# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  ../params/infile_hmm
# target sequence database:        /r_arc70
# output directed to file:         ../results/outfile
# MSA of all hits saved to file:   ../results/outfile_multi_sto
# per-seq hits tabular output:     ../results/tbl
# per-dom hits tabular output:     ../results/domtbl
# sequence reporting threshold:    E-value <= 1
# number of worker threads:        12
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       infile_sto  [M=46]
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.017   20.1   0.6       0.03   19.3   0.6    1.3  1  KYH38259.1      alanine acetyltransferase [Candidatus Bathyar
       0.13   17.3   0.7       0.27   16.3   0.1    1.7  2  WP_054299021.1  ribosomal-protein-alanine N-acetyltransferase
       0.14   17.3   0.1       0.23   16.5   0.1    1.3  1  WP_054584921.1  hypothetical protein [Halolamina pelagica]KP
       0.18   16.9   0.7       0.35   15.9   0.7    1.5  1  WP_052883773.1  hypothetical protein [Thermofilum sp. 1807-2]
       0.39   15.8   0.0    1.3e+02    7.7   0.0    2.5  2  KYK22897.1      hypothetical protein AYK24_08245 [Thermoplasm
       0.41   15.7   0.2         26    9.9   0.0    3.2  3  AIF02201.1      GTPase domain-containing protein [uncultured 
       0.48   15.5   0.7    1.1e+03    4.8   0.1    3.9  4  WP_062399658.1  hypothetical protein [Methanogenium cariaci]
       0.48   15.5   0.0         51    9.0   0.0    2.5  2  KYK32494.1      hypothetical protein AYK19_02995 [Thermoplasm
       0.69   15.0   0.1        9.8   11.3   0.0    2.5  2  KUO39566.1      hypothetical protein APZ16_01915 [Hadesarchae
        0.9   14.6   0.1        1.7   13.7   0.1    1.4  1  OGD45671.1      hypothetical protein A3K79_06915 [Candidatus 


Domain annotation for each sequence (and alignments):
>> KYH38259.1  alanine acetyltransferase [Candidatus Bathyarchaeota archaeon B23]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   19.3   0.6   4.4e-07      0.03       5      27 ..      49      71 ..      47      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.4e-07
  infile_sto  5 aDGeivGfvwGtpgganeGkviG 27
                +DG++vG+v+G+ +ga +G vi 
  KYH38259.1 49 VDGRVVGYVMGEMEGAKVGHVIN 71
                7******************9996 PP

>> WP_054299021.1  ribosomal-protein-alanine N-acetyltransferase RimI [Methanosarcina flavescens]KPL45943.1 ribosomal-p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.3   0.1   3.9e-06      0.27       4      25 ..      44      65 ..      43      71 .. 0.87
   2 ?   -2.3   0.0       2.6   1.8e+05       4       9 ..     132     137 ..     130     139 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.9e-06
      infile_sto  4 eaDGeivGfvwGtpgganeGkv 25
                    e DG++vG+v G+   +neG +
  WP_054299021.1 44 EQDGKVVGYVVGYRSAENEGHI 65
                    78******************76 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
      infile_sto   4 eaDGei 9  
                     ++DG +
  WP_054299021.1 132 GEDGMV 137
                     555554 PP

>> WP_054584921.1  hypothetical protein [Halolamina pelagica]KPN29154.1 hypothetical protein SY89_03388 [Halolamina pel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.5   0.1   3.3e-06      0.23      14      37 ..      14      38 ..      10      42 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.3e-06
      infile_sto 14 wGtpgganeGkviGfevrlEdGs.e 37
                    +G+  +a+ G ++G +vr+EdG+  
  WP_054584921.1 14 EGKHVLAPDGEMVGEVVRTEDGTaF 38
                    799999****************944 PP

>> WP_052883773.1  hypothetical protein [Thermofilum sp. 1807-2]AKG38376.1 hypothetical protein MA03_02555 [Thermofilum
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.7   5.2e-06      0.35      15      43 ..     290     321 ..     279     323 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.2e-06
      infile_sto  15 GtpgganeG..kviGf.evrlEdGsevnasGi 43 
                     G+  g++e+  + iG+ +vrl dG+ev+++Gi
  WP_052883773.1 290 GEVVGEFENsfRSIGYlTVRLADGREVTVGGI 321
                     4444555552245******************9 PP

>> KYK22897.1  hypothetical protein AYK24_08245 [Thermoplasmatales archaeon SG8-52-4]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.01     7e+02      19      37 ..      94     112 ..      90     114 .. 0.88
   2 ?    7.7   0.0     0.002   1.3e+02       5      26 ..     185     206 ..     178     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
  infile_sto  19 ganeGkviGf.evrlEdGse 37 
                  an G viG+ + r+ dG +
  KYK22897.1  94 HANNG-VIGSkSWRFHDGKT 112
                 5999*.***********976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.002
  infile_sto   5 aDGeivGfvwGtpgganeGkvi 26 
                  DG+i+ + w + + ++ +kvi
  KYK22897.1 185 PDGKIISYKWSYHDVKTPNKVI 206
                 6******************998 PP

