hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 ../Shared/Pfam_fs
Sequence file:            single_porphyra_AA.fa
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Query sequence: gi|90819130|dbj|BAE92499.1|
Accession:      [none]
Description:    glutamate synthase [Porphyra yezoensis]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Glu_synthase    Conserved region in glutamate synthas   858.6   3.6e-255   2
GATase_2        Glutamine amidotransferases class-II    731.8   3.9e-226   1
Glu_syn_central Glutamate synthase central domain       649.1   7.9e-213   1
GXGXG           GXGXG motif                             367.3   2.7e-107   1
HdeA            hns-dependent expression protein A (H     9.6      0.015   1
GDC-P           Glycine cleavage system P-protein         7.1      0.086   1
Cache_1         Cache domain                              7.0       0.14   1
IBN_N           Importin-beta N-terminal domain           8.2       0.17   1
DUF1200         Protein of unknown function (DUF1200)     6.7       0.42   1
cobW            CobW/HypB/UreG, nucleotide-binding do     5.1       0.45   1
PUF             Pumilio-family RNA binding repeat         6.5       0.47   1
Arch_flagellin  Archaebacterial flagellin                 4.1       0.66   1
FMN_dh          FMN-dependent dehydrogenase               3.2       0.89   1
RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4             4.6        1.4   1
DUF477          Domain of unknown function (DUF477)       3.8        1.7   1
FRG1            FRG1-like family                          0.2        1.7   1
DUF1393         Protein of unknown function (DUF1393)     3.1          2   1
tRNA_anti       OB-fold nucleic acid binding domain       4.9          2   1
SelT            Selenoprotein T                           3.1        2.2   1
RNase_PH_C      3' exoribonuclease family, domain 2       4.2        2.3   1
Pencillinase_R  Penicillinase repressor                   3.9        2.5   1
Hormone_4       Neurohypophysial hormones, N-terminal     4.4        2.5   1
DSRB            Dextransucrase DSRB                       2.7        2.7   1
FtsK_SpoIIIE    FtsK/SpoIIIE family                       2.6        3.1   1
UBA             UBA/TS-N domain                           4.2        3.1   1
DUF1981         Domain of unknown function (DUF1981)      3.6        3.3   1
Gla             Vitamin K-dependent carboxylation/gam     4.0        3.5   1
Scm3            Centromere protein Scm3                   2.2        3.5   1
Ribosomal_S6    Ribosomal protein S6                      3.3        3.7   1
Cystatin        Cystatin domain                           2.4        3.9   1
Phage_prot_Gp6  Phage portal protein, SPP1 Gp6-like       1.0          4   1
DUF1976         Domain of unknown function (DUF1976)     -1.5        4.3   1
DUF37           Domain of unknown function DUF37          3.0        4.5   1
Flavodoxin_NdrI NrdI Flavodoxin like                      2.1        4.6   1
Bac_rhodopsin   Bacteriorhodopsin                         0.9        4.9   1
Nitro_FeMo-Co   Dinitrogenase iron-molybdenum cofacto     2.1        5.3   1
MoCF_biosynth   Probable molybdopterin binding domain     1.3        5.6   1
PaaA_PaaC       Phenylacetic acid catabolic protein       0.4        5.6   1
Albicidin_res   Albicidin resistance domain               1.7        5.7   1
DUF1514         Protein of unknown function (DUF1514)     3.5        5.7   1
T5orf172        T5orf172 domain                           2.0        6.1   1
Nup133_N        Nup133 N terminal like                   -0.6        6.5   1
BicD            Microtubule-associated protein Bicaud    -1.6        6.8   1
Sel1            Sel1 repeat                               2.5          7   1
CAP_C           DE   Adenylate cyclase associated (CA     1.3        7.4   1
Colicin         Colicin pore forming domain               1.4        7.5   1
MADF_DNA_bdg    Alcohol dehydrogenase transcription f     1.8        8.2   1
DUF258          Protein of unknown function, DUF258       0.3        8.3   1
PspB            Phage shock protein B                     0.4        8.4   1
GspM            General secretion pathway, M protein      1.0        8.6   1
