<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.0.1" release="Wed Aug 22 15:26:53 2018 -0700">
<training_set primary_sequences="common/farntrans5.s" primary_count="5" primary_positions="1900" control_sequences="--none--" control_count="0" control_positions="0">
<alphabet name="Protein" like="protein">
<letter id="A" symbol="A" name="Alanine" colour="0000CC"/>
<letter id="C" symbol="C" name="Cysteine" colour="0000CC"/>
<letter id="D" symbol="D" name="Aspartic acid" colour="FF00FF"/>
<letter id="E" symbol="E" name="Glutamic acid" colour="FF00FF"/>
<letter id="F" symbol="F" name="Phenylalanine" colour="0000CC"/>
<letter id="G" symbol="G" name="Glycine" colour="FFB300"/>
<letter id="H" symbol="H" name="Histidine" colour="FFCCCC"/>
<letter id="I" symbol="I" name="Isoleucine" colour="0000CC"/>
<letter id="K" symbol="K" name="Lysine" colour="CC0000"/>
<letter id="L" symbol="L" name="Leucine" colour="0000CC"/>
<letter id="M" symbol="M" name="Methionine" colour="0000CC"/>
<letter id="N" symbol="N" name="Asparagine" colour="008000"/>
<letter id="P" symbol="P" name="Proline" colour="FFFF00"/>
<letter id="Q" symbol="Q" name="Glutamine" colour="008000"/>
<letter id="R" symbol="R" name="Arginine" colour="CC0000"/>
<letter id="S" symbol="S" name="Serine" colour="008000"/>
<letter id="T" symbol="T" name="Threonine" colour="008000"/>
<letter id="V" symbol="V" name="Valine" colour="0000CC"/>
<letter id="W" symbol="W" name="Tryptophan" colour="0000CC"/>
<letter id="Y" symbol="Y" name="Tyrosine" colour="33E6CC"/>
<letter id="X" symbol="X" aliases="*." equals="ACDEFGHIKLMNPQRSTVWY" name="Any amino acid"/>
<letter id="B" symbol="B" equals="DN" name="Asparagine or Aspartic acid"/>
<letter id="Z" symbol="Z" equals="EQ" name="Glutamine or Glutamic acid"/>
<letter id="J" symbol="J" equals="IL" name="Leucine or Isoleucine"/>
</alphabet>
<sequence id="sequence_0" name="RAM1_YEAST" length="431" weight="1.000000" />
<sequence id="sequence_1" name="PFTB_RAT" length="437" weight="1.000000" />
<sequence id="sequence_2" name="BET2_YEAST" length="325" weight="1.000000" />
<sequence id="sequence_3" name="RATRABGERB" length="331" weight="1.000000" />
<sequence id="sequence_4" name="CAL1_YEAST" length="376" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.0611</value>
<value letter_id="C">0.0368</value>
<value letter_id="D">0.0616</value>
<value letter_id="E">0.0605</value>
<value letter_id="F">0.0437</value>
<value letter_id="G">0.0753</value>
<value letter_id="H">0.03</value>
<value letter_id="I">0.0526</value>
<value letter_id="K">0.0505</value>
<value letter_id="L">0.114</value>
<value letter_id="M">0.0205</value>
<value letter_id="N">0.0337</value>
<value letter_id="P">0.0411</value>
<value letter_id="Q">0.0384</value>
<value letter_id="R">0.0405</value>
<value letter_id="S">0.0779</value>
<value letter_id="T">0.0458</value>
<value letter_id="V">0.0574</value>
<value letter_id="W">0.0179</value>
<value letter_id="Y">0.0411</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme common/farntrans5.s -oc results/meme15 -mod anr -protein -nmotifs 2 -objfun classic -minw 8 -nostatus </command_line>
<host>Timothys-iMac.rd.unr.edu</host>
<type>anr</type>
<nmotifs>2</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<spfun>E-value of product of p-values</spfun>
<min_width>8</min_width>
<max_width>50</max_width>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<substring>yes</substring>
<minsites>2</minsites>
<maxsites>25</maxsites>
<wnsites>0.8</wnsites>
<spmap>pam</spmap>
<spfuzz>120</spfuzz>
<prior>megap</prior>
<beta>9500</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>1900</num_positions>
<seed>0</seed>
<hsfrac>0</hsfrac>
<searchsize>1900</searchsize>
<maxsize>0</maxsize>
<norand>no</norand>
<csites>1000</csites>
<strands>none</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file>prior30.plib</priors_file>
<reason_for_stopping>Stopped because requested number of motifs (2) found.</reason_for_stopping>
<background_frequencies source="--sequences--" order="0">
<alphabet_array>
