BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: subject.fasta
           1 sequences; 1,853 total letters



Query= TR11080zzzc0_g2_i2_0

Length=1691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabdi...   1901   0.0  


> gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis 
remanei]
Length=1853

 Score =  1901 bits (4924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 975/1817 (54%), Positives = 1275/1817 (70%), Gaps = 149/1817 (8%)

Query  11    VKEVSYLQFGVLSPDEMKEMSVCKIEFPQTYENGVPKEGGLSDPRLGTMDRTQLCRTCNS  70
             ++ V  +QFG+L P+E+K MSV  +EFP+ YENG PK GGL DPR G +DR   C TC  
Sbjct  12    LRTVCRVQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVIDRRGRCMTCAG  71

Query  71    DARECPGHFGHIVLAKPMYHVGFLPFVLKILRCVCFFCSKLLVDSNDPRLKSILAQ--NH  128
             +  +CPGHF H+ LAKP++H+GFL   LKILRCVCF+C +LL+D ++PR+  IL +   +
Sbjct  72    NLTDCPGHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVIDILKKTSGN  131

Query  129   HRRRIQSMMNLCRTKKICE-AGDDADDLAEHETEP-EKQRKPHGGCGNFQPNITKDGLRL  186
              ++R+  + +LC++K +CE A +  + L +   +P   ++K   GCG +QP+  + G+ +
Sbjct  132   AKKRLALIYDLCKSKSVCEGAAEKEEGLPDDVDDPMSGEKKIPAGCGRYQPSYRRVGIDI  191

Query  187   LAEFK-HVSDESIEKKQVLSAEKVYEILKKITDEDCRMMGLDPKFARPDWMVLTIFPVPP  245
              AE+K +V++++ E+K +L+AE+V E+ K+ITDED  ++G+DP+FARP+WM+ T+ PVPP
Sbjct  192   NAEWKKNVNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPP  251

Query  246   PPVRPSILMDSSSRGEDDLTCKLADIIKSNHALRQQELSGSPAHIITEFTQILQYHVATY  305
               VRP+++   S++ +DDLT KL+DIIK+N  L++ E +G+ AH++T+  ++LQYHVAT 
Sbjct  252   LAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATL  311

Query  306   LDNELPGLPPAIQRSGRPLKSIRQRLRGKNGRVRGNLMGKRVDFSARTVITPDANIGIDE  365
             +DN +PGLP A Q+ GRPLKSI+QRL+GK GR+RGNLMGKRVDFSARTVIT D N+ ID 
Sbjct  312   VDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDT  371

Query  366   VGVPRSIALNLTFPDIVTPLNIDRMYEYVRNGPREYPGAKYIVRDDGSRLDLRYIRKPSD  425
             VGVPR+IA NLTFP+IVTP N+D++ E V  G  +YPGAKYI+R++G+R+DLRY  + +D
Sbjct  372   VGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAAD  431

Query  426   LHLDYGYKVERHLRDGDFVLFNRQPSLHKMSIMAHRVKLLPFSTFRLNLSVTSPYNADFD  485
             LHL  GY+VERH++DGD ++FNRQP+LHKMS+M HRVK+LP+STFR+NLSVTSPYNADFD
Sbjct  432   LHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFD  491

Query  486   GDEMNLHVPQSLEAIAEAQELMLVPRQIISPQANKPVIGLVQDVLIGARNMTKRDTFIEL  545
             GDEMNLH+PQSLE  AE +E+ +VPRQ+I+PQANKPV+G+VQD L   R MTKRD FI+ 
Sbjct  492   GDEMNLHLPQSLETRAEIEEICMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDW  551

Query  546   DTVMNILMCTENFDGRIPMPAILKPKKLWTGKQLFSLILP-NVNLIRFTSTHPDGE----  600
               +M++LM    +DG++P PAILKPK LWTGKQLFSLI+P NVN++R  STHPD E    
Sbjct  552   SFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQLFSLIIPGNVNVLRTHSTHPDSEDSGP  611

Query  601   YTHISPGDTKVLIENGDLISGILCKRTLGTSGGSLIHIICNEHGHDTARLFLNQAQKVVN  660
             Y  ISPGDTKVLIE+G+L+SGI+C +T+G S G+L+H++  E G++ A  F +  Q V+N
Sbjct  612   YKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN  671

