# STOCKHOLM 1.0
#=GF ID   HAT
#=GF AC   PF02184.18
#=GF DE   HAT (Half-A-TPR) repeat
#=GF AU   SMART;
#=GF SE   Alignment kindly provided by SMART
#=GF GA   21.00 21.00;
#=GF TC   21.00 21.00;
#=GF NC   20.90 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF CL   CL0020
#=GF RN   [1]
#=GF RM   9478129
#=GF RT   The HAT helix, a repetitive motif implicated in RNA processing. 
#=GF RA   Preker PJ, Keller W; 
#=GF RL   Trends Biochem Sci 1998;23:15-16.
#=GF DR   INTERPRO; IPR003107;
#=GF DR   SMART; HAT;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   The HAT (Half A TPR) repeat is found in several RNA processing
#=GF CC   proteins [1].
#=GF SQ   3
#=GF nondefaultgf   Nondefault GF lines are ignored in io
#=GS CRN_DROME/191-222     AC P17886.2
#=GS CRN_DROME/191-222     nonstandardgs 42
#=GS CLF1_SCHPO/185-216    AC P87312.1
#=GS CLF1_SCHPO/185-216    DR PDB; 3JB9 R; 185-216;
#=GS O16376_CAEEL/201-233  AC O16376.2
CRN_DROME/191-222                KEIDRAREIYERFVYVH.PDVKNWIKFARFEES
#=GR CRN_DROME/191-222     nonstandardgr --------X.XXXXXXXX---------------
CLF1_SCHPO/185-216               HENERARGIYERFVVVH.PEVTNWLRWARFEEE
#=GR CLF1_SCHPO/185-216    SS    --HHHHHHHHHHHHHHS.--HHHHHHHHHHHHH
O16376_CAEEL/201-233             KEIDRARSVYQRFLHVHGINVQNWIKYAKFEER
#=GC SS_cons                     --HHHHHHHHHHHHHHS.--HHHHHHHHHHHHH
#=GC seq_cons                    KEIDRARuIYERFVaVH.P-VpNWIKaARFEEc
#=GC nonstandardgc               --------..........---------------
//
