BLASTX 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|1347369|gb|G25137|G25137 human STS EST48004.
         (556 letters)

Database: data/swissprot
           82,258 sequences; 29,652,561 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1731448|sp|P54103|ZRF1_MOUSE ZUOTIN RELATED FACTOR-1               87  3e-17
gi|465911|sp|P34454|YMA9_CAEEL HYPOTHETICAL 31.6 KD PROTEIN F54...    42  0.001
gi|2494160|sp|Q61712|MTJ1_MOUSE DNAJ PROTEIN HOMOLOG MTJ1             37  0.033
gi|1730688|sp|P53745|YN8X_YEAST HYPOTHETICAL 68.1 KD PROTEIN IN...    29  7.4

>gi|1731448|sp|P54103|ZRF1_MOUSE ZUOTIN RELATED FACTOR-1
           Length = 514
           
 Score = 86.6 bits (211), Expect = 3e-17
 Identities = 41/47 (87%), Positives = 44/47 (93%)
 Frame = +1

Query: 1   DLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAK 141
           DLQLLIKAVNLFPAG NSRW+VIANYMNIHSSSGVKRTAKDVI + +
Sbjct: 458 DLQLLIKAVNLFPAGRNSRWDVIANYMNIHSSSGVKRTAKDVISEVR 504


>gi|465911|sp|P34454|YMA9_CAEEL HYPOTHETICAL 31.6 KD PROTEIN F54F2.9
           IN CHROMOSOME III
           Length = 275
           
 Score = 41.8 bits (96), Expect = 0.001
 Identities = 30/122 (24%), Positives = 54/122 (43%)
 Frame = +1

Query: 34  FPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKE 213
           +PAGT +RWE +   +N        R+A+DVI  A  ++++   +++D  K      ++ 
Sbjct: 159 YPAGTPNRWEQMGRVLN--------RSAEDVIAMAGKMKQM---KQEDYTKLLMTTIQQS 207

Query: 214 HGVVPQADNATPSERFXGPYTDFTPXTTEXQKLXEQALNTYPVNTXERWXXIAVAVPGRX 393
             V  ++++                 +   QK  E AL  YP  T ERW  I+  +  + 
Sbjct: 208 VPVEEKSED---------------DWSQAEQKAFETALQKYPKGTDERWERISEEIGSKT 252

Query: 394 KE 399
           K+
Sbjct: 253 KK 254


>gi|2494160|sp|Q61712|MTJ1_MOUSE DNAJ PROTEIN HOMOLOG MTJ1
           Length = 552
           
 Score = 36.7 bits (83), Expect = 0.033
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +1

Query: 292 TTEXQKLXEQALNTYPVNTXERWXXIAVAVPGRXKE 399
           T   QKL E AL  YP    +RW  IA  VP + KE
Sbjct: 496 TQSQQKLLELALQQYPKGASDRWDKIAKCVPSKSKE 531


 Score = 31.3 bits (69), Expect = 1.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 1   DLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQ 150
           DL  L +++  FP GT  RW+ IA+ +         R+  DV  KAK L+
Sbjct: 332 DLSQLTRSMVKFPGGTPGRWDKIAHELG--------RSVTDVTTKAKELK 373


>gi|1730688|sp|P53745|YN8X_YEAST HYPOTHETICAL 68.1 KD PROTEIN IN
           BIO3-FRE4 INTERGENIC REGION
           Length = 580
           
 Score = 29.0 bits (63), Expect = 7.4
 Identities = 27/99 (27%), Positives = 41/99 (41%)
 Frame = +1

Query: 52  SRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKEHGVVPQ 231
           +RW+   +Y        V R+ KDV   ++SL  LD +QK     +A       H +   
Sbjct: 75  NRWKSFISY--------VTRSRKDVKTVSRSLSNLDLYQKCSKEIRADQDISLLHSI--- 123

Query: 232 ADNATPSERFXGPYTDFTPXTTEXQKLXEQALNTYPVNT 348
                  E    PY +FT   +      EQ+ N +PV+T
Sbjct: 124 -------ETKLFPYINFTALNS------EQSHNFWPVHT 149


  Database: data/swissprot
    Posted date:  Feb 2, 2000  9:39 AM
  Number of letters in database: 29,652,561
  Number of sequences in database:  82,258
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23174157
Number of Sequences: 82258
Number of extensions: 387821
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 29,652,561
effective HSP length: 49
effective length of query: 135
effective length of database: 25,621,919
effective search space: 3458959065
effective search space used: 3458959065
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 62 (28.6 bits)