<value letter_id="A">0.0609</value>
<value letter_id="C">0.037</value>
<value letter_id="D">0.0615</value>
<value letter_id="E">0.0604</value>
<value letter_id="F">0.0437</value>
<value letter_id="G">0.075</value>
<value letter_id="H">0.0302</value>
<value letter_id="I">0.0526</value>
<value letter_id="K">0.0505</value>
<value letter_id="L">0.113</value>
<value letter_id="M">0.0208</value>
<value letter_id="N">0.0339</value>
<value letter_id="P">0.0411</value>
<value letter_id="Q">0.0385</value>
<value letter_id="R">0.0406</value>
<value letter_id="S">0.0776</value>
<value letter_id="T">0.0458</value>
<value letter_id="V">0.0573</value>
<value letter_id="W">0.0182</value>
<value letter_id="Y">0.0411</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="GGFGGRPGKEVDLCYTYCALAALAJLGSLD" alt="MEME-1" width="30" sites="24" ic="57.4" re="51.4" llr="854" p_value="2.4e-148" e_value="2.2e-094" bayes_threshold="6.12445" elapsed_time="0.385681">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-218</value>
<value letter_id="C">-476</value>
<value letter_id="D">-324</value>
<value letter_id="E">-369</value>
<value letter_id="F">-492</value>
<value letter_id="G">351</value>
<value letter_id="H">-61</value>
<value letter_id="I">-474</value>
<value letter_id="K">-334</value>
<value letter_id="L">-558</value>
<value letter_id="M">-392</value>
<value letter_id="N">-225</value>
<value letter_id="P">-103</value>
<value letter_id="Q">-392</value>
<value letter_id="R">-86</value>
<value letter_id="S">-303</value>
<value letter_id="T">-361</value>
<value letter_id="V">-418</value>
<value letter_id="W">-449</value>
<value letter_id="Y">-109</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-81</value>
<value letter_id="C">-469</value>
<value letter_id="D">-328</value>
<value letter_id="E">-377</value>
<value letter_id="F">-1</value>
<value letter_id="G">329</value>
<value letter_id="H">-398</value>
<value letter_id="I">-485</value>
<value letter_id="K">-348</value>
<value letter_id="L">-567</value>
<value letter_id="M">-404</value>
<value letter_id="N">54</value>
<value letter_id="P">-81</value>
<value letter_id="Q">-396</value>
<value letter_id="R">-330</value>
<value letter_id="S">-9</value>
<value letter_id="T">-350</value>
<value letter_id="V">-421</value>
<value letter_id="W">-467</value>
<value letter_id="Y">-482</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-258</value>
<value letter_id="C">-349</value>
<value letter_id="D">-504</value>
<value letter_id="E">-436</value>
<value letter_id="F">380</value>
<value letter_id="G">-47</value>
<value letter_id="H">-393</value>
<value letter_id="I">39</value>
<value letter_id="K">-82</value>
<value letter_id="L">20</value>
<value letter_id="M">-134</value>
<value letter_id="N">-364</value>
<value letter_id="P">-401</value>
<value letter_id="Q">-385</value>
<value letter_id="R">-376</value>
<value letter_id="S">-350</value>
<value letter_id="T">-259</value>
<value letter_id="V">-35</value>
<value letter_id="W">-300</value>
<value letter_id="Y">-200</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">127</value>
<value letter_id="C">-17</value>
<value letter_id="D">-201</value>
<value letter_id="E">-5</value>
<value letter_id="F">-348</value>
<value letter_id="G">114</value>
<value letter_id="H">-187</value>
<value letter_id="I">-312</value>
<value letter_id="K">-81</value>
<value letter_id="L">-63</value>
<value letter_id="M">-205</value>
<value letter_id="N">120</value>
<value letter_id="P">-263</value>
<value letter_id="Q">155</value>
<value letter_id="R">27</value>
<value letter_id="S">92</value>
<value letter_id="T">7</value>
<value letter_id="V">-262</value>
<value letter_id="W">-388</value>
<value letter_id="Y">-304</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-26</value>
<value letter_id="C">143</value>
<value letter_id="D">115</value>
<value letter_id="E">-207</value>
<value letter_id="F">-17</value>
<value letter_id="G">219</value>
<value letter_id="H">-252</value>
<value letter_id="I">-171</value>