Coq4            Coenzyme Q (ubiquinone) biosynthesis     -0.3        9.1   1
P22_AR_N        P22_AR N-terminal domain                 -0.2        9.5   1
C1_2            C1 domain                                 1.1        9.6   1
Phage_Mu_P      Bacteriophage Mu P protein               -0.4         10   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
GATase_2          1/1      34   404 ..     1   385 []   731.8 3.9e-226
FRG1              1/1      88   107 ..   151   173 ..     0.2      1.7
C1_2              1/1     191   210 ..     9    27 ..     1.1      9.6
MADF_DNA_bdg      1/1     235   261 ..    57    95 .]     1.8      8.2
PaaA_PaaC         1/1     258   269 ..     1    13 [.     0.4      5.6
Albicidin_res     1/1     274   289 ..    50    65 ..     1.7      5.7
UBA               1/1     311   331 ..    18    38 .]     4.2      3.1
Gla               1/1     342   357 ..    27    42 .]     4.0      3.5
RNA_pol_Rpb2_4    1/1     369   381 ..     1    13 [.     4.6      1.4
MoCF_biosynth     1/1     371   396 ..    23    49 ..     1.3      5.6
DUF1200           1/1     389   401 ..     1    13 [.     6.7     0.42
Nup133_N          1/1     397   419 ..   475   498 .]    -0.6      6.5
DUF1976           1/1     428   448 ..  1296  1319 .]    -1.5      4.3
Bac_rhodopsin     1/1     445   472 ..   219   250 .]     0.9      4.9
Coq4              1/1     459   481 ..    60    82 ..    -0.3      9.1
Glu_syn_central   1/1     478   773 ..     1   301 []   649.1 7.9e-213
Flavodoxin_NdrI   1/1     488   497 ..   122   131 .]     2.1      4.6
P22_AR_N          1/1     524   541 ..   110   126 .]    -0.2      9.5
Cache_1           1/1     537   557 ..     1    23 [.     7.0     0.14
Glu_synthase      1/2     650   676 ..   297   323 ..     1.3        3
HdeA              1/1     727   749 ..    58    79 .]     9.6    0.015
Sel1              1/1     729   745 ..    32    49 .]     2.5        7
DUF1981           1/1     765   787 ..    62    88 .]     3.6      3.3
tRNA_anti         1/1     818   839 ..    54    85 .]     4.9        2
Cystatin          1/1     826   859 ..     1    38 [.     2.4      3.9
RNase_PH_C        1/1     827   846 ..    64    84 .]     4.2      2.3
Glu_synthase      2/2     830  1216 ..     1   412 []   857.3   9e-255
DUF258            1/1     839   860 ..   282   305 .]     0.3      8.3
Pencillinase_R    1/1     856   894 ..    84   118 .]     3.9      2.5
SelT              1/1     872   885 ..    96   111 .]     3.1      2.2
Nitro_FeMo-Co     1/1     879   897 ..    87   105 .]     2.1      5.3
DUF37             1/1     927   934 ..    61    68 .]     3.0      4.5
Scm3              1/1     953   963 ..   103   113 .]     2.2      3.5
cobW              1/1    1038  1058 ..   202   222 .]     5.1     0.45
Arch_flagellin    1/1    1050  1072 ..   197   219 .]     4.1     0.66
DUF1393           1/1    1055  1068 ..     1    14 [.     3.1        2
FtsK_SpoIIIE      1/1    1107  1143 ..   163   198 ..     2.6      3.1
FMN_dh            1/1    1109  1148 ..   291   330 ..     3.2     0.89
DSRB              1/1    1120  1134 ..     1    16 [.     2.7      2.7
Phage_Mu_P        1/1    1122  1131 ..     1    10 [.    -0.4       10
Hormone_4         1/1    1168  1176 ..     1     9 []     4.4      2.5
GDC-P             1/1    1205  1225 ..    10    30 ..     7.1    0.086
PspB              1/1    1268  1276 ..     1     9 [.     0.4      8.4
T5orf172          1/1    1271  1293 ..    35    58 ..     2.0      6.1
CAP_C             1/1    1283  1292 ..   161   170 .]     1.3      7.4
GXGXG             1/1    1290  1485 ..     1   228 []   367.3 2.7e-107
DUF1514           1/1    1453  1469 ..    50    66 .]     3.5      5.7
Colicin           1/1    1456  1467 ..   192   203 .]     1.4      7.5
Ribosomal_S6      1/1    1461  1481 ..    16    36 ..     3.3      3.7
BicD              1/1    1465  1481 ..     1    17 [.    -1.6      6.8
PUF               1/1    1470  1486 ..    19    35 .]     6.5     0.47
DUF477            1/1    1472  1495 ..     1    24 [.     3.8      1.7
Phage_prot_Gp6    1/1    1479  1492 ..     1    14 [.     1.0        4
IBN_N             1/1    1498  1516 ..     1    20 [.     8.2     0.17
GspM              1/1    1506  1520 ..     1    15 [.     1.0      8.6

