BLASTP 2.2.26+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: NCBI Protein Reference Sequences
           11,879,989 sequences; 4,140,237,112 total letters



Query= gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus
subtilis subsp. subtilis str. 168]

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ref|NP_391444.1|  membrane bound lipoprotein [Bacillus subtilis s...   205    1e-66
ref|YP_003922001.1|  membrane bound lipoprotein [Bacillus amyloli...   139    1e-40
ref|YP_005132038.1|  lytA gene product [Bacillus amyloliquefacien...  89.0    4e-21
ref|YP_001422840.1|  LytA [Bacillus amyloliquefaciens FZB42]          89.0    5e-21
ref|YP_003974994.1|  unnamed protein product [Bacillus atrophaeus...  83.2    9e-19
ref|ZP_06872708.1|  hypothetical protein BSU6633_03962 [Bacillus ...  78.2    9e-17
ref|YP_003973943.1|  unnamed protein product [Bacillus atrophaeus...  69.7    1e-13
ref|YP_001488429.1|  lipoprotein [Bacillus pumilus SAFR-032]          65.5    5e-12
ref|ZP_03053924.1|  LytA [Bacillus pumilus ATCC 7061]                 65.1    7e-12
ref|YP_004879120.1|  membrane-bound protein LytA [Bacillus subtil...  64.3    1e-11
ref|YP_079743.1|  hypothetical protein BL01515 [Bacillus lichenif...  63.5    3e-11
ref|ZP_07999323.1|  YqiH protein [Bacillus sp. BT1B_CT2]              63.9    3e-11
ref|NP_390300.2|  lipoprotein [Bacillus subtilis subsp. subtilis ...  58.9    1e-09
ref|YP_004877911.1|  hypothetical protein GYO_2666 [Bacillus subt...  58.2    2e-09
ref|YP_004204188.1|  unnamed protein product [Bacillus subtilis B...  57.0    7e-09
ref|ZP_03592187.1|  hypothetical protein Bsubs1_13266 [Bacillus s...  57.0    8e-09
ref|ZP_08002186.1|  hypothetical protein HMPREF1012_03225 [Bacill...  53.1    2e-07
ref|YP_080891.1|  membrane bound lipoprotein [Bacillus lichenifor...  52.8    2e-07
ref|YP_003974991.1|  unnamed protein product [Bacillus atrophaeus...  52.0    5e-07
ref|YP_001421840.1|  hypothetical protein RBAM_022480 [Bacillus a...  49.3    3e-06


>ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis 
str. 168]
 ref|ZP_03593363.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis 
str. 168]
 ref|ZP_03597648.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis 
str. NCIB 3610]
 ref|ZP_03602051.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis 
str. JH642]
 ref|ZP_03606337.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis 
str. SMY]
 ref|YP_004205398.1| unnamed protein product [Bacillus subtilis BSn5]
Length=102

 Score =  205 bits (521),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  1    MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV  60
            MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV
Sbjct  1    MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV  60

Query  61   SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN  102
            SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN
Sbjct  61   SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN  102


>ref|YP_003922001.1| membrane bound lipoprotein [Bacillus amyloliquefaciens DSM 7]
Length=100

 Score =  139 bits (350),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 69/102 (68%), Positives = 81/102 (79%), Gaps = 2/102 (2%)

Query  1    MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV  60
            MKK    LFFILLL+GCGV ++KSQGED      + TKEGTYVGLADTHTIEVTVD+EPV
Sbjct  1    MKKIFGCLFFILLLAGCGVTNEKSQGEDAG--EKLVTKEGTYVGLADTHTIEVTVDHEPV  58

Query  61   SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN  102
            S DITEES  D+   N+G+KVT+ Y+KN +GQL+LKDIE AN
Sbjct  59   SFDITEESADDVKNLNNGEKVTVKYQKNSKGQLVLKDIEPAN  100


>ref|YP_005132038.1| lytA gene product [Bacillus amyloliquefaciens CAU-B946]
Length=105

 Score = 89.0 bits (219),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 48/105 (46%), Positives = 69/105 (66%), Gaps = 5/105 (5%)

Query  1    MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD  56
            MKK IA  F ILL    L+ CG   Q  +G   S ++  + +   YVG+ADTHTIEV VD
Sbjct  1    MKKTIAASFLILLFSVVLAACGTAEQSKKGSG-SSENQAQKETAYYVGMADTHTIEVKVD  59

Query  57   NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA  101
            ++PVS + +++ +  L+KF+  DKV+ITY  ND+GQ  +K+IE+A
Sbjct  60   DQPVSFEFSDDFSDVLNKFSENDKVSITYFTNDKGQKEIKEIEKA  104


>ref|YP_001422840.1| LytA [Bacillus amyloliquefaciens FZB42]
Length=105

 Score = 89.0 bits (219),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 48/105 (46%), Positives = 69/105 (66%), Gaps = 5/105 (5%)

Query  1    MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD  56
            MKK IA  F ILL    L+ CG   Q  +G   S ++  + +   YVG+ADTHTIEV VD
Sbjct  1    MKKTIAASFLILLFSVVLAACGTADQSKKGSG-SSENQAQKETAYYVGMADTHTIEVKVD  59

Query  57   NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA  101
            ++PVS + +++ +  L+KF+  DKV+ITY  ND+GQ  +K+IE+A
Sbjct  60   DQPVSFEFSDDFSDVLNKFSENDKVSITYFTNDKGQKEIKEIEKA  104