<value letter_id="K">-9</value>
<value letter_id="L">-112</value>
<value letter_id="M">95</value>
<value letter_id="N">-185</value>
<value letter_id="P">-16</value>
<value letter_id="Q">-179</value>
<value letter_id="R">-194</value>
<value letter_id="S">-235</value>
<value letter_id="T">-164</value>
<value letter_id="V">-152</value>
<value letter_id="W">-351</value>
<value letter_id="Y">-13</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-146</value>
<value letter_id="C">-17</value>
<value letter_id="D">33</value>
<value letter_id="E">-115</value>
<value letter_id="F">-32</value>
<value letter_id="G">45</value>
<value letter_id="H">38</value>
<value letter_id="I">-310</value>
<value letter_id="K">85</value>
<value letter_id="L">-143</value>
<value letter_id="M">-204</value>
<value letter_id="N">47</value>
<value letter_id="P">-13</value>
<value letter_id="Q">-95</value>
<value letter_id="R">271</value>
<value letter_id="S">-53</value>
<value letter_id="T">-143</value>
<value letter_id="V">-50</value>
<value letter_id="W">83</value>
<value letter_id="Y">-303</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-47</value>
<value letter_id="C">-38</value>
<value letter_id="D">-90</value>
<value letter_id="E">6</value>
<value letter_id="F">-396</value>
<value letter_id="G">-375</value>
<value letter_id="H">0</value>
<value letter_id="I">15</value>
<value letter_id="K">-233</value>
<value letter_id="L">-169</value>
<value letter_id="M">-289</value>
<value letter_id="N">-260</value>
<value letter_id="P">375</value>
<value letter_id="Q">-236</value>
<value letter_id="R">-26</value>
<value letter_id="S">-97</value>
<value letter_id="T">-232</value>
<value letter_id="V">-75</value>
<value letter_id="W">-474</value>
<value letter_id="Y">-425</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-148</value>
<value letter_id="C">-438</value>
<value letter_id="D">-204</value>
<value letter_id="E">99</value>
<value letter_id="F">-31</value>
<value letter_id="G">196</value>
<value letter_id="H">38</value>
<value letter_id="I">-302</value>
<value letter_id="K">-85</value>
<value letter_id="L">-336</value>
<value letter_id="M">-202</value>
<value letter_id="N">205</value>
<value letter_id="P">-266</value>
<value letter_id="Q">-99</value>
<value letter_id="R">26</value>
<value letter_id="S">-54</value>
<value letter_id="T">6</value>
<value letter_id="V">33</value>
<value letter_id="W">83</value>
<value letter_id="Y">-304</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">47</value>
<value letter_id="C">-444</value>
<value letter_id="D">34</value>
<value letter_id="E">57</value>
<value letter_id="F">-349</value>
<value letter_id="G">84</value>
<value letter_id="H">122</value>
<value letter_id="I">-315</value>
<value letter_id="K">209</value>
<value letter_id="L">-342</value>
<value letter_id="M">79</value>
<value letter_id="N">121</value>
<value letter_id="P">-263</value>
<value letter_id="Q">109</value>
<value letter_id="R">-118</value>
<value letter_id="S">-53</value>
<value letter_id="T">-144</value>
<value letter_id="V">-265</value>
<value letter_id="W">-389</value>
<value letter_id="Y">-305</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-160</value>
<value letter_id="C">-417</value>
<value letter_id="D">82</value>
<value letter_id="E">250</value>
<value letter_id="F">-25</value>
<value letter_id="G">-316</value>
<value letter_id="H">123</value>
<value letter_id="I">-255</value>
<value letter_id="K">-111</value>
<value letter_id="L">61</value>
<value letter_id="M">85</value>
<value letter_id="N">-136</value>
<value letter_id="P">-283</value>
<value letter_id="Q">-122</value>
<value letter_id="R">-146</value>
<value letter_id="S">-60</value>
<value letter_id="T">-157</value>
<value letter_id="V">-222</value>
<value letter_id="W">-376</value>
<value letter_id="Y">-14</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">161</value>
<value letter_id="C">-320</value>
<value letter_id="D">-465</value>
<value letter_id="E">-373</value>
<value letter_id="F">-228</value>
