProGlyArgLysArgIleAspSerGluAlaLysSerArgAr
  81 : CACCTAAGAGGAAGGTGGGCAGACCAGGCAGAAAAAGGATTGACTCTGAAGCTAAGAGTAGGAG : 143

  50 : gThrAlaGlnAsnArgAlaAlaGlnArgAlaPheArgAspArgLysGluAlaLysMetLysSer :  70
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
       gThrAlaGlnAsnArgAlaAlaGlnArgAlaPheArgAspArgLysGluAlaLysMetLysSer
 144 : GACTGCCCAGAATAGGGCAGCTCAACGAGCGTTCCGAGATAGGAAAGAAGCCAAAATGAAGAGT : 206

-- completed exonerate analysis