Query  661   NWLVNIGFSIGIGDTIADEATMEQINKTIASAKNQVKELVLQAQQNILECQPGRTLHESF  720
              WL+ +G +IGIGDTIAD AT   I  TI  AK  V +++ +A  + LE  PG TL ++F
Sbjct  672   AWLLRVGHTIGIGDTIADHATYLDIQNTIKKAKQDVVDIIEKAHNDDLEPTPGNTLRQTF  731

Query  721   ENKVNKVLNTARDTAGTSAQNSLKESNNVKSMVTAGSKGSFINISQMIACVGQQNVEGKR  780
             ENKVN++LN ARD  G+SAQ SL E NN KSMV +GSKGS INISQ+IACVGQQNVEGKR
Sbjct  732   ENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKR  791

Query  781   IPYGFGHRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET  840
             IP+GF HRTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ET
Sbjct  792   IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET  851

Query  841   GYIQRRLVKAMEDLMVRYDGTVRNSLGCIIQFSYGEDGMDGAFVESQKLEILRLGDKAFQ  900
             GYIQRRL+KAME +MV YDGTVRNSL  ++Q  YGEDG+DG +VE Q +  ++  +  F+
Sbjct  852   GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFE  911

Query  901   TLYFMDPTKANFGEDFLDQEVVEDVRNSSEAYELLSAEYEELKRCRRVLRQEVIPSGDDT  960
               + MD T   F      ++VV +++ S +   L+ +E+ +L+  RR+LR+ + P GD  
Sbjct  912   RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK-IFPRGDAK  970

Query  961   WPLPVNLRRLIWNAQVIFRLDTRKSTDLSPVKIIKGVKTLLSRLIVVKGDDEVSLEAQES  1020
               LP NL+RLIWNAQ IF++D RK  +LSP+ +I GV+ L  +LI+V G+DE+S +AQ +
Sbjct  971   IVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYN  1030

Query  1021  CTMLFGILLKSTLASKRVLKEFRLNTVAFDWVLGEIESRFMQAIVQPSEAVGAIAAQSIG  1080
              T+L  ILL+STL +K++    +LNT AFDW+LGE+ESRF QAI QP E VGA+AAQS+G
Sbjct  1031  ATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMVGALAAQSLG  1090

Query  1081  EPATQMTLNTFHYAGVSSKNVTLGVPRLKELINVAKKVKTPSLTVYLLPHCAKDSERAKS  1140
             EPATQMTLNTFHYAGVS+KNVTLGVPRLKE+INV+K++KTPSLTV+L    AKD+E+AK 
Sbjct  1091  EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDAEKAKD  1150

Query  1141  VQCQLEHATLNTVTASTEIFYDPDPTTTVIEEDREFVQAYFEMPDEDISLEKISPWLLRI  1200
             V C+LEH TL  VT +T I+YDPDP  TVI ED E+V  ++EMPD D+S  + SPWLLRI
Sbjct  1151  VLCKLEHTTLKKVTLNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRI  1208

Query  1201  VLNREMMTDKKLSMADIAEKINIEFGCDTLCIFNDDNAEKLVLHVRIMNDQD--PKHEET  1258
              L+R+ M DKKL+M  IA++I+  FG D   I+ DDNAEKLV  +RI  +       EE 
Sbjct  1209  ELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGADTQEEQ  1268

Query  1259  ISEEATTTFLKQLEANMLSEMTLKGIDQIRKVYMRE-----ARKTFFDVDGRIATENEWI  1313
             + +     FL+ +EANMLS++TL+GI  I KVYM +      ++     +G      +WI
Sbjct  1269  VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWI  1328

Query  1314  LETDGCNLLQVMSCPEVDFSRTTSNDIVEIIQVLGIEAARAALLKEIRDVISFDGSYVNY  1373
             LETDG  LL+V++  ++D  RTTSNDI EI +VLGIEA R A+ +E+ +VISFDGSYVNY
Sbjct  1329  LETDGTALLRVLAERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNY  1388