<value letter_id="G">-392</value>
<value letter_id="H">-333</value>
<value letter_id="I">13</value>
<value letter_id="K">-325</value>
<value letter_id="L">-90</value>
<value letter_id="M">-101</value>
<value letter_id="N">-301</value>
<value letter_id="P">208</value>
<value letter_id="Q">-309</value>
<value letter_id="R">-7</value>
<value letter_id="S">90</value>
<value letter_id="T">-181</value>
<value letter_id="V">221</value>
<value letter_id="W">-331</value>
<value letter_id="Y">-288</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-441</value>
<value letter_id="C">-652</value>
<value letter_id="D">318</value>
<value letter_id="E">-353</value>
<value letter_id="F">-595</value>
<value letter_id="G">-399</value>
<value letter_id="H">355</value>
<value letter_id="I">-674</value>
<value letter_id="K">-343</value>
<value letter_id="L">-688</value>
<value letter_id="M">-599</value>
<value letter_id="N">-160</value>
<value letter_id="P">-497</value>
<value letter_id="Q">-375</value>
<value letter_id="R">4</value>
<value letter_id="S">-359</value>
<value letter_id="T">-388</value>
<value letter_id="V">-625</value>
<value letter_id="W">-638</value>
<value letter_id="Y">-515</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">47</value>
<value letter_id="C">-316</value>
<value letter_id="D">-480</value>
<value letter_id="E">-387</value>
<value letter_id="F">82</value>
<value letter_id="G">91</value>
<value letter_id="H">-336</value>
<value letter_id="I">-111</value>
<value letter_id="K">-338</value>
<value letter_id="L">103</value>
<value letter_id="M">-98</value>
<value letter_id="N">-307</value>
<value letter_id="P">-15</value>
<value letter_id="Q">-317</value>
<value letter_id="R">-312</value>
<value letter_id="S">-83</value>
<value letter_id="T">170</value>
<value letter_id="V">152</value>
<value letter_id="W">-328</value>
<value letter_id="Y">-285</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">94</value>
<value letter_id="C">221</value>
<value letter_id="D">-399</value>
<value letter_id="E">-311</value>
<value letter_id="F">80</value>
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<letter_ref letter_id="S"/>
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</site>
<right_flank>KLSDKFKEDT</right_flank>
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<left_flank>WLISLKEPNG</left_flank>
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<right_flank>EELTEGVLNY</right_flank>
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<left_flank>LLDRTQKTLT</left_flank>
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<left_flank>ILYCCQEKEQ</left_flank>
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<letter_ref letter_id="D"/>
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<letter_ref letter_id="Y"/>
<letter_ref letter_id="H"/>
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<letter_ref letter_id="A"/>
<letter_ref letter_id="V"/>
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</site>
<right_flank>SCTPNDSPHN</right_flank>
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<left_flank>RYIESLDTNK</left_flank>
<site>
<letter_ref letter_id="H"/>
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<letter_ref letter_id="E"/>
<letter_ref letter_id="Y"/>
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<letter_ref letter_id="H"/>
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<letter_ref letter_id="R"/>
<letter_ref letter_id="L"/>
<letter_ref letter_id="N"/>
<letter_ref letter_id="G"/>
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<letter_ref letter_id="Y"/>
<letter_ref letter_id="W"/>
<letter_ref letter_id="G"/>
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<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
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<letter_ref letter_id="L"/>
<letter_ref letter_id="D"/>
<letter_ref letter_id="S"/>
<letter_ref letter_id="P"/>
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</site>
<right_flank>TFVKEEVISF</right_flank>
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</motif>