Alignments of top-scoring domains:
GATase_2: domain 1 of 1, from 34 to 404: score 731.8, E = 3.9e-226
                CS    EEEEEEEEETSSHSBHHHHHHHHHHHHHGGGGSSCSTTSSCECEEEE
                   *->CGvlGfiAhikgkpshkivedaleaLerLeHRGavgADgktGDGAGI
                      CGv GfiA+ ++ ++hkiv +aleaL+++eHRGa++AD ++GDGAGI
  gi|9081913    34    CGV-GFIADVNNVANHKIVVQALEALTCMEHRGACSADRDSGDGAGI 79   

                CS EEECTCCCHHHHHHHCT----S GC-EEEEEEE-SSHHHHHHHHHHHHHH
                   ltqiPdgFFrevakelGieLpe.gqYAVGmvFLPqdelaraearkifEki
                    t+iP+++F++  ++++i++ ++   +VGm+FLP   l+    + i+E +
  gi|9081913    80 TTAIPWNLFQKSLQNQNIKFEQnDSVGVGMLFLPAHKLKES--KLIIETV 127  

                CS HHHTT-EEEEEEE--B-GGGS-HHHHHC--EEEEEEEE-TT--HHHHHHC
                   aeeeGLeVLGWReVPvnnsvLGetAlatePvIeQvFvgapsgdgedfErr
                   ++ee+Le++GWR VP+  +vLG++A  + P++eQvF+ +++ +++ +E++
  gi|9081913   128 LKEENLEIIGWRLVPTVQEVLGKQAYLNKPHVEQVFCKSSNLSKDRLEQQ 177  

                CS EEEEECHSCHHHHTHHH.    BEEEEEESSEEEEEECC-GGGHHHHBHG
                   LyviRkrieksivaenvn....fYiCSLSsrTIVYKGMLtseQLgqFYpD
                   L+++Rk+iek+i+  + +  ++fYiCSLS++TIVYKGM++s++LgqFY+D
  gi|9081913   178 LFLVRKKIEKYIGINGKDwaheFYICSLSCYTIVYKGMMRSAVLGQFYQD 227  

                CS GGSTTEEBSEEEEEECESSSSSCTGGGSSCEEECCCTTCEEEEEEEEETT
                   LqderfeSalAivHsRFSTNTfPsWplAQPfRVnslwgggivlAHNGEIN
                   L++++++S++Ai+H+RFSTNT+P+WplAQP+R         ++ HNGEIN
  gi|9081913   228 LYHSEYTSSFAIYHRRFSTNTMPKWPLAQPMR---------FVSHNGEIN 268  

                CS THHHHHHHHHHTSCCCSSTTCGHHHHCC-SSS-TTSCHHHHHHHHHHHHH
                   TlrgNrnwMraRegvlksplFgddldkLkPIvneggSDSaalDnvlEllv
                   Tl gN nwM++Re +l+s++++d++++LkPI n+++SDSa+lD ++Ell+
  gi|9081913   269 TLLGNLNWMQSREPLLQSKVWKDRIHELKPITNKDNSDSANLDAAVELLI 318  

                CS HTT--HHHHHHHHS----TT-GGGTST-HHHHHHHHHHHHHHCCHCCEEE
                   raGRslpeAlMMlIPEAWqnnpdmdkdrpekraFYeylsglmEPWDGPAa
                   ++GRs++eAlM+l+PEA+qn+pd   +++e+ +FYey+sgl+EPWDGPA+
  gi|9081913   319 ASGRSPEEALMILVPEAFQNQPDFA-NNTEISDFYEYYSGLQEPWDGPAL 367  

                CS EEEETSSEEEEEEETTTSCESEEEEEEEEEE.TTEEEEEESSC   
                   lvftDGryavgAtLDRNGLTRPaRygiTrdldkDglvvvaSEa<-*
                   +vft+G++ +gAtLDRNGL RPaRy+iT    kD+lv+v+SE+   
  gi|9081913   368 VVFTNGKV-IGATLDRNGL-RPARYVIT----KDNLVIVSSES    404  

FRG1: domain 1 of 1, from 88 to 107: score 0.2, E = 1.7
                   *->FQkfKvDLqdrklrinekDkkel<-*
                      FQk+   Lq+  +  +++D+ ++   
  gi|9081913    88    FQKS---LQNQNIKFEQNDSVGV    107  

C1_2: domain 1 of 1, from 191 to 210: score 1.1, E = 9.6
                   *->idgfyg...fYsCkkccddftl<-*
                      i+g+++ ++fY C+  c  +t+   
  gi|9081913   191    INGKDWaheFYICSLSC--YTI    210  

MADF_DNA_bdg: domain 1 of 1, from 235 to 261: score 1.8, E = 8.2
                   *->drYrrelrkirqgnsegsstgsgesykskWryyeelsFL<-*
                      +++  ++r+               ++ +kW+++  ++F    
  gi|9081913   235    SSFAIYHRRFS------------TNTMPKWPLAQPMRFV    261  

PaaA_PaaC: domain 1 of 1, from 258 to 269: score 0.4, E = 5.6
                CS    X............   
                   *->MYnFvEHGGvint<-*
                      M  Fv H G int   
  gi|9081913   258    M-RFVSHNGEINT    269  

