#FormatVersion Mauve1
#Sequence1File	equCab1.fa
#Sequence1Format	FastA
#Sequence2File	canFam2.fa
#Sequence2Format	FastA
#Sequence3File	mm9.fa
#Sequence3Format	FastA
#BackboneFile	separate.xmfa.bbcols
> 1:1-50 - equCab1.fa
TAAGCCCTCCTAGCACACACCCGGAGTGGCC-GGGCCGTAC-TTTCCTTTTC
> 2:1-49 + canFam2.fa
CAAGCCCTGC--GCGCTCAGCCGGAGTGTCCCGGGCCCTGC-TTTCCTTTTC
> 3:1-19 - mm9.fa
---------------------------------GGATCTACTTTTCCTCTTC
=
> 3:20-41 + mm9.fa
CTGGCGTCCGGAGCTGGGACGT
=
