BLASTN 2.2.26+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: NCBI Transcript Reference Sequences
           2,903,055 sequences; 4,626,651,242 total letters



Query= hg19_dna range=chr1:1207307-1207372 5'pad=0 3'pad=0 strand=+
repeatMasking=none

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ref|XM_003267724.1|  PREDICTED: Nomascus leucogenys ATG14 autopha...   115    3e-24
ref|NM_001040441.1|  Homo sapiens zinc finger and BTB domain cont...   115    3e-24
ref|XM_003318468.1|  PREDICTED: Pan troglodytes zinc finger prote...   111    4e-23
ref|XM_527768.3|  PREDICTED: Pan troglodytes zinc finger protein ...   111    4e-23
ref|XM_003276378.1|  PREDICTED: Nomascus leucogenys S100P binding...   111    4e-23
ref|XM_003276377.1|  PREDICTED: Nomascus leucogenys S100P binding...   111    4e-23
ref|XM_001082839.2|  PREDICTED: Macaca mulatta transmembrane prot...   111    4e-23
ref|NM_001132567.1|  Pongo abelii zinc finger protein 665 (ZNF665...   111    4e-23
ref|XM_003311344.1|  PREDICTED: Pan troglodytes hypothetical prot...   110    1e-22
ref|XM_516695.3|  PREDICTED: Pan troglodytes poly (ADP-ribose) po...   110    1e-22
ref|XM_003268225.1|  PREDICTED: Nomascus leucogenys ankyrin repea...   110    1e-22
ref|XM_003268224.1|  PREDICTED: Nomascus leucogenys ankyrin repea...   110    1e-22
ref|XR_121161.1|  PREDICTED: Nomascus leucogenys zinc/RING finger...   110    1e-22
ref|XM_002812147.1|  PREDICTED: Pongo abelii spastin-like (LOC100...   110    1e-22
ref|XM_002805124.1|  PREDICTED: Macaca mulatta putative uncharact...   110    1e-22
ref|NM_173511.3|  Homo sapiens family with sequence similarity 11...   110    1e-22
ref|XM_515388.2|  PREDICTED: Pan troglodytes spastin, transcript ...   110    1e-22
ref|XM_001164367.1|  PREDICTED: Pan troglodytes spastin, transcri...   110    1e-22
ref|XM_003315843.1|  PREDICTED: Pan troglodytes desmocollin 1, tr...   108    5e-22
ref|XM_518630.3|  PREDICTED: Pan troglodytes arginyl-tRNA synthet...   108    5e-22


>ref|XM_003267724.1| PREDICTED: Nomascus leucogenys ATG14 autophagy related 14 homolog 
(S. cerevisiae) (ATG14), mRNA
Length=4771

 Score =  115 bits (62),  Expect = 3e-24
 Identities = 62/62 (100%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  5     GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa  64
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2865  GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA  2924

Query  65    aa  66
             ||
Sbjct  2925  AA  2926


>ref|NM_001040441.1| Homo sapiens zinc finger and BTB domain containing 8A (ZBTB8A), 
mRNA
Length=7333

 Score =  115 bits (62),  Expect = 3e-24
 Identities = 62/62 (100%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  5     GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa  64
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3677  GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA  3736

Query  65    aa  66
             ||
Sbjct  3737  AA  3738


 Score = 99.0 bits (53),  Expect = 3e-19
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  6     CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaa  58
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2824  CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAA  2876


>ref|XM_003318468.1| PREDICTED: Pan troglodytes zinc finger protein 273, transcript 
variant 1 (ZNF273), mRNA
Length=4430

 Score =  111 bits (60),  Expect = 4e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  1     TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa  60
             ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  2800  TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA  2741

Query  61    aaaaaa  66
             ||||||
Sbjct  2740  AAAAAA  2735


>ref|XM_527768.3| PREDICTED: Pan troglodytes zinc finger protein 273, transcript 
variant 2 (ZNF273), mRNA
Length=4335

 Score =  111 bits (60),  Expect = 4e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  1     TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa  60
             ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  2705  TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA  2646

Query  61    aaaaaa  66
             ||||||
Sbjct  2645  AAAAAA  2640


>ref|XM_003276378.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript 
variant 2 (S100PBP), mRNA
Length=4345

 Score =  111 bits (60),  Expect = 4e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  1     TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa  60
             ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2857  TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAA  2798

Query  61    aaaaaa  66
             ||||||
Sbjct  2797  AAAAAA  2792


>ref|XM_003276377.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript 
variant 1 (S100PBP), mRNA
Length=4359

 Score =  111 bits (60),  Expect = 4e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  1     TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa  60
             ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2871  TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAA  2812

Query  61    aaaaaa  66
             ||||||
Sbjct  2811  AAAAAA  2806


>ref|XM_001082839.2| PREDICTED: Macaca mulatta transmembrane protein 150B-like (LOC694136), 
mRNA
Length=3419

 Score =  111 bits (60),  Expect = 4e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  1     TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa  60
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  2716  TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAA  2775

Query  61    aaaaaa  66
              |||||
Sbjct  2776  GAAAAA  2781


>ref|NM_001132567.1| Pongo abelii zinc finger protein 665 (ZNF665), mRNA
 emb|CR859627.1| Pongo abelii mRNA; cDNA DKFZp459D1134 (from clone DKFZp459D1134)
Length=2274

 Score =  111 bits (60),  Expect = 4e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  1     TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa  60
             ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  2209  TCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA  2268

Query  61    aaaaaa  66
             ||||||
Sbjct  2269  AAAAAA  2274


>ref|XM_003311344.1| PREDICTED: Pan troglodytes hypothetical protein LOC100608148 
(LOC100608148), mRNA
Length=7609

 Score =  110 bits (59),  Expect = 1e-22
 Identities = 61/62 (98%), Gaps = 0/62 (0%)
 Strand=Plus/Minus

Query  5     GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa  64
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  6139  GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAA  6080

Query  65    aa  66
             ||
Sbjct  6079  AA  6078


>ref|XM_516695.3| PREDICTED: Pan troglodytes poly (ADP-ribose) polymerase family, 
member 14 (PARP14), mRNA
Length=7914

 Score =  110 bits (59),  Expect = 1e-22
 Identities = 61/62 (98%), Gaps = 0/62 (0%)
 Strand=Plus/Minus

Query  5     GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa  64
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  6571  GCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAA  6512

Query  65    aa  66
             ||
Sbjct  6511  AA  6510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 177382481523


  Database: NCBI Transcript Reference Sequences
    Posted date:  Mar 1, 2012  8:32 PM
  Number of letters in database: 4,626,651,242
  Number of sequences in database:  2,903,055



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5