Albicidin_res: domain 1 of 1, from 274 to 289: score 1.7, E = 5.7
                   *->LrlmharEPsLrkgtG<-*
                      L+ m+ rEP L+ +++   
  gi|9081913   274    LNWMQSREPLLQSKVW    289  

UBA: domain 1 of 1, from 311 to 331: score 4.2, E = 3.1
                CS    HHHHHHHHHTTT-HHHHHHHH   
                   *->eeakkALeatngnverAvewL<-*
                      ++a++ L a++ ++e+A+++L   
  gi|9081913   311    DAAVELLIASGRSPEEALMIL    331  

Gla: domain 1 of 1, from 342 to 357: score 4.0, E = 3.5
                CS    CSSHHHHHHHHHHCTC   
                   *->fednegtkefwrkYfg<-*
                      f++n+++  f++ Y g   
  gi|9081913   342    FANNTEISDFYEYYSG    357  

RNA_pol_Rpb2_4: domain 1 of 1, from 369 to 381: score 4.6, E = 1.4
                CS    EEETTEEEEEESS   
                   *->VYvNGklvGthrn<-*
                      V+ NGk++G + +   
  gi|9081913   369    VFTNGKVIGATLD    381  

MoCF_biosynth: domain 1 of 1, from 371 to 396: score 1.3, E = 5.6
                CS    CHHHHHHHHHHHTTTCEEEEEEEE-SS   
                   *->tNgpmLaalLresaGaevirygiVpDd<-*
                      tNg+ + a L +  G  ++ry+i +D+   
  gi|9081913   371    TNGKVIGATLDR-NGLRPARYVITKDN    396  

DUF1200: domain 1 of 1, from 389 to 401: score 6.7, E = 0.42
                   *->kYvltedtLlIks<-*
                      +Yv+t+d L+I+s   
  gi|9081913   389    RYVITKDNLVIVS    401  

Nup133_N: domain 1 of 1, from 397 to 419: score -0.6, E = 6.5
                   *->lylltrnsGvvrIeHaleedstne<-*
                      l++ + +sGvv++e +  + s  +   
  gi|9081913   397    LVIVSSESGVVQVE-PGNVKSKGR    419  

DUF1976: domain 1 of 1, from 428 to 448: score -1.5, E = 4.3
                   *->VsvYiyFkevtdnksLsEysVtyk<-*
                      V++++   ++++nk ++  sVt k   
  gi|9081913   428    VDIFS--HKILNNKEIK-TSVTTK    448  

Bac_rhodopsin: domain 1 of 1, from 445 to 472: score 0.9, E = 4.9
                CS    HHHHHHHHHHHHHHHHHCHHHTC---------   
                   *->vvAKVgFgfilLrsravlertvavgsalaage<-*
                      v++K+++g +l ++r++le  +   + l+++    
  gi|9081913   445    VTTKIPYGELLTDARQILE--HK--PFLSDQQ    472  

Coq4: domain 1 of 1, from 459 to 481: score -0.3, E = 9.1
                   *->rrILkEkPRissetldlkkLrkL<-*
                      r+IL  kP  s  ++d kkL +L   
  gi|9081913   459    RQILEHKPFLSDQQVDIKKLMQL    481  

Glu_syn_central: domain 1 of 1, from 478 to 773: score 649.1, E = 7.9e-213
                CS    HHHHHHCTT--HHHHHCTCHHHHHHSS--EE-S---S--CCC-SS--
                   *->llrrQkAFGYTyEdvelvllPMAetGkEalGSMGdDtPLAVLSekpr
                      l+++Q+AFGYT+Edvelv+++MA+++kE++++MGdD+PL +LSek++
  gi|9081913   478    LMQLQTAFGYTNEDVELVIEHMASQAKEPTFCMGDDIPLSILSEKSH 524  

                CS -GGGCEEE----SSS----TTTTGGG-B--EEES--S-TTS-SGGGC-CE
                   lLYdYFKQlFAQVTNPPIDPIREelVMSLetylGpegNlLeptpeqarrl
                   +LYdYFKQ+FAQVTNP+IDP+RE+lVMSL+ ++G+++NlL+  p+ a+++
  gi|9081913   525 ILYDYFKQRFAQVTNPAIDPLRESLVMSLAIQIGHKSNLLDDQPTLAKHI 574  

                CS EESSSB--HHHHHH.HHHH....CCCCEEEEESEEESTTSTTCHHHHHHH
                   kLesPILsnselekmlknidairegfkaatIditFdveeGvdgLeaaLdr
                   kLesP+++++el++ + +     +++++  I+++F  e+G++ ++  + +
  gi|9081913   575 KLESPVINEGELNA-IFE-----SKLSCIRINTLFQLEDGPKNFKQQIQQ 618  

