TBLASTN 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|729325|sp|P39483|DHG2_BACME GLUCOSE 1-DEHYDROGENASE II
(GLCDH-II)
         (261 letters)

Database: data/sts
           87,792 sequences; 31,998,854 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3820341|emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragm...    47  1e-05
gi|1375419|gb|G27169|G27169 human STS SHGC-31983.                     43  1e-04
gi|3819804|emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragm...    39  0.002
gi|1375215|gb|G26965|G26965 human STS SHGC-31083.                     31  0.73
gi|177714|gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-109...    29  2.2
gi|5714409|gb|AF106665.1|AF106665 Mus musculus chromosome 6 clo...    29  2.2
gi|1341648|gb|G21322|G21322 human STS WI-12250.                       29  3.7

>gi|3820341|emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragment
           for sequence tagged site, clone okam5d07r [Kluyveromyces
           lactis]
           Length = 230
           
 Score = 46.9 bits (109), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 3/72 (4%)
 Frame = +1

Query: 108 NWNQVIDTNLTGAFLGSREAIKYFVEN---DIKGNVINMSSVHEMIPWPLFVHYAASKGG 164
           +W QVIDTN+ G F   + A+     +   D +  V+N+S+V+ ++  P    Y A+K  
Sbjct: 1   SWRQVIDTNINGTFYTLKYALPLMESSSSPDSEAAVVNLSAVNGLVGIPGISPYTATKHA 180

Query: 165 MKLMTETLALEYAPK 179
           +  +T+++ALEYA +
Sbjct: 181 VIGITQSVALEYAER 225


>gi|1375419|gb|G27169|G27169 human STS SHGC-31983.
           Length = 594
           
 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 34/73 (45%)
 Frame = -1

Query: 177 APKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQA 236
           AP   RVN + P  + T +    + DP +   + +  P+G   + E +     FL S ++
Sbjct: 312 APXRXRVNAVXPXVVMTSMGQATWXDPXKAXTMLNRXPLGXFAEVEHVVKAILFLLSDRS 133

Query: 237 SYVTGITLFADGG 249
              TG TL  +GG
Sbjct: 132 GMTTGSTLPVEGG 94


>gi|3819804|emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragment
           for sequence tagged site, clone okam6d01d [Kluyveromyces
           lactis]
           Length = 199
           
 Score = 39.5 bits (90), Expect = 0.002
 Identities = 18/49 (36%), Positives = 26/49 (52%)
 Frame = -1

Query: 200 FADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADG 248
           F D + +    S+IPMG  G P+E+     + AS  ++Y TG  L  DG
Sbjct: 157 FVDEDLKNKWHSLIPMGREGLPQELVGAYLYFASDASTYTTGSDLLVDG 11


>gi|1375215|gb|G26965|G26965 human STS SHGC-31083.
           Length = 268
           
 Score = 30.9 bits (68), Expect = 0.73
 Identities = 12/37 (32%), Positives = 19/37 (50%)
 Frame = -1

Query: 214 PMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGM 250
           PMG  G PE++  V A      +  +TG ++   GG+
Sbjct: 268 PMGXXGDPEDVXDVXAXXXXEXSGXITGTSVEVTGGL 158


>gi|177714|gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-1095)
           STS4-889.
           Length = 412
           
 Score = 29.3 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 7   DKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRS 40
           DKV  V GGS+G+GRA+A    ++  ++ V  R+
Sbjct: 316 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARN 215


>gi|5714409|gb|AF106665.1|AF106665 Mus musculus chromosome 6 clone
           D6wum9 map between Nkrp1 and Prp strain C57BL/6J,
           sequence tagged site
           Length = 299
           
 Score = 29.3 bits (64), Expect = 2.2
 Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
 Frame = -2

Query: 142 NMSSVHEMIPWPLFVHYAASKGGMKLMTETL--ALEYAPKGIRVNNIGPGAIDTPIN 196
           ++S    +I +P F+    S  G  L+  +L  A+ + P GI V+++GP ++ T +N
Sbjct: 172 SLSPTQYLIMFPSFLPCPLSHPGPFLLPSSLVIAVFFLPNGIEVSSLGPFSLRTLLN 2


>gi|1341648|gb|G21322|G21322 human STS WI-12250.
           Length = 586
           
 Score = 28.6 bits (62), Expect = 3.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 98  PVPSHELSLENWNQ-VIDTNLTGAFLGSREAIKYFVENDI 136
           PVP  ELS  +W+Q  + T+ T  F  S     YF  N I
Sbjct: 220 PVPMQELSKVHWSQFFLTTSPTMTFFFSHYLANYFFRNSI 339


  Database: data/sts
    Posted date:  Nov 26, 1999  5:52 PM
  Number of letters in database: 31,998,854
  Number of sequences in database:  87,792
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6165875
Number of Sequences: 87792
Number of extensions: 55665
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 10,666,284
effective HSP length: 50
effective length of query: 211
effective length of database: 6,276,684
effective search space: 1324380324
effective search space used: 1324380324
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 58 (27.0 bits)