Query  1374  RHLAILVDFMTYRGYLMSITRHGINRNVTGPLMRCSFEETVEILMESAAFAEADHLRGVT  1433
             RHLA+L D MT +G+LM+ITRHGINR   G LMRCSFEETV+ILME++  AE D ++GV+
Sbjct  1389  RHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVS  1448

Query  1434  ENIILGQLGKFGTGSFDVFLNEKMLREAVDIPLPDGLEGQELFG--------DTSPTHQM  1485
             ENI+LGQL + GTG FD+ L+ +  +  ++IP    +      G        + SP+H  
Sbjct  1449  ENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGAGYYGGFAGSPNAHEFSPSH--  1506

Query  1486  TPFETMGTP--GGA--------------FSPSTPNDGAMFSPFN--GYSNEATFSPSG--  1525
             +P+ +  TP  GGA              FSP+   DG   SPFN  G+S  +   P G  
Sbjct  1507  SPWNSGVTPSYGGASWSPGAGGMSPSAGFSPAGNMDGGA-SPFNEGGWSPASPGDPLGAL  1565

Query  1526  SPSSP----FSP--YTPASPGYSPSSPAYSPSSPAYSPTSP-------------------  1560
             SP +P     SP  Y+P SP +S +SP YSP+SP+YSPTSP                   
Sbjct  1566  SPRTPAYGGMSPGAYSPTSPQFSMTSPHYSPTSPSYSPTSPAAGQSPASPSYSPTSPSYS  1625

Query        ------------------------------------------------------------  
                                                                         
Sbjct  1626  PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSP  1685

Query  1561  AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----------PTSPAYSPTSPAYSPTSPA  1610
              YSPTSP YSPTSP YSPTSP YSPTSP+Y           P+SP YSPTSP+YSPTSP 
Sbjct  1686  TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ  1745

Query  1611  YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPTSPAYTPTSPAYTPT  1670
             YSPTSP YSP+SP Y+P+SP Y+PTSP     SP YSPTSP Y+PTSP+YTP+SP Y+PT
Sbjct  1746  YSPTSPQYSPSSPTYTPSSPTYNPTSP--RAFSPQYSPTSPTYSPTSPSYTPSSPQYSPT  1803

Query  1671  SPAYTPTSPAYTPTSPA  1687
             SP YTP SP+  P + A
Sbjct  1804  SPTYTP-SPSDQPGTSA  1819


 Score =   166 bits (419),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 101/133 (76%), Gaps = 13/133 (10%)

Query  1568  AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----------PTSPAYSPTSPAYSPTSPA  1617
              YSPTSP YSPTSP YSPTSP YSPTSP+Y           P+SP YSPTSP+YSPTSP 
Sbjct  1686  TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ  1745

Query  1618  YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPTSPAYTPTSPAYTPTSPAYTPT  1677
             YSPTSP YSP+SP Y+P+SP Y+PTSP     SP Y+PTSP Y+PTSP+YTP+SP Y+PT
Sbjct  1746  YSPTSPQYSPSSPTYTPSSPTYNPTSP--RAFSPQYSPTSPTYSPTSPSYTPSSPQYSPT  1803

Query  1678  SPAYTPTSPAYTP  1690
             SP YTP SP+  P
Sbjct  1804  SPTYTP-SPSDQP  1815


 Score =   140 bits (352),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 83/110 (75%), Gaps = 15/110 (14%)

Query  1597  YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----------PTSPAYSPTSPAYSPTSPAY  1646
             YSPTSP YSPTSP YSPTSP YSPTSP+Y           P+SP YSPTSP+YSPTSP Y
Sbjct  1687  YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQY  1746

Query  1647  SPTSPAYTPTSPAYTPTSPAYTPT-----SPAYTPTSPAYTPTSPAYTPT  1691
             SPTSP Y+P+SP YTP+SP Y PT     SP Y+PTSP Y+PTSP+YTP+
Sbjct  1747  SPTSPQYSPSSPTYTPSSPTYNPTSPRAFSPQYSPTSPTYSPTSPSYTPS  1796



Lambda      K        H        a         alpha
   0.317    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2948400


  Database: subject.fasta
    Posted date:  Jun 3, 2015  4:53 PM
  Number of letters in database: 1,853
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