<motif id="motif_2" name="JNKEKLLEYILSCQ" alt="MEME-2" width="14" sites="21" ic="28.1" re="26.3" llr="383" p_value="1.1e-069" e_value="6.1e-021" bayes_threshold="7.42721" elapsed_time="0.501788">
<scores>
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<value letter_id="C">-317</value>
<value letter_id="D">27</value>
<value letter_id="E">33</value>
<value letter_id="F">90</value>
<value letter_id="G">-398</value>
<value letter_id="H">-339</value>
<value letter_id="I">275</value>
<value letter_id="K">-338</value>
<value letter_id="L">92</value>
<value letter_id="M">120</value>
<value letter_id="N">-307</value>
<value letter_id="P">-371</value>
<value letter_id="Q">-319</value>
<value letter_id="R">-313</value>
<value letter_id="S">-306</value>
<value letter_id="T">-180</value>
<value letter_id="V">36</value>
<value letter_id="W">-324</value>
<value letter_id="Y">-282</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-222</value>
<value letter_id="C">-483</value>
<value letter_id="D">147</value>
<value letter_id="E">-172</value>
<value letter_id="F">-406</value>
<value letter_id="G">-315</value>
<value letter_id="H">-236</value>
<value letter_id="I">-354</value>
<value letter_id="K">-129</value>
<value letter_id="L">52</value>
<value letter_id="M">-272</value>
<value letter_id="N">359</value>
<value letter_id="P">-329</value>
<value letter_id="Q">41</value>
<value letter_id="R">35</value>
<value letter_id="S">-228</value>
<value letter_id="T">-207</value>
<value letter_id="V">-34</value>
<value letter_id="W">-450</value>
<value letter_id="Y">-365</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-188</value>
<value letter_id="C">-337</value>
<value letter_id="D">-387</value>
<value letter_id="E">-289</value>
<value letter_id="F">7</value>
<value letter_id="G">-375</value>
<value letter_id="H">-285</value>
<value letter_id="I">-136</value>
<value letter_id="K">226</value>
<value letter_id="L">-18</value>
<value letter_id="M">-114</value>
<value letter_id="N">-245</value>
<value letter_id="P">-348</value>
<value letter_id="Q">-225</value>
<value letter_id="R">230</value>
<value letter_id="S">-277</value>
<value letter_id="T">96</value>
<value letter_id="V">162</value>
<value letter_id="W">-335</value>
<value letter_id="Y">8</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-196</value>
<value letter_id="C">-516</value>
<value letter_id="D">-17</value>
<value letter_id="E">314</value>
<value letter_id="F">-424</value>
<value letter_id="G">-350</value>
<value letter_id="H">51</value>
<value letter_id="I">-371</value>
<value letter_id="K">97</value>
<value letter_id="L">-398</value>
<value letter_id="M">97</value>
<value letter_id="N">-168</value>
<value letter_id="P">-309</value>
<value letter_id="Q">-122</value>
<value letter_id="R">114</value>
<value letter_id="S">-242</value>
<value letter_id="T">-204</value>
<value letter_id="V">-38</value>
<value letter_id="W">-455</value>
<value letter_id="Y">-372</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">57</value>
<value letter_id="C">-486</value>
<value letter_id="D">-252</value>
<value letter_id="E">66</value>
<value letter_id="F">-412</value>
<value letter_id="G">69</value>
<value letter_id="H">-223</value>
<value letter_id="I">-363</value>
<value letter_id="K">316</value>
<value letter_id="L">-386</value>
<value letter_id="M">-255</value>
<value letter_id="N">-149</value>
<value letter_id="P">-317</value>
<value letter_id="Q">-125</value>
<value letter_id="R">56</value>
<value letter_id="S">23</value>
<value letter_id="T">-197</value>
<value letter_id="V">-315</value>
<value letter_id="W">-430</value>
<value letter_id="Y">-355</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-17</value>
<value letter_id="C">-311</value>
<value letter_id="D">-484</value>
<value letter_id="E">-390</value>
<value letter_id="F">-214</value>
<value letter_id="G">-395</value>
<value letter_id="H">194</value>
<value letter_id="I">176</value>
<value letter_id="K">-341</value>
<value letter_id="L">175</value>
