BLASTP 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|730725|sp|Q05362|SCHB_STRHA SCHB PROTEIN
         (138 letters)

Database: data/swissprot
           82,258 sequences; 29,652,561 total letters

Searching..................................................done

QUERY 1   MTEQQARIVAFDDVPPNRRRGGD----VRALLTPTTAGATSGFMGVAV------VR---- 46
504   1   MTEQQARIVAFDDVPPNRRRGGD----VRALLTPTTAGATSGFMGVAV------VR---- 46
10461 1   MTDQQVRIVSLGDIAPNRRRGGD----LRALLTPTTAGSTSGFMGVAI------VQ---- 46
6345  1   MDKMRPRVVDVKEIEPNRKRGGD----LRTLLTPVTVGATSGFMGLAI------MR---- 46
1128  11   TVAAAAKIAMSSVAPSHRQGGS----TRALLTPSSVGATSGFLGHIE------LA---- 55
72438 417                                                 ------VR---- 418
588   385                                                 ------VK---- 386
5811  383                                                 ------VK---- 384
7036  380                                                 ------VK---- 381
30070 833                                             GKLV------LG---- 838
22447 93                                             LGVSM------NRVDFA 103
10500 385                                                 ------VK---- 386
49644 385                                                 ------VK---- 386
48079 48       AKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLA---- 98
22446 93                                             LGVSM------NRVDFA 103
20808 93                                             LGVSM------NRVDFA 103
64209 31                                                  ------VK---- 32
33663 452          AAEDQKRYERELSD----MRATPTPTTAGKKVKFLG----------E---- 484
8178  0                                                           ----

QUERY 47  PGERISEHYHPYSEEFVYVTAGAFEV----DLDD----VPHPLRT---------GQG--- 86
504   47  PGERISEHYHPYSEEFVYVTAGAFEV----DLDD----VPHPLRT---------GQG--- 86
10461 47  PGDRIAEHYHPYSEEFVYVTEGALEV----DLDG----VPHSLGT---------GQG--- 86
6345  47  PGERISEHYHPYSEEFVYVVEGRLEV----DLDG----ETFPLRA---------DQG--- 86
1128  56  PGESVTEHYHPFSDKYLYLIEGSLVV----RVNG----EEVRLER---------DEA--- 95
72438 419 PGKMLSLHKHFHRSEHWICVKGTAEV----TIED----RVTILHE---------NQS--- 458
588   387 PGEGISEQQHYHRAEHWIIVAGTAKI----TIKG----EVKILTE---------NES--- 426
5811  385 PGARLSLQMHHHRAEHWIVVSGTAQV----TCDD----KTFLLTE---------NQS--- 424
7036  382 PGATLSLQMHHHRAEHWIVVSGTAEV----TRGD----EVLLLTE---------NQS--- 421
7422  228  GDRIVDHYHEYHTETFYCLEGQMTM----WTDG----QEIQLNP---------GDF--- 266
8765  46         HKHDIHDQIAYVAAGSFEV----VIEG----EKRILKT---------GDA--- 78
30070 839 PYEEKGKQHVGQDILVFYVNFGDLLC----TLHE----TPYKLTT---------GDS--- 878
22447 104 PGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRA---------GET--- 151
10500 387 PGEKFVAQMHHHRAEHWIVLSGTARV----TKGE----QTYMVSE---------NES--- 426
59757 20         HHHEYPQ-IILGLMGKSEL----SIED----SSVCLSP---------GMG--- 51
49644 387 PGGAFSMQMHHHRAEHWVILAGTGQV----TVNG----KQFLLTE---------NQS--- 426
48079 99  PGGVIPMHTHPGASEILNVVEG                                       120
22446 104 PGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRA---------GET--- 151
20808 104 PGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRA---------GET--- 151
64209 33  EGLRANWFYNPVLEEFA---------------------IPDSYQE---------GHG--- 59
33663 485 PKKAPMNGYQKFSQELL                                            501
8178  325 PGVIKAFHYHEKQDDLWFFPTGHAQV----VLYD----LREDSKTKGETDVYYMGEDNPM 376

QUERY 87  -LLIPKDVRHRFRNTGDVEARLV---FHLG---PLAPRPDLGHVDTEETDETAPAGVVS 138
504   87  -LLIPKDVRHRFRNTGDVEARLV---FHLG---PLAPRPDLGHVDTEETDETAPAGVVS 138
10461 87  -LLIPQDMRHRFRNAGDVEARLV---FHLG---PLAPRPELGHVDTEDAEGNA       132
6345  87  -LMIPIDMRHRFRNVGDEEARMV---FHLS---PLAPKPSLGHVDTE             126
1128  96  -LFVTRGQRHRIENRGNVPARVV---FQIS---PLAPRPELGHVDTEPVPNPAAA     143
72438 459 -IYIPEGAIHRLGNPGKIMLELVE--IQTG---AYLGEDDIIRVADESRNE         503
588   427 -VYIPVGVKHCLENPGKIALELI                                     448
5811  425 -TYIPIASVHRLANPGKIPLEII                                     446
7036  422 -TYIPLGVTHRLKNPGKLPLELI                                     443
7422  267 -LHVPANTVHSYR                                               278
8765  79  -YMAVKNEMH                                                  87
30070 879 -FYVPSGNHYNIKNLLNVESSLL---F                                 901
22447 152 -FLIPRGLMHFQFNVGKTEASMV---VFFN---SQSP                       181
10500 427 -TFIPPNTIHALENPGMTPLKLI                                     448
59757 52  -YRINANVEHSFSGTSNNQV-LV---MNLP---PFISMTDV                   84
49644 427 -TFIPIGAEHSLENPGRI                                          443
22446 152 -FLIPRGLMHFQFNVGKTEASMV                                     173
20808 152 -FLIPRGLMHFQFNVGKTEASMV                                     173
64209 60  -VNVKITFSHRSRNTGQI                                          76
39295 142        IRCRFRNSTRMEFRLQIWRYSMGPSPPIAPAPDLEEV---LTNITAPPG    187
39294 142        IRCRFRNSTRMEFRLQIWRYSMGPSPPIAPAPDLEEV---LTNITAPPG    187
8178  377 LLLIPKGVAHGYRVLGETPLTII---Y                                 400
  Database: data/swissprot
    Posted date:  Feb 2, 2000  9:39 AM
  Number of letters in database: 29,652,561
  Number of sequences in database:  82,258
  
Lambda     K      H
   0.319    0.139    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8952568
Number of Sequences: 82258
Number of extensions: 387403
Number of successful extensions: 727
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 23
length of query: 138
length of database: 29,652,561
effective HSP length: 47
effective length of query: 91
effective length of database: 25,786,435
effective search space: 2346565585
effective search space used: 2346565585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 61 (28.2 bits)
