BLASTN 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|1347201|gb|G24969|G24969 human STS
EST21946.gi|1375315|gb|G27065|G27065 human STS SHGC-31731.
         (331 letters)

Database: data/sts
           87,792 sequences; 31,998,854 total letters

Searching...................................................done

>gi|1347201|gb|G24969|G24969 human STS EST21946.
           >gi|1375315|gb|G27065|G27065 human STS SHGC-31731.
           Length = 331
           
 Score =  656 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccaccctctcatgagcaacaggatatgtgaaagtacttgcagccagaagcaaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cctccaccctctcatgagcaacaggatatgtgaaagtacttgcagccagaagcaaaacca 60

                                                                       
Query: 61  caatcctcgggtgctagatggagctccccaaggagcagagaggaaaaggcaggaggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caatcctcgggtgctagatggagctccccaaggagcagagaggaaaaggcaggaggagag 120

                                                                       
Query: 121 ggccaggcagcagggatggagactaagtttggcccaaggctgcccgcaagcactgatgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggccaggcagcagggatggagactaagtttggcccaaggctgcccgcaagcactgatgcc 180

                                                                       
Query: 181 atcatgccctctggtaggtgtctatttctgtctgaaccagaaatacaccaagctccacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcatgccctctggtaggtgtctatttctgtctgaaccagaaatacaccaagctccacac 240

                                                                       
Query: 241 atgggggctttgctggcttcgacatcactggttcaactatgtcactgctttgttatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgggggctttgctggcttcgacatcactggttcaactatgtcactgctttgttatattt 300

                                          
Query: 301 agtgctccagaacctcaggttccttcagatt 331
           |||||||||||||||||||||||||||||||
Sbjct: 301 agtgctccagaacctcaggttccttcagatt 331


>gi|2665277|emb|AL010115|HSPE77H4 H.sapiens flow-sorted chromosome 1
           HindIII fragment, SC1pE77H4, sequence tagged site [Homo
           sapiens]
           Length = 554
           
 Score = 34.2 bits (17), Expect = 0.49
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 123 ccaggcagcagggatgg 139
           |||||||||||||||||
Sbjct: 434 ccaggcagcagggatgg 418


>gi|4757440|gb|G49267.1|G49267 stbK343C1_96809 chromosome 22 genomic
           clone Homo sapiens STS genomic clone 343C1, sequence
           tagged site
           Length = 360
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                   
Query: 112 ggaggagagggccaggcagcaggg 135
           ||||||||||| | ||||||||||
Sbjct: 287 ggaggagaggggctggcagcaggg 264


>gi|4493602|gb|G47248.1|G47248 Z17392_1 Zebrafish AB Danio rerio STS
           genomic clone Z17392 5', sequence tagged site
           Length = 454
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 48  agaagcaaaaccacaa 63
           ||||||||||||||||
Sbjct: 434 agaagcaaaaccacaa 449


>gi|6120731|gb|G55412.1|G55412 SHGC-100745 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 652
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 99  agaggaaaaggcagga 114
           ||||||||||||||||
Sbjct: 431 agaggaaaaggcagga 416


>gi|1235411|emb|Z53965|HSC009WH1 H.sapiens (D2S2321) DNA segment
           containing (CA) repeat; clone AFMc009wh1; single read,
           sequence tagged site [Homo sapiens]
           Length = 382
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 97  agagaggaaaaggcag 112
           ||||||||||||||||
Sbjct: 107 agagaggaaaaggcag 122


>gi|939357|gb|G08807|G08807 human STS CHLC.GATA70E11.P18111 clone
           GATA70E11
           Length = 643
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 100 gaggaaaaggcaggag 115
           ||||||||||||||||
Sbjct: 482 gaggaaaaggcaggag 467


>gi|1342139|gb|G21813|G21813 human STS WI-12408.
           Length = 418
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 47  cagaagcaaaaccaca 62
           ||||||||||||||||
Sbjct: 193 cagaagcaaaaccaca 178


>gi|719782|gb|G02824|G02824 human STS WI-1312.
           Length = 349
           
 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 286 tgctttgttatattta 301
           ||||||||||||||||
Sbjct: 111 tgctttgttatattta 126


>gi|5902652|gb|G54536.1|G54536 Xq4072 KWOK Homo sapiens STS genomic,
           sequence tagged site
           Length = 997
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 1   cctccaccctctcat 15
           |||||||||||||||
Sbjct: 618 cctccaccctctcat 604


>gi|5566455|gb|AF167528.1|AF167528 Mus musculus chromosome 10 STS
           D10Jhu41, sequence tagged site
           Length = 749
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 117 agagggccaggcagc 131
           |||||||||||||||
Sbjct: 487 agagggccaggcagc 501