<value letter_id="M">-85</value>
<value letter_id="N">-308</value>
<value letter_id="P">-368</value>
<value letter_id="Q">-318</value>
<value letter_id="R">-311</value>
<value letter_id="S">-304</value>
<value letter_id="T">16</value>
<value letter_id="V">135</value>
<value letter_id="W">-322</value>
<value letter_id="Y">-280</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">110</value>
<value letter_id="C">-299</value>
<value letter_id="D">-471</value>
<value letter_id="E">-377</value>
<value letter_id="F">14</value>
<value letter_id="G">-381</value>
<value letter_id="H">-321</value>
<value letter_id="I">227</value>
<value letter_id="K">-327</value>
<value letter_id="L">119</value>
<value letter_id="M">-77</value>
<value letter_id="N">-294</value>
<value letter_id="P">-355</value>
<value letter_id="Q">-305</value>
<value letter_id="R">98</value>
<value letter_id="S">-289</value>
<value letter_id="T">19</value>
<value letter_id="V">30</value>
<value letter_id="W">-308</value>
<value letter_id="Y">10</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-5</value>
<value letter_id="C">-429</value>
<value letter_id="D">47</value>
<value letter_id="E">147</value>
<value letter_id="F">-18</value>
<value letter_id="G">-74</value>
<value letter_id="H">136</value>
<value letter_id="I">-300</value>
<value letter_id="K">-66</value>
<value letter_id="L">-327</value>
<value letter_id="M">-191</value>
<value letter_id="N">61</value>
<value letter_id="P">-248</value>
<value letter_id="Q">170</value>
<value letter_id="R">112</value>
<value letter_id="S">72</value>
<value letter_id="T">-129</value>
<value letter_id="V">-37</value>
<value letter_id="W">-374</value>
<value letter_id="Y">-290</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-579</value>
<value letter_id="C">-589</value>
<value letter_id="D">-670</value>
<value letter_id="E">-653</value>
<value letter_id="F">290</value>
<value letter_id="G">-651</value>
<value letter_id="H">-301</value>
<value letter_id="I">-492</value>
<value letter_id="K">-581</value>
<value letter_id="L">-477</value>
<value letter_id="M">-422</value>
<value letter_id="N">-459</value>
<value letter_id="P">-601</value>
<value letter_id="Q">-496</value>
<value letter_id="R">-506</value>
<value letter_id="S">-572</value>
<value letter_id="T">-535</value>
<value letter_id="V">-493</value>
<value letter_id="W">330</value>
<value letter_id="Y">351</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-272</value>
<value letter_id="C">-391</value>
<value letter_id="D">-471</value>
<value letter_id="E">-429</value>
<value letter_id="F">-53</value>
<value letter_id="G">-471</value>
<value letter_id="H">-431</value>
<value letter_id="I">331</value>
<value letter_id="K">-374</value>
<value letter_id="L">30</value>
<value letter_id="M">-82</value>
<value letter_id="N">-346</value>
<value letter_id="P">-434</value>
<value letter_id="Q">-383</value>
<value letter_id="R">-376</value>
<value letter_id="S">-56</value>
<value letter_id="T">-242</value>
<value letter_id="V">175</value>
<value letter_id="W">-401</value>
<value letter_id="Y">-346</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">61</value>
<value letter_id="C">-413</value>
<value letter_id="D">-197</value>
<value letter_id="E">5</value>
<value letter_id="F">-319</value>
<value letter_id="G">-288</value>
<value letter_id="H">-180</value>
<value letter_id="I">55</value>
<value letter_id="K">173</value>
<value letter_id="L">72</value>
<value letter_id="M">96</value>
<value letter_id="N">-103</value>
<value letter_id="P">-254</value>
<value letter_id="Q">52</value>
<value letter_id="R">39</value>
<value letter_id="S">26</value>
<value letter_id="T">21</value>
<value letter_id="V">-226</value>
<value letter_id="W">-368</value>
<value letter_id="Y">-4</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">40</value>
<value letter_id="C">-393</value>
<value letter_id="D">-233</value>
<value letter_id="E">-177</value>
<value letter_id="F">-373</value>
<value letter_id="G">-93</value>
<value letter_id="H">-230</value>