                CS HHHHHHHHHHCT-SEEEEESTCG--CTTEEE--HHHHHHHHHHHHHCTT-
                   lceeAeeAirsGaniivLSDRndildeervaIPaLLAvGAVHhHLIrkgL
                   lce A++Ai +G ni+vLSD+n+ ld+e+v+IP+LLAvGAVHhHLI kgL
  gi|9081913   619 LCENASQAILDGNNILVLSDKNNSLDSEKVSIPPLLAVGAVHHHLINKGL 668  

                CS CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHHHCCCCCCC
                   RtkvslvVETGEaREvHHFAvLiGYGAsAInPYLAyETirdWWlirrGll
                   R+ +s+ VET++++++HHFA+LiGYGAsAI+PYLA+ET r+WW + ++++
  gi|9081913   669 RQEASILVETAQCWSTHHFACLIGYGASAICPYLAFETARHWWSNPKTKM 718  

                CS CHTTTS- T--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EEE
                   lmskGkl.elsleeavkNYrkAiekGlLKIMSKMGISTlqSYrGAQIFEA
                   lmskG+l++++++ea++NY+kA+e+GlLKI+SKMGIS+l+SY+GAQIFE+
  gi|9081913   719 LMSKGRLpACNIQEAQANYKKAVEAGLLKILSKMGISLLSSYHGAQIFEI 768  

                CS SSB-H   
                   vGLsk<-*
                   +GL++   
  gi|9081913   769 LGLGS    773  

Flavodoxin_NdrI: domain 1 of 1, from 488 to 497: score 2.1, E = 4.6
                CS    -HHHHHHHHH   
                   *->TneDVerVrk<-*
                      TneDVe V +   
  gi|9081913   488    TNEDVELVIE    497  

P22_AR_N: domain 1 of 1, from 524 to 541: score -0.2, E = 9.5
                   *->dVLydYWtrkGkAv..NPR<-*
                      ++LydY+  + +A  +NP+   
  gi|9081913   524    HILYDYFK-QRFAQvtNPA    541  

Cache_1: domain 1 of 1, from 537 to 557: score 7.0, E = 0.14
                   *->wTePYvdaalktgdlViTiaqPv<-*
                      +T+P++d +  +++lV ++a+++   
  gi|9081913   537    VTNPAIDPL--RESLVMSLAIQI    557  

Glu_synthase: domain 1 of 2, from 650 to 676: score 1.3, E = 3
                CS    --HHHHHHHHHHHHHCTT-CCCSEEEE   
                   *->lPwelgLaevhqtLvengLRdrVsLia<-*
                      +P  l++ +vh  L++ gLR + s+ +   
  gi|9081913   650    IPPLLAVGAVHHHLINKGLRQEASILV    676  

HdeA: domain 1 of 1, from 727 to 749: score 9.6, E = 0.015
                   *->ACk.QdkkAsFkdKvkaEldKvk<-*
                      AC  Q+ +A++k+ v+a l K+    
  gi|9081913   727    ACNiQEAQANYKKAVEAGLLKIL    749  

Sel1: domain 1 of 1, from 729 to 745: score 2.5, E = 7
                CS    .HHH.HHHHHHHHHHTT-   
                   *->DyekeAlkwyekAAeqGn<-*
                      ++++ A + y+kA e+G    
  gi|9081913   729    NIQE-AQANYKKAVEAGL    745  

DUF1981: domain 1 of 1, from 765 to 787: score 3.6, E = 3.3
                   *->iFgvltlaakeesesivklAfqiid.qi<-*
                      iF++l+l++       v+lAf+ +++qi   
  gi|9081913   765    IFEILGLGSEV-----VNLAFKGTTsQI    787  

tRNA_anti: domain 1 of 1, from 818 to 839: score 4.9, E = 2
                CS    EEEEEEETTSSTSTCTCTT..EEEEEEEEEEE   
                   *->tGkvkkrpggeqNnlkTGeKAlelvveeievl<-*
                      +G v+ rpgge          ++++ +e+      
  gi|9081913   818    YGFVQYRPGGE----------YHINNPEMSKA    839  

Cystatin: domain 1 of 1, from 826 to 859: score 2.4, E = 3.9
                CS    ECEEEEET.STSHHHHHHHHHHHHHHHHHSSSSEEEEE   
                   *->GglspvdpNendpevqealdfAlakyNeksndnylfel<-*
                      Gg   +++    pe  +al+ A+  yN +  +ny++ l   
  gi|9081913   826    GGEYHINN----PEMSKALHQAVRGYNPEYYNNYQSLL    859  

RNase_PH_C: domain 1 of 1, from 827 to 846: score 4.2, E = 2.3
                CS    SSSS.B.HHHHHHHHHHHHHH   
                   *->GkgnglteelleealelAkeg<-*
                      G +++++ +++ +al++A+ g   
  gi|9081913   827    G-EYHINNPEMSKALHQAVRG    846  