>gi|5566418|gb|AF167504.1|AF167504 Mus musculus chromosome 10 STS
           D10Jhu59, sequence tagged site
           Length = 550
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 81  gagctccccaaggag 95
           |||||||||||||||
Sbjct: 278 gagctccccaaggag 264


>gi|5565757|gb|AF096569.1|AF096569 Rattus norvegicus clone D5Uwm59,
           sequence tagged site
           Length = 580
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 95  gcagagaggaaaaggcaggagga 117
           ||||| |||| ||||||||||||
Sbjct: 84  gcagacaggagaaggcaggagga 106


>gi|4757436|gb|G49263.1|G49263 stbK343C1_70109 chromosome 22 genomic
           clone Homo sapiens STS genomic clone 343C1, sequence
           tagged site
           Length = 359
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 125 aggcagcagggatgg 139
           |||||||||||||||
Sbjct: 58  aggcagcagggatgg 44


>gi|4518571|dbj|AU028648.1|AU028648 Rattus norvegicus, OTSUKA clone,
           OT10.41/02694, microsatellite sequence, sequence tagged
           site
           Length = 465
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 184 atgccctctggtagg 198
           |||||||||||||||
Sbjct: 114 atgccctctggtagg 100


>gi|6123014|gb|G57845.1|G57845 SHGC-103599 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 680
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 134 ggatggagactaagt 148
           |||||||||||||||
Sbjct: 451 ggatggagactaagt 465


>gi|6124406|gb|G59237.1|G59237 SHGC-110189 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 505
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 128 cagcagggatggaga 142
           |||||||||||||||
Sbjct: 163 cagcagggatggaga 149


>gi|6121931|gb|G56612.1|G56612 SHGC-102181 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 489
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 137 tggagactaagtttggccc 155
           ||||||||||||| |||||
Sbjct: 302 tggagactaagttgggccc 320


>gi|3599905|gb|G41846|G41846 Z1061 Zebrafish AB Danio rerio STS
           genomic, sequence tagged site [Danio rerio]
           Length = 410
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 265 tcactggttcaacta 279
           |||||||||||||||
Sbjct: 185 tcactggttcaacta 199


>gi|5224504|gb|G53327.1|G53327 SHGC-82321 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 421
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 90  aaggagcagagaggaaaag 108
           |||||| ||||||||||||
Sbjct: 209 aaggagaagagaggaaaag 227


>gi|5221389|gb|G50212.1|G50212 SHGC-82917 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 297
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 116 gagagggccaggcag 130
           |||||||||||||||
Sbjct: 155 gagagggccaggcag 169


>gi|3168757|gb|G38183|G38183 RPCI-6-164E4Sp6 Human Homo sapiens STS
           genomic
           Length = 395
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 42  gcagccagaagcaaa 56
           |||||||||||||||
Sbjct: 259 gcagccagaagcaaa 273


>gi|3150191|emb|AL023622|HS863J11T H.sapiens STS from genomic clone
           863J11, sequence tagged site [Homo sapiens]
           Length = 558
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 199 tgtctatttctgtct 213
           |||||||||||||||
Sbjct: 155 tgtctatttctgtct 169


>gi|3123402|emb|AL023351|DM171A7S Drosophila melanogaster STS
           determined from European Mapping Project cosmid,
           sequence tagged site [Drosophila melanogaster]
           Length = 600
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 225 acaccaagctccaca 239
           |||||||||||||||
Sbjct: 163 acaccaagctccaca 177


>gi|2665031|emb|AL009868|HSPE36B05 H.sapiens flow-sorted chromosome
           1 HindIII fragment, SC1pE36B05, sequence tagged site
           [Homo sapiens]
           Length = 397
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 199 tgtctatttctgtct 213
           |||||||||||||||
Sbjct: 244 tgtctatttctgtct 258


>gi|2641969|dbj|AB004264|AB004264 Mus spretus genomic DNA, RLGS
           spot, D5Rik122, sequence tagged site [Mus spretus]
           Length = 237
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 115 ggagagggccaggca 129
           |||||||||||||||
Sbjct: 53  ggagagggccaggca 39


>gi|4529138|gb|G48478.1|G48478 SHGC-68947 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 415
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 262 acatcactggttcaa 276
           |||||||||||||||
Sbjct: 331 acatcactggttcaa 345


>gi|2484048|gb|G36284|G36284   STS h14a2375 5
           Length = 305
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 121 ggccaggcagcaggg 135
           |||||||||||||||
Sbjct: 108 ggccaggcagcaggg 122


>gi|1871265|gb|G31295|G31295 sy625c11-R Human (A.Gnirke) Homo
           sapiens STS genomic, sequence tagged site [Homo sapiens]
           Length = 279
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 298 tttagtgctccagaa 312
           |||||||||||||||
Sbjct: 261 tttagtgctccagaa 275