<value letter_id="I">-345</value>
<value letter_id="K">73</value>
<value letter_id="L">-379</value>
<value letter_id="M">-242</value>
<value letter_id="N">46</value>
<value letter_id="P">-291</value>
<value letter_id="Q">-148</value>
<value letter_id="R">91</value>
<value letter_id="S">273</value>
<value letter_id="T">-32</value>
<value letter_id="V">-308</value>
<value letter_id="W">-411</value>
<value letter_id="Y">-25</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-199</value>
<value letter_id="C">322</value>
<value letter_id="D">-288</value>
<value letter_id="E">-222</value>
<value letter_id="F">-303</value>
<value letter_id="G">15</value>
<value letter_id="H">-252</value>
<value letter_id="I">-214</value>
<value letter_id="K">-123</value>
<value letter_id="L">57</value>
<value letter_id="M">-175</value>
<value letter_id="N">136</value>
<value letter_id="P">-334</value>
<value letter_id="Q">36</value>
<value letter_id="R">117</value>
<value letter_id="S">-250</value>
<value letter_id="T">-188</value>
<value letter_id="V">-194</value>
<value letter_id="W">-377</value>
<value letter_id="Y">6</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-198</value>
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<value letter_id="G">-156</value>
<value letter_id="H">-97</value>
<value letter_id="I">-296</value>
<value letter_id="K">13</value>
<value letter_id="L">-63</value>
<value letter_id="M">37</value>
<value letter_id="N">-167</value>
<value letter_id="P">-289</value>
<value letter_id="Q">400</value>
<value letter_id="R">-154</value>
<value letter_id="S">-252</value>
<value letter_id="T">-207</value>
<value letter_id="V">-271</value>
<value letter_id="W">23</value>
<value letter_id="Y">-359</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
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<alphabet_array>
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<value letter_id="I">0.380952</value>
<value letter_id="K">0.000000</value>
<value letter_id="L">0.238095</value>
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<value letter_id="Y">0.000000</value>
</alphabet_array>
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<value letter_id="K">0.285714</value>
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<contributing_site sequence_id="sequence_1" position="72" strand="none" pvalue="1.55e-07" >
<left_flank>KFNHLVPRLV</left_flank>
<site>
<letter_ref letter_id="L"/>
<letter_ref letter_id="Q"/>
<letter_ref letter_id="R"/>
<letter_ref letter_id="E"/>
<letter_ref letter_id="K"/>
<letter_ref letter_id="H"/>
<letter_ref letter_id="F"/>
<letter_ref letter_id="H"/>
<letter_ref letter_id="Y"/>
<letter_ref letter_id="L"/>
<letter_ref letter_id="K"/>
<letter_ref letter_id="R"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="L"/>
</site>
<right_flank>RQLTDAYECL</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="106" strand="none" pvalue="1.93e-07" >
<left_flank>TYDALDVLGK</left_flank>
<site>
<letter_ref letter_id="D"/>
<letter_ref letter_id="R"/>
<letter_ref letter_id="K"/>
<letter_ref letter_id="V"/>
<letter_ref letter_id="R"/>
<letter_ref letter_id="L"/>
<letter_ref letter_id="I"/>
<letter_ref letter_id="S"/>
<letter_ref letter_id="F"/>
<letter_ref letter_id="I"/>
<letter_ref letter_id="R"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="N"/>
<letter_ref letter_id="Q"/>
</site>
<right_flank>LEDGSFQGDR</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="35" strand="none" pvalue="5.20e-07" >
<left_flank>LLPSSHQGHD</left_flank>
<site>
<letter_ref letter_id="V"/>
<letter_ref letter_id="N"/>
<letter_ref letter_id="R"/>
<letter_ref letter_id="M"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="I"/>
<letter_ref letter_id="I"/>
<letter_ref letter_id="F"/>
<letter_ref letter_id="Y"/>
<letter_ref letter_id="S"/>
<letter_ref letter_id="I"/>
<letter_ref letter_id="S"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="L"/>
</site>
<right_flank>SIFDVNVSAK</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="1.09e-19" num_sites="10"><scanned_site motif_id="motif_1" strand="none" position="144" pvalue="8.68e-17"/>