Glu_synthase: domain 2 of 2, from 830 to 1216: score 857.3, E = 9e-255
                CS    -SS-HHHHHHHHHHHHC--T-HHHHHHHHHHHHTS.-S-SGGGGEEE
                   *->hrnepeviktlqkavqvpveskpsydkYreplnertpigalrdlLef
                      h n+pe++k l++av+    +   y +Y+ +l +r p++alrdlL++
  gi|9081913   830    HINNPEMSKALHQAVRG--YNPEYYNNYQSLLQNR-PPTALRDLLKL 873  

                CS --SS--......--GGGS--HHHHHTTEEEEEB-CTTC-HHHHHHHHHHH
                   kyaeepldtdkiipieevepaleikkrfctgaMSyGALSeeAheALAiAm
                    ++++p      i+i+eve+++ i + fctg+MS+GALS+e+he+LAiAm
  gi|9081913   874 QSNRAP------ISIDEVESIEDILQKFCTGGMSLGALSRETHETLAIAM 917  

                CS HHCT-EEEETTT---GGGCSB-TTS-T S BTTSTT--S--TT-B---SE
                   nriGtksNtGEGGedperlkpaadlds.G.SpTlpHLkGLqnednarSAI
                   nriG+ksN+GEGGedp r+k + d++s+G+Sp lpHLkGL+n+d+a+SAI
  gi|9081913   918 NRIGGKSNSGEGGEDPVRFKILNDVNSsGtSPLLPHLKGLKNGDTASSAI 967  

                CS EEE-TT-TT--............HHHHCC-SEEEEE---TTSTTT--EE-
                   kQvASGRFGVtkRnGefWeefkRseYLvnAdalEIKiAQGAKPGeGGhLP
                   kQ+ASGRFGVt            +eYL+nA++lEIKiAQGAKPGeGG+LP
  gi|9081913   968 KQIASGRFGVT------------PEYLMNAKQLEIKIAQGAKPGEGGQLP 1005 

                CS GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-.TTS
                   GeKVspeIAriRnstPGvgliSPpPHHDIysiEDLaqLIydLkeindpkA
                   G+K+sp+IA +R ++PGv liSPpPHHDIysiEDL+qLI+dL++in pkA
  gi|9081913  1006 GKKISPYIATLRKCKPGVPLISPPPHHDIYSIEDLSQLIFDLHQIN-PKA 1054 

                CS EEEEEEE-STTHHHHHHH...HHHTT-SEEEEE-TT---SSEECCHHHHC
                   pisVKLVsehgvgtiaaGhmqvakAnADiIlIdGhdGGTGASpktsikha
                   +isVKLVse g+gtiaaG   vak+nADiI+I+GhdGGTGASp++sikha
  gi|9081913  1055 KISVKLVSEIGIGTIAAG---VAKGNADIIQISGHDGGTGASPLSSIKHA 1101 

                CS ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE
                   GlPwelgLaevhqtLvengLRdrVsLiadGGLrTGaDVakAaaLGAdavg
                   G PwelgL+evhq+L en+LRdrV+L++dGGLrTG D+++Aa++GA+++g
  gi|9081913  1102 GSPWELGLSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAEEFG 1151 

                CS -SHHHHHHCT--S---CCCT--TTSSS---CCHH..CT----HHHHHHHH
                   iGTaaLiAlGCimaRvCHtntCPvGvATQDPeLrKrlkfegaperVvNyf
                   +GT+a+iA+GCimaR+CHtn+CPvGvATQ++eLr   +f g+pe +vN+f
  gi|9081913  1152 FGTVAMIATGCIMARICHTNKCPVGVATQREELR--ARFSGVPEALVNFF 1199 

                CS HHHHHHHHHHHHHHT-S   
                   iflaeEvrellaqlGfr<-*
                   +f+  Evre+la+lG++   
  gi|9081913  1200 LFIGNEVREILASLGYK    1216 

DUF258: domain 1 of 1, from 839 to 860: score 0.3, E = 8.3
                CS    HHHHHHHCTSS-HHHHHHHHHHHH   
                   *->AVkaAveeGeIseeRYesYlklle<-*
                      A+ +Av    +++e Y++Y+ ll+   
  gi|9081913   839    ALHQAVR--GYNPEYYNNYQSLLQ    860  

Pencillinase_R: domain 1 of 1, from 856 to 894: score 3.9, E = 2.5
                CS    XXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXX   
                   *->drlfggsvgalvanfleee....klSeddieeLrelLde<-*
                      + l++++++ ++ ++l+ ++++ ++S d++e ++++L++   
  gi|9081913   856    QSLLQNRPPTALRDLLKLQsnraPISIDEVESIEDILQK    894  

