# STOCKHOLM 1.0

#=GF AC   RF04178
#=GF ID   BTnc005
#=GF DE   Bacteroides sRNA BTnc005
#=GF AU   Prezza, G
#=GF AU   Ryan, D
#=GF AU   Mädler, G
#=GF AU   Barquist, L; 0000-0003-4732-2667
#=GF AU   Westermann, A
#=GF SE   Published; PMID:32678091;
#=GF SS   Published; PMID:32678091;
#=GF GA   174.80
#=GF TC   179.30
#=GF NC   174.30
#=GF TP   Gene; sRNA; 
#=GF BM   cmbuild -F CM SEED
#=GF CB   cmcalibrate --mpi CM
#=GF SM   cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 742849.287494 CM SEQDB
#=GF DR   SO; 0000655; ncRNA;
#=GF RN   [1]
#=GF RM   32678091
#=GF RT   A high-resolution transcriptome map identifies small RNA regulation of
#=GF RT   metabolism in the gut microbe Bacteroides thetaiotaomicron.
#=GF RA   Ryan D, Jenniches L, Reichardt S, Barquist L, Westermann AJ
#=GF RL   Nat Commun. 2020;11:3557.
#=GF CC   An uncharacterized small RNA discovered in Bacteroides thetaiotaomicron
#=GF CC   [1]
#=GF WK   Bacteroides_thetaiotaomicron_sRNA
#=GF SQ   3


AE015928.1/72774-72978     GUAAGUAAAAGUGUAACAGGAAGAAAGUUGCAGCAUAUAUGCGGUGAAUUAUGCGGUGUCAUAGGAAUUGAGGAUUUAUGUAAGAUGCUGAUAAUGAGUAAGGAACCUUAAAGUUAAUCGUUCCCUGUCUCUCCGCAGAACCUACUGGACAAAACAGGACAGUAAGUGGACAAAAACCUACAAAUCAGC-GAUUUGUAGGUUUUUU
CP000139.1/2819055-2819247 AAAAGUAAGAGUGUAACAGGAAGAAAGUUGCAGCAUAUACGCGGUGAAUUAUUCGGUGUCAUAGGAGUAGAGUCUUUUGGUAAGAUGCUGAUAAUGAGUAGGGGAGAUGAAAGUUAAUCGUUCCCUGUCUCUCCGCUGG---------AAAGAAUUGCAAAACAA--AGA-AAAUCCCUGUAAAUUAAU-ACUUUACGGGGAUUUU
FP929033.1/4930704-4930908 GUAAGUAAAAGUGUAACAGGAAGAAAGUUGCAGCAUAUAUGCGGUGAAUUAUGCGGUGUCAUAGGAAUUGAGGAUUUAUGUAAGAUGCUGAUAAUGAGUAAGGAACCUUAAAGUUAAUCGUUCCCUGUCUCUCCGCUGAACUAUCCGGACAAAACCGGGCAAUGAACAGUCAAA-UCCCACAAAUUCAAUGAUUUGUGGGACUUUU
#=GC SS_cons               :::::::::::<<<<<<_________>>>>>>,,,,,,,,((((,,,<<<<<-<<<<<<<----<<<_______>>>------>>>>>>>>>>>><<<<<-<<<<_______________>>>>->>->>>,))))---------------------------------------<<<<<<<<<<<____>>>>>>>>>>>:::::
#=GC RF                    guAAGUAAaAGuGuaaCAGGAAGAAAGuugCaGCAUAUAuGCGGUGAauuaugCgGuguCAUAGgaaUuGAGgauuuauGUAAGaugCuGauaauGaGuaaGGaaccUuAAAGUUAAUCGuuCCCugUCuCUCCGCuGaACuaaCuGGAcAaAAcuGgacAauaAauaGaCAAAacCCcgcaaaucaau.gauuugcgGGguUUUU
//