<scanned_site motif_id="motif_2" strand="none" position="179" pvalue="1.44e-07"/>
<scanned_site motif_id="motif_1" strand="none" position="197" pvalue="1.67e-13"/>
<scanned_site motif_id="motif_2" strand="none" position="228" pvalue="2.07e-08"/>
<scanned_site motif_id="motif_1" strand="none" position="246" pvalue="4.93e-17"/>
<scanned_site motif_id="motif_2" strand="none" position="277" pvalue="2.70e-10"/>
<scanned_site motif_id="motif_1" strand="none" position="295" pvalue="2.87e-16"/>
<scanned_site motif_id="motif_2" strand="none" position="329" pvalue="4.96e-08"/>
<scanned_site motif_id="motif_1" strand="none" position="348" pvalue="5.11e-13"/>
<scanned_site motif_id="motif_2" strand="none" position="413" pvalue="6.96e-09"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="5.87e-22" num_sites="9"><scanned_site motif_id="motif_2" strand="none" position="72" pvalue="1.55e-07"/>
<scanned_site motif_id="motif_1" strand="none" position="137" pvalue="2.44e-19"/>
<scanned_site motif_id="motif_2" strand="none" position="171" pvalue="4.03e-10"/>
<scanned_site motif_id="motif_1" strand="none" position="188" pvalue="3.29e-14"/>
<scanned_site motif_id="motif_2" strand="none" position="219" pvalue="1.26e-08"/>
<scanned_site motif_id="motif_1" strand="none" position="236" pvalue="1.56e-19"/>
<scanned_site motif_id="motif_2" strand="none" position="267" pvalue="6.39e-09"/>
<scanned_site motif_id="motif_1" strand="none" position="285" pvalue="2.62e-16"/>
<scanned_site motif_id="motif_1" strand="none" position="347" pvalue="7.66e-15"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="2.36e-26" num_sites="10"><scanned_site motif_id="motif_2" strand="none" position="6" pvalue="3.17e-09"/>
<scanned_site motif_id="motif_1" strand="none" position="23" pvalue="2.82e-10"/>
<scanned_site motif_id="motif_2" strand="none" position="54" pvalue="1.37e-08"/>
<scanned_site motif_id="motif_1" strand="none" position="72" pvalue="7.21e-14"/>
<scanned_site motif_id="motif_2" strand="none" position="106" pvalue="1.93e-07"/>
<scanned_site motif_id="motif_1" strand="none" position="123" pvalue="2.77e-17"/>
<scanned_site motif_id="motif_1" strand="none" position="171" pvalue="2.53e-18"/>
<scanned_site motif_id="motif_1" strand="none" position="222" pvalue="6.98e-22"/>
<scanned_site motif_id="motif_2" strand="none" position="253" pvalue="5.70e-12"/>
<scanned_site motif_id="motif_1" strand="none" position="271" pvalue="7.19e-17"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="7.64e-26" num_sites="10"><scanned_site motif_id="motif_2" strand="none" position="17" pvalue="1.15e-07"/>
<scanned_site motif_id="motif_2" strand="none" position="65" pvalue="2.71e-12"/>
<scanned_site motif_id="motif_1" strand="none" position="82" pvalue="2.21e-14"/>
<scanned_site motif_id="motif_2" strand="none" position="113" pvalue="1.27e-09"/>
<scanned_site motif_id="motif_1" strand="none" position="130" pvalue="8.90e-19"/>
<scanned_site motif_id="motif_2" strand="none" position="161" pvalue="2.61e-11"/>
<scanned_site motif_id="motif_1" strand="none" position="178" pvalue="6.47e-19"/>
<scanned_site motif_id="motif_1" strand="none" position="226" pvalue="4.67e-21"/>
<scanned_site motif_id="motif_2" strand="none" position="257" pvalue="6.43e-12"/>
<scanned_site motif_id="motif_1" strand="none" position="275" pvalue="1.27e-17"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="5.59e-23" num_sites="6"><scanned_site motif_id="motif_2" strand="none" position="35" pvalue="5.20e-07"/>
<scanned_site motif_id="motif_2" strand="none" position="125" pvalue="1.06e-08"/>
<scanned_site motif_id="motif_2" strand="none" position="189" pvalue="6.30e-11"/>
<scanned_site motif_id="motif_1" strand="none" position="204" pvalue="1.14e-13"/>
<scanned_site motif_id="motif_1" strand="none" position="274" pvalue="1.25e-19"/>
<scanned_site motif_id="motif_1" strand="none" position="326" pvalue="4.42e-13"/>
</scanned_sites>
</scanned_sites_summary>
</MEME>