SelT: domain 1 of 1, from 872 to 885: score 3.1, E = 2.2
                   *->KLqtGrvYAPPtpqEL<-*
                      KLq++r   P++++E+   
  gi|9081913   872    KLQSNRA--PISIDEV    885  

Nitro_FeMo-Co: domain 1 of 1, from 879 to 897: score 2.1, E = 5.3
                CS    EEE-TTSSBHHHHHHHHHC   
                   *->pikagegetieeaiealqe<-*
                      pi   e e+ie+ + ++ +   
  gi|9081913   879    PISIDEVESIEDILQKFCT    897  

DUF37: domain 1 of 1, from 927 to 934: score 3.0, E = 4.5
                   *->hpGGyDPV<-*
                      ++GG DPV   
  gi|9081913   927    GEGGEDPV    934  

Scm3: domain 1 of 1, from 953 to 963: score 2.2, E = 3.5
                   *->HLraLeteddi<-*
                      HL++L+++d++   
  gi|9081913   953    HLKGLKNGDTA    963  

cobW: domain 1 of 1, from 1038 to 1058: score 5.1, E = 0.45
                CS    ...HHHHHHHHHH-SSS-EEE   
                   *->adlekleadlrrlnpeapiip<-*
                      +dl++l+ dl+++np+a+i     
  gi|9081913  1038    EDLSQLIFDLHQINPKAKISV    1058 

Arch_flagellin: domain 1 of 1, from 1050 to 1072: score 4.1, E = 0.66
                   *->inpstkvrgeVvpenGapgtief<-*
                      inp  k+++++v+e+G+ ++      
  gi|9081913  1050    INPKAKISVKLVSEIGIGTIAAG    1072 

DUF1393: domain 1 of 1, from 1055 to 1068: score 3.1, E = 2
                   *->klSvKtVVAiGIGA<-*
                      k+SvK V  iGIG+   
  gi|9081913  1055    KISVKLVSEIGIGT    1068 

FtsK_SpoIIIE: domain 1 of 1, from 1107 to 1143: score 2.6, E = 3.1
                   *->lviDnydeLaeenlL.ervtsLknqGlsygvhvmata<-*
                      l++ + ++L +en+L++rvt+ + +Gl +g +++++a   
  gi|9081913  1107    LGLSEVHQLLAENQLrDRVTLRVDGGLRTGSDIVLAA    1143 

FMN_dh: domain 1 of 1, from 1109 to 1148: score 3.2, E = 0.89
                CS    HHHHHHHHHCHHTTTSSEEEEESS-SSHHHHHHHHHHTSS   
                   *->LpeVvPIlkeaAvkgdieVllDgGvRRGtDVlKALALGAr<-*
                      L eV  +l e  + +++   +DgG R+G+D++ A  +GA+   
  gi|9081913  1109    LSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAE    1148 

DSRB: domain 1 of 1, from 1120 to 1134: score 2.7, E = 2.7
                   *->mKvndrvtvKtDGgpR<-*
                       ++ drvt + DGg R   
  gi|9081913  1120    -QLRDRVTLRVDGGLR    1134 

Phage_Mu_P: domain 1 of 1, from 1122 to 1131: score -0.4, E = 10
                   *->sntVtLrvgG<-*
                       ++VtLrv+G   
  gi|9081913  1122    RDRVTLRVDG    1131 

Hormone_4: domain 1 of 1, from 1168 to 1176: score 4.4, E = 2.5
                CS    X-TT--TT-   
                   *->CyirnCPrG<-*
                      C  + CP+G   
  gi|9081913  1168    CHTNKCPVG    1176 

GDC-P: domain 1 of 1, from 1205 to 1225: score 7.1, E = 0.086
                   *->eqqeMLstiGlssLddLidat<-*
                      e++e+L+++G++sLdd ++++   
  gi|9081913  1205    EVREILASLGYKSLDDITGQN    1225 

PspB: domain 1 of 1, from 1268 to 1276: score 0.4, E = 8.4
                   *->MsaffLagP<-*
                      M+ ++La+P   
  gi|9081913  1268    MDDDILAIP    1276 

T5orf172: domain 1 of 1, from 1271 to 1293: score 2.0, E = 6.1
                   *->dvvalievedaraklEklLHkrFk<-*
                      d+ a+ ev++a  klE+++ k+Fk   
  gi|9081913  1271    DILAIPEVSNAI-KLETEITKHFK    1293 

CAP_C: domain 1 of 1, from 1283 to 1292: score 1.3, E = 7.4
                CS    EEEEEE----   
                   *->KLvTevveha<-*
                      KL+Te++ h    
  gi|9081913  1283    KLETEITKHF    1292 

