psLayout version 3

match	mis- 	rep. 	N's	Q gap	Q gap	T gap	T gap	strand	Q        	Q   	Q    	Q  	T        	T   	T    	T  	block	blockSizes 	qStarts	 tStarts
     	match	match	   	count	bases	count	bases	      	name     	size	start	end	name     	size	start	end	count
---------------------------------------------------------------------------------------------------------------------------------------------------------------
16	0	0	0	0	0	0	0	+	hg18_dna	33	11	27	chr4	191154276	61646095	61646111	1	16,	11,	61646095,	aggtaaactgccttca,	aggtaaactgccttca,
33	0	0	0	0	0	0	0	+	hg18_dna	33	0	33	chr1	249250621	10271783	10271816	1	33,	0,	10271783,	atgagcttccaaggtaaactgccttcaagattc,	atgagcttccaaggtaaactgccttcaagattc,
17	0	0	0	0	0	0	0	-	hg18_dna	33	8	25	chr2	243199373	53575980	53575997	1	17,	8,	53575980,	aaggcagtttaccttgg,	aaggcagtttaccttgg,
38	3	0	0	0	0	0	0	+	hg19_dna	50	9	50	chr9	141213431	85737865	85737906	1	41,	9,	85737865,	acaaaggggctgggcgtggtggctcacacctgtaatcccaa,	acaaaggggctgggcgcagtggctcacgcctgtaatcccaa,
41	0	0	0	0	0	0	0	+	hg19_dna	50	8	49	chr8	146364022	95160479	95160520	1	41,	8,	95160479,	cacaaaggggctgggcgtggtggctcacacctgtaatccca,	cacaaaggggctgggcgtggtggctcacacctgtaatccca,
33	3	0	0	0	0	0	0	+	hg19_dna	50	11	47	chr22	51304566	42144400	42144436	1	36,	11,	42144400,	aaaggggctgggcgtggtggctcacacctgtaatcc,	aaaggggctgggcgtggtagctcatgcctgtaatcc,
43	1	0	0	1	4	0	0	+	hg19_dna	50	1	49	chr2	243199373	183925984	183926028	2	6,38,	1,11,	183925984,183925990,	aaaaat,aaaggggctgggcgtggtggctcacacctgtaatccca,	aaaaat,aaaggggctgggcgtggtggctcacgcctgtaatccca,
34	2	0	0	0	0	1	134	+	hg19_dna	50	10	46	chr19	59128983	35483340	35483510	2	25,11,	10,35,	35483340,35483499,	caaaggggctgggcgtggtggctca,cacctgtaatc,	caaaggggctgggcgtagtggctga,cacctgtaatc,
39	0	0	0	0	0	0	0	+	hg19_dna	50	10	49	chr18	78077248	23891310	23891349	1	39,	10,	23891310,	caaaggggctgggcgtggtggctcacacctgtaatccca,	caaaggggctgggcgtggtggctcacacctgtaatccca,
27	1	0	0	0	0	0	0	+	hg19_dna	50	21	49	chr18	78077248	43252217	43252245	1	28,	21,	43252217,	ggcgtggtggctcacacctgtaatccca,	ggcgtggtggctcacgcctgtaatccca,
44	1	0	0	1	3	1	6	+	hg19_dna	50	1	49	chr13	115169878	52759147	52759198	2	7,38,	1,11,	52759147,52759160,	aaaaatt,aaaggggctgggcgtggtggctcacacctgtaatccca,	aaaaatt,aaaggggctgggcgtggtggctcacgcctgtaatccca,
50	0	0	0	0	0	0	0	+	hg19_dna	50	0	50	chr1	249250621	1207056	1207106	1	50,	0,	1207056,	caaaaattcacaaaggggctgggcgtggtggctcacacctgtaatcccaa,	caaaaattcacaaaggggctgggcgtggtggctcacacctgtaatcccaa,
31	3	0	0	0	0	0	0	+	hg19_dna	50	1	35	chr1	249250621	61700837	61700871	1	34,	1,	61700837,	aaaaattcacaaaggggctgggcgtggtggctca,	aaaaatgaacaaaggggctgggcgcggtggctca,
28	0	0	0	1	10	1	6	-	hg19_dna	50	11	49	chr4	191154276	37558157	37558191	2	10,18,	1,21,	37558157,37558173,	tgggattaca,accacgcccagccccttt,	tgggattaca,accacgcccagccccttt,
35	2	0	0	0	0	0	0	-	hg19_dna	50	12	49	chr22	51304566	48997405	48997442	1	37,	1,	48997405,	tgggattacaggtgtgagccaccacgcccagcccctt,	tgggattacaggcgggagccaccacgcccagcccctt,
35	1	0	0	0	0	0	0	-	hg19_dna	50	13	49	chr2	243199373	120641740	120641776	1	36,	1,	120641740,	tgggattacaggtgtgagccaccacgcccagcccct,	tgggattacaggcgtgagccaccacgcccagcccct,
39	0	0	0	0	0	0	0	-	hg19_dna	50	10	49	chr19	59128983	54017130	54017169	1	39,	1,	54017130,	tgggattacaggtgtgagccaccacgcccagcccctttg,	tgggattacaggtgtgagccaccacgcccagcccctttg,
36	3	0	0	0	0	0	0	-	hg19_dna	50	10	49	chr19	59128983	553742	553781	1	39,	1,	553742,	tgggattacaggtgtgagccaccacgcccagcccctttg,	tgggatgacaggggtgaggcaccacgcccagcccctttg,
33	3	0	0	0	0	0	0	-	hg19_dna	50	13	49	chr10	135534747	99388555	99388591	1	36,	1,	99388555,	tgggattacaggtgtgagccaccacgcccagcccct,	tgggattataggcatgagccaccacgcccagcccct,
24	1	0	0	0	0	0	0	-	hg19_dna	50	10	35	chr10	135534747	112178171	112178196	1	25,	15,	112178171,	tgagccaccacgcccagcccctttg,	tgagtcaccacgcccagcccctttg,
35	1	0	0	0	0	0	0	-	hg19_dna	50	13	49	chr1	249250621	39368490	39368526	1	36,	1,	39368490,	tgggattacaggtgtgagccaccacgcccagcccct,	tgggattacaggcgtgagccaccacgcccagcccct,
33	1	0	0	0	0	0	0	-	hg19_dna	50	13	47	chr1	249250621	220325687	220325721	1	34,	3,	220325687,	ggattacaggtgtgagccaccacgcccagcccct,	ggattacaggcgtgagccaccacgcccagcccct,