>gi|1263801|emb|Z70926|DM63D12T D. melanogaster STS determined from
           European Mapping Project cosmid, sequence tagged site
           [Drosophila melanogaster]
           Length = 350
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 316 caggttccttcagat 330
           |||||||||||||||
Sbjct: 323 caggttccttcagat 309


>gi|1244248|gb|G19461|G19461 human STS SHGC-11979.
           Length = 400
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 43  cagccagaagcaaaa 57
           |||||||||||||||
Sbjct: 356 cagccagaagcaaaa 342


>gi|1233253|emb|Z51953|HSA084XF1 H.sapiens (D19S932) DNA segment
           containing (CA) repeat; clone AFMa084xf1; single read,
           sequence tagged site [Homo sapiens]
           Length = 276
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 311 aacctcaggttcctt 325
           |||||||||||||||
Sbjct: 54  aacctcaggttcctt 40


>gi|1233152|emb|Z51852|HSA070WH1 H.sapiens (D9S1879) DNA segment
          containing (CA) repeat; clone AFMa070wh1; single read,
          sequence tagged site [Homo sapiens]
          Length = 363
          
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 1  cctccaccctctcat 15
          |||||||||||||||
Sbjct: 59 cctccaccctctcat 73


>gi|1215106|gb|G17680|G17680 human STS SHGC-3112 clone pG-956.
           Length = 313
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 86  ccccaaggagcagagagga 104
           |||| ||||||||||||||
Sbjct: 213 ccccgaggagcagagagga 195


>gi|1594113|gb|G30562|G30562 human STS SHGC-37420
           Length = 447
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 112 ggaggagagggccaggcag 130
           ||||||| |||||||||||
Sbjct: 234 ggaggagggggccaggcag 252


>gi|1593022|gb|G29471|G29471 human STS SHGC-33749
           Length = 437
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 123 ccaggcagcagggat 137
           |||||||||||||||
Sbjct: 320 ccaggcagcagggat 306


>gi|1052040|emb|Z67257|HSA090WF9 H.sapiens DNA segment containing
           (CA) repeat; clone AFMa090wf9; single read, sequence
           tagged site [Homo sapiens]
           Length = 312
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 194 gtaggtgtctatttc 208
           |||||||||||||||
Sbjct: 201 gtaggtgtctatttc 215


>gi|881858|gb|G07651|G07651 human STS SHGC-5830 clone pG-2175.
           Length = 336
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 121 ggccaggcagcaggg 135
           |||||||||||||||
Sbjct: 86  ggccaggcagcaggg 100


>gi|1344417|gb|G24091|G24091 human STS WI-12544.
           Length = 452
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 104 aaaaggcaggaggagaggg 122
           |||||||||||| ||||||
Sbjct: 234 aaaaggcaggagaagaggg 216


>gi|860391|gb|G07146|G07146 human STS WI-9143.
           Length = 1946
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 280 tgtcactgctttgtt 294
           |||||||||||||||
Sbjct: 492 tgtcactgctttgtt 478


>gi|858959|gb|G05714|G05714 human STS WI-8961.
           Length = 1337
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 237 acacatgggggcttt 251
           |||||||||||||||
Sbjct: 117 acacatgggggcttt 131


>gi|1341506|gb|G21180|G21180 human STS WI-14638.
           Length = 375
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 288 ctttgttatatttag 302
           |||||||||||||||
Sbjct: 74  ctttgttatatttag 60


>gi|1341551|gb|G21225|G21225 human STS WI-11777.
           Length = 348
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 91  aggagcagagaggaa 105
           |||||||||||||||
Sbjct: 216 aggagcagagaggaa 230


>gi|465219|gb|L29850|HUMUT50 Human STS UT50.
           Length = 382
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 125 aggcagcagggatgg 139
           |||||||||||||||
Sbjct: 273 aggcagcagggatgg 259


>gi|860599|gb|G07354|G07354 human STS WI-9600.
           Length = 226
           
 Score = 30.2 bits (15), Expect = 7.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 114 aggagagggccaggc 128
           |||||||||||||||
Sbjct: 124 aggagagggccaggc 138


  Database: data/sts
    Posted date:  Feb 11, 2000  2:37 PM
  Number of letters in database: 31,998,854
  Number of sequences in database:  87,792
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6844
Number of Sequences: 87792
Number of extensions: 6844
Number of successful extensions: 1887
Number of sequences better than 10.0: 51
length of query: 331
length of database: 31,998,854
effective HSP length: 17
effective length of query: 314
effective length of database: 30,506,390
effective search space: 9579006460
effective search space used: 9579006460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