>> AIF02201.1  GTPase domain-containing protein [uncultured marine group II/III euryarchaeote KM3_155_E06]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.13   8.7e+03       2      15 ..      71      84 ..      70      89 .. 0.86
   2 ?   -2.9   0.0         4   2.7e+05      10      18 ..     295     303 ..     294     310 .. 0.82
   3 ?    9.9   0.0   0.00038        26      11      39 ..     397     423 ..     397     426 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  infile_sto  2 edeaDGeivGfvwG 15
                +de+DG i+  + G
  AIF02201.1 71 DDERDGSICQPNTG 84
                89******998888 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4
  infile_sto  10 vGfvwGtpg 18 
                 + +v+G+p+
  AIF02201.1 295 IAYVPGEPE 303
                 689999976 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00038
  infile_sto  11 GfvwGtpgganeGkviGfevrlEdGsevn 39 
                 Gf ++t  +a  +++iG e +lEdG +v 
  AIF02201.1 397 GFIRAT--DARTNRIIGAEHELEDGAVVK 423
                 677788..8999***************97 PP

>> WP_062399658.1  hypothetical protein [Methanogenium cariaci]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   8.7e+04      31      38 ..      87      94 ..      86      97 .. 0.74
   2 ?    2.1   0.0      0.11   7.4e+03      31      43 ..     125     137 ..     124     139 .. 0.85
   3 ?    3.7   0.0     0.035   2.4e+03      31      45 ..     165     179 ..     164     180 .. 0.83
   4 ?    4.8   0.1     0.016   1.1e+03      31      43 ..     205     217 ..     202     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
      infile_sto 31 rlEdGsev 38
                    ++EdGs++
  WP_062399658.1 87 LTEDGSIF 94
                    57999876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
      infile_sto  31 rlEdGsevnasGi 43 
                     ++E+Gs+v+ +G 
  WP_062399658.1 125 LTENGSIVAWGGW 137
                     68******99985 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.035
      infile_sto  31 rlEdGsevnasGisk 45 
                     ++EdG++v+ +G ++
  WP_062399658.1 165 LTEDGMIVAWGGWDR 179
                     68******9999765 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.016
      infile_sto  31 rlEdGsevnasGi 43 
                     ++EdG++v+ +G 
  WP_062399658.1 205 LTEDGTIVAWGGG 217
                     6899999999986 PP

>> KYK32494.1  hypothetical protein AYK19_02995 [Thermoplasmatales archaeon DG-70-1]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.03     2e+03       8      23 ..      24      39 ..      24      41 .. 0.91
   2 ?    9.0   0.0   0.00075        51      14      39 ..     228     251 ..     225     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.03
  infile_sto  8 eivGfvwGtpgganeG 23
                +i+++  Gt+g+an +
  KYK32494.1 24 RIIDVKTGTAGKANQD 39
                69************97 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00075
  infile_sto  14 wGtpgganeGkviGf.evrlEdGsevn 39 
                 +G+  + +e+ vi + +++ E+G++v+
  KYK32494.1 228 RGK--DTFEK-VIKSiSLLIENGMKVR 251
                 688..45999.**************97 PP

>> KUO39566.1  hypothetical protein APZ16_01915 [Hadesarchaea archaeon YNP_45]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.33   2.2e+04      32      44 ..      36      48 ..      33      50 .. 0.86
   2 ?   11.3   0.0   0.00014       9.8      28      44 ..     163     179 ..     155     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.33
  infile_sto 32 lEdGsevnasGis 44
                 EdG +++a+ ++
  KUO39566.1 36 SEDGPVTAAGAFT 48
                59********998 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
  infile_sto  28 fevrlEdGsevnasGis 44 
                  +++lEdG+ vn++Gi 
  KUO39566.1 163 VQIELEDGTPVNIGGIA 179
                 589************96 PP

>> OGD45671.1  hypothetical protein A3K79_06915 [Candidatus Bathyarchaeota archaeon RBG_13_46_16b]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.6e-05       1.7       4      16 ..      65      77 ..      64      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.6e-05
  infile_sto  4 eaDGeivGfvwGt 16
                eaDGei+G+v+G+
  OGD45671.1 65 EADGEIIGYVQGE 77
                89**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (46 nodes)
Target sequences:                       679520  (173599232 residues searched)
Passed MSV filter:                     26202  (0.0385596); expected 13590.4 (0.02)
Passed bias filter:                    18222  (0.026816); expected 13590.4 (0.02)
Passed Vit filter:                      1432  (0.00210737); expected 679.5 (0.001)
Passed Fwd filter:                        51  (7.5053e-05); expected 6.8 (1e-05)
Initial search space (Z):             679520  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 5.29u 0.50s 00:00:05.79 Elapsed: 00:00:05.83
# Mc/sec: 1369.74
//
# No hits satisfy inclusion thresholds; no alignment saved
[ok]