>ref|YP_003974994.1| unnamed protein product [Bacillus atrophaeus 1942]
Length=105

 Score = 83.2 bits (204),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 5/104 (5%)

Query  1    MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD  56
            MKK +A  F ILL    L+ CG   Q  +G + S  S ++ +   YVG+ADTHTIEV +D
Sbjct  1    MKKNVASSFLILLFSIILAACGTAEQSKEG-NGSSSSQVQNETAYYVGMADTHTIEVKID  59

Query  57   NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIER  100
            ++PVS + T++ +  L++F   DKV I+Y  ND+GQ  L +IE+
Sbjct  60   DQPVSFEFTDDFSEILNEFEENDKVNISYLTNDKGQKELTEIEK  103


>ref|ZP_06872708.1| hypothetical protein BSU6633_03962 [Bacillus subtilis subsp. 
spizizenii ATCC 6633]
 ref|YP_003867840.1| lytA gene product [Bacillus subtilis subsp. spizizenii str. W23]
Length=107

 Score = 78.2 bits (191),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 45/105 (43%), Positives = 62/105 (59%), Gaps = 6/105 (6%)

Query  1    MKKFIALLF-FILLLSGCGV--NSQKSQGEDVSPDSNIE---TKEGTYVGLADTHTIEVT  54
            MKKF  L F  +LLLS CG   NS  S+    S D+  E   TKEGT+ GLAD+HTI VT
Sbjct  1    MKKFAILTFSMLLLLSACGTAENSSGSETNSGSQDAAAEETVTKEGTFAGLADSHTIAVT  60

Query  55   VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE  99
            +D +  S+ +  +    ++  + G KV + Y K+  G L+LKD+E
Sbjct  61   IDGKETSIQVGSDLQDKMNNISEGQKVVVKYTKDSNGVLMLKDLE  105


>ref|YP_003973943.1| unnamed protein product [Bacillus atrophaeus 1942]
Length=100

 Score = 69.7 bits (169),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (59%), Gaps = 4/99 (4%)

Query  1   MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV  60
           M++ + LLF +L+L+GCG  +  +Q  D SP     T+EG Y+G AD HTI V +D E  
Sbjct  1   MRQTVLLLFGVLMLAGCGAAASANQA-DSSPKF---TQEGKYIGAADRHTIAVNIDGEEK  56

Query  61  SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE  99
            +++ +   ++ +      KV + Y K+D G L L+DI+
Sbjct  57  MIEVPKNKRAECESLPDYTKVQVKYTKDDNGTLKLEDIK  95


>ref|YP_001488429.1| lipoprotein [Bacillus pumilus SAFR-032]
Length=107

 Score = 65.5 bits (158),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 63/107 (59%), Gaps = 7/107 (7%)

Query  1    MKKFIALLFFILLL----SGCGVNSQKSQGEDVSPDSNIETKE--GTYVGLADTHTIEVT  54
            MKK + L F ILLL    + CG  +++S GE+ +  S  +  E    ++G+AD HT+EV 
Sbjct  1    MKKIVVLPFLILLLGIVLTACG-TAEQSSGENKTSSSTPQVLEEKAEFIGMADAHTVEVK  59

Query  55   VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA  101
              N  ++ + T+     L++FN GDKV I+Y  ND GQ  +++I++ 
Sbjct  60   KVNTTLNYEFTDNFKDVLNEFNPGDKVEISYFINDSGQKEIQEIKKV  106


>ref|ZP_03053924.1| LytA [Bacillus pumilus ATCC 7061]
Length=107

 Score = 65.1 bits (157),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 40/106 (38%), Positives = 61/106 (58%), Gaps = 7/106 (7%)

Query  1    MKKFIALLFFILLL----SGCGVNSQKSQGEDVSPDSNIETKE--GTYVGLADTHTIEVT  54
            MKK + L F ILLL    + CG  +++S GE+ +  S  +  E    ++G+AD HT+EV 
Sbjct  1    MKKIVVLPFLILLLGIVLTACG-TAEQSSGENNTSSSTPQVLEEKAEFIGMADAHTVEVK  59

Query  55   VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIER  100
              N  +S + T+     L++F  GDKV I+Y  ND GQ  ++ IE+
Sbjct  60   KVNTTLSYEFTDNFKDVLNEFKPGDKVEISYFINDSGQKEIQKIEK  105


>ref|YP_004879120.1| membrane-bound protein LytA [Bacillus subtilis subsp. spizizenii 
TU-B-10]
Length=107

 Score = 64.3 bits (155),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 44/105 (42%), Positives = 62/105 (59%), Gaps = 6/105 (6%)

Query  1    MKKF-IALLFFILLLSGCGV--NSQKSQGEDVSPDSNIE---TKEGTYVGLADTHTIEVT  54
            MKKF I +   +LLLS CG   NS  S+    S D+  E   TKEGT+ GLAD+HTI VT
Sbjct  1    MKKFAILMFSMLLLLSACGTTENSSGSETNSGSQDAAAEETVTKEGTFAGLADSHTIAVT  60

Query  55   VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE  99
            +D +  S+ +  +    ++  + G KV + Y K+  G L+LKD+E
Sbjct  61   IDGKETSIQVGSDLQDKMNSISEGQKVVVKYTKDANGVLMLKDLE  105



Lambda     K      H
   0.310    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 102199494683


  Database: NCBI Protein Reference Sequences
    Posted date:  Mar 18, 2012  8:41 PM
  Number of letters in database: 4,140,237,112
  Number of sequences in database:  11,879,989



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