GXGXG: domain 1 of 1, from 1290 to 1485: score 367.3, E = 2.7e-107
                CS    EEEEE-TT--STTHHHHHHHHHHCTTTS.S-TTCEEEEEEEEE-TTT
                   *->keeaiiNtdrlvgtrlsgeiakkygeegalpkdtgkivfnGsAGqsf
                      k+++i Nt+r+vgtrlsg iak yg+ g + k+ +k++f+GsAGqsf
  gi|9081913  1290    KHFKIANTNRTVGTRLSGIIAKNYGNTG-F-KGLIKLNFYGSAGQSF 1334 

                CS TTT-BTTEEEEEEEEE-S.TTTTT-ECCEEEEE--TT-.......SS-GG
                   GafmagGvtLeleGdAnddyvGkgmsGGeIvikgnagdpvGnnMdageyv
                   Gaf+a+G++L l+G+And yvGkgm+GG+Ivi+++ag         +e +
  gi|9081913  1335 GAFLASGINLKLMGEAND-YVGKGMNGGSIVIVPPAGT-------IYEDN 1376 

                CS GSEEC-SSTTTT--CEEEEESSEE-TTTTTT-.....CCEEEEESEB.-S
                   gnviaGNtclyGatGGkifiaGdAGerfgvrnkayKdsgatiVveGvaGd
                   ++vi+GNtclyGatGG++f++G+AGerf+vrn     s a+ VveGv Gd
  gi|9081913  1377 NQVIIGNTCLYGATGGYLFAQGQAGERFAVRN-----SLAESVVEGV-GD 1420 

                CS STTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS.......THHHHB
                   hggEYMtGGtivVlGdaGrnvGagMtGGiaYvlgeiedfsyMiatlpgkv
                   h++EYMtGG+ivVlG+aGrnvGagMtGG+aY+l+e+e        + ++v
  gi|9081913  1421 HACEYMTGGVIVVLGKAGRNVGAGMTGGLAYFLDEDE-------NFIDRV 1463 

                CS -CCCEEEE...ES-S......CCHHHHHHHH   
                   nleiVeledlkrievkrkklLpegekqlkel<-*
                   n+eiV+ +   r+ +      ++ge+qlk+l   
  gi|9081913  1464 NSEIVKIQ---RVIT------KAGEEQLKNL    1485 

DUF1514: domain 1 of 1, from 1453 to 1469: score 3.5, E = 5.7
                   *->LeeyrieveRikkevkk<-*
                      L e+++ ++R++ e+ k   
  gi|9081913  1453    LDEDENFIDRVNSEIVK    1469 

Colicin: domain 1 of 1, from 1456 to 1467: score 1.4, E = 7.5
                CS    SHHHHHHHHHCH   
                   *->DdkfveklNkli<-*
                      D++f++ +N +i   
  gi|9081913  1456    DENFIDRVNSEI    1467 

Ribosomal_S6: domain 1 of 1, from 1461 to 1481: score 3.3, E = 3.7
                CS    CCHHHHHHHHHHHHHCTT-EE   
                   *->EqvkqeiekYqkvLtnngAei<-*
                      ++v++ei k+q+v+t++g+e+   
  gi|9081913  1461    DRVNSEIVKIQRVITKAGEEQ    1481 

BicD: domain 1 of 1, from 1465 to 1481: score -1.6, E = 6.8
                   *->gqaysnqrkvAkdGeer<-*
                       + +++qr+ +k Gee+   
  gi|9081913  1465    SEIVKIQRVITKAGEEQ    1481 

PUF: domain 1 of 1, from 1470 to 1486: score 6.5, E = 0.47
                   *->lQkllevateeqkqlil<-*
                      +Q+++++a+eeq ++++   
  gi|9081913  1470    IQRVITKAGEEQLKNLI    1486 

DUF477: domain 1 of 1, from 1472 to 1495: score 3.8, E = 1.7
                   *->gtLspserarLeqalaalEqktga<-*
                      ++++++  ++L   ++  ++ktg+   
  gi|9081913  1472    RVITKAGEEQLKNLIENHAAKTGS    1495 

Phage_prot_Gp6: domain 1 of 1, from 1479 to 1492: score 1.0, E = 4
                   *->eEmikkFidkHklr<-*
                      eE +k++i+ H+++   
  gi|9081913  1479    EEQLKNLIENHAAK    1492 

IBN_N: domain 1 of 1, from 1498 to 1516: score 8.2, E = 0.17
                CS    HHHHHHHHHCCTHHCHHHHH   
                   *->AEkqLeqlekqklPgfllaL<-*
                      A++ Le+++++ lP+f++ +   
  gi|9081913  1498    AHTILEKWNSY-LPQFWQVV    1516 

GspM: domain 1 of 1, from 1506 to 1520: score 1.0, E = 8.6
                CS    XXXXXXXXXXXXXXX   
                   *->mneLqawWqgrspRE<-*
                      ++ L ++Wq ++p+E   
  gi|9081913  1506    NSYLPQFWQVVPPSE    1520 

//
