hmmpfam - search one or more sequences against HMM database
HMMER 2.2g (August 2001)
Copyright (C) 1992-2001 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 Pfam
Sequence file:            L77119.faa
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Query sequence: gi|1522636|gb|AAC37060.1|
Accession:      [none]
Description:    M. jannaschii predicted coding region MJECS02 [Methanococcus jannaschii]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Methylase_M Type I restriction modification system, M  -105.2     0.0022   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Methylase_M   1/1     280   481 ..     1   279 []  -105.2   0.0022

Alignments of top-scoring domains:
Methylase_M: domain 1 of 1, from 280 to 481: score -105.2, E = 0.0022
                   *->lrnELentLWavADkLRGsmDaseYKdyVLGLlFlKYiSdkFlerri
                       ++EL+++  av+   R              L+F K++ dk      
  gi|1522636   280    NTSELDKKKFAVLLMNR--------------LIFIKFLEDK------ 306  

                   eieerktdtesepsldyakledqyeqlededlekedfyqkkGvFilPsql
                   +i+         p +   + +++y   ++   ++ ++y ++      + l
  gi|1522636   307 GIV---------PRDLLRRTYEDY---KKSNVLI-NYYDAY-L----KPL 338  

                   FwdfikeaeknkldedigtdldkifseledqialgypaSeedfkGlfpdl
                   F++++   e ++  ++++ + +    ++      + +       Glf ++
  gi|1522636   339 FYEVLNTPEDER--KENIRT-NPYYKDIPYL---N-G-------GLFRSN 374  

                   dfnsnkLgskaqarnetLtelidlfselelgtPmHNG.dfeelgikDlfG
                   ++  ++ +s+   +ne ++e+i+ +++ +++     G++ +el   D++G
  gi|1522636   375 NV--PNELSFTIKDNEIIGEVINFLERYKFTLSTSEGsEEVELNP-DILG 421  

                   DaYEYLLgkFAeneGKsGGeFYTPqeVSkLiaeiLtigqpsegdfsIYDP
                    +YE L+   Ae   K+ G +YTP e++  ia+ + i+  ++        
  gi|1522636   422 YVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNT-IEPIVVE------- 463  

                   AcGSGSLllqaskflgehdgkrnaisyYGQEsn<-*
                             +++ ++    k+n+i +    s+   
  gi|1522636   464 ---------RFKEIIK--NWKINDINF----ST    481  

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