BLASTP 2.2.2 [Jan-08-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29294651|ref|NP_803187.1| dicer1 [Homo sapiens]
         (1922 letters)

Database: NC_000964 
           4105 sequences; 1,221,421 total letters

Searching.........done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis...    69  3e-12
gi|16080962|ref|NP_391790.1| ATP-dependent RNA helicase [Bacillu...    48  6e-06
gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase [Bacillu...    42  3e-04
gi|16077525|ref|NP_388339.1| hypothetical protein BSU04580 [Baci...    42  3e-04
gi|16079569|ref|NP_390393.1| hypothetical protein BSU25140 [Baci...    39  0.002
gi|16077123|ref|NP_387936.1| transcription-repair coupling facto...    38  0.007
gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillu...    37  0.009
gi|16080600|ref|NP_391427.1| late competence protein [Bacillus s...    36  0.025
gi|16077810|ref|NP_388624.1| hypothetical protein BSU07430 [Baci...    35  0.042
gi|16078982|ref|NP_389803.1| hypothetical protein BSU19220 [Baci...    33  0.12
gi|16079514|ref|NP_390338.1| hypothetical protein BSU24580 [Baci...    31  0.80
gi|16079359|ref|NP_390183.1| ATP-dependent DNA helicase [Bacillu...    30  1.0
gi|16079280|ref|NP_390104.1| hypothetical protein BSU22220 [Baci...    29  2.3
gi|16081087|ref|NP_391915.1| transcriptional regulator (NtrC/Nif...    28  5.2
gi|16080045|ref|NP_390871.1| pullulanase [Bacillus subtilis subs...    27  8.8

>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis
            subsp. subtilis str. 168]
          Length = 249

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 36/176 (20%)

Query: 1663 ISGFENFEKKINYRFKNKAYLLQAFTHASY---HYNTITDCYQRLEFLGDAILDYLITKH 1719
            +  F+ F+++I+  F+N+  L QAFTH+SY   H     +  +RLEFLGDA+L+  I++ 
Sbjct: 17   VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1720 LYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEK 1779
            L+      S G LT LR+A+V      SLA +  +                D V    + 
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF---------------GDLVLLG-KG 120

Query: 1780 NEMQGMXXXXXXXXXXXXXXXXXXVPKAMGDIFESLAGAIYMDSGMS-LETVWQVY 1834
             EM G                    P  + D+FE+  GA+Y+D G+  +E+  +VY
Sbjct: 121  EEMTG----------------GRKRPALLADVFEAFIGALYLDQGLEPVESFLKVY 160



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRL 1359
            ERLE LGD+ L+  I+ +LF  YP   EG L+ +R+  V   +L  L
Sbjct: 59   ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSL 105


>gi|16080962|ref|NP_391790.1| ATP-dependent RNA helicase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 479

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 28/82 (34%), Positives = 41/82 (49%), Gaps = 1/82 (1%)

Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPISNYI 561
           +V+ +F+  E   L+AT +   G+DI   +LV+ +DLP E  SYV   GR  RA      
Sbjct: 281 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA 340

Query: 562 MLADTDKIKSFEEDLKTYKAIE 583
           +   T   K F  D++ Y   E
Sbjct: 341 ISFVTAFEKRFLADIEEYIGFE 362


>gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 682

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 26/98 (26%), Positives = 53/98 (53%), Gaps = 4/98 (4%)

Query: 445 IIFVERRYT----AVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRK 500
           + FVE+       A ++  LI+E+ K D + A    N ++    GK        +    +
Sbjct: 456 LAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDE 515

Query: 501 QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFD 538
           +++V+R+F A+   +L++T++VE GV++P   ++V +D
Sbjct: 516 KDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYD 553


>gi|16077525|ref|NP_388339.1| hypothetical protein BSU04580
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 511

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 30/94 (31%), Positives = 44/94 (45%), Gaps = 7/94 (7%)

Query: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPIS 558
           K+   LRKF+     +L+AT +   G+DI     V  FD+P +  SYV   GR  RA  +
Sbjct: 296 KRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKT 355

Query: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSK 592
              M   T + KS        +AIE+  + K  +
Sbjct: 356 GMAMTFITPREKSM------LRAIEQTTKRKMDR 383


>gi|16079569|ref|NP_390393.1| hypothetical protein BSU25140
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 438

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 25/81 (30%), Positives = 42/81 (50%), Gaps = 5/81 (6%)

Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPI 557
           R++++V+++    E   +IAT +   G+DI   + V+ ++LP +   YV   GR ARA  
Sbjct: 282 RERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGS 341

Query: 558 SNYIM----LADTDKIKSFEE 574
           S   M    L D D +   E+
Sbjct: 342 SGQAMTIYELTDEDALVRLEK 362


>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1177

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 502 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFD 538
           E V+  F   E+++L++T+I+E GVDIP  N ++ FD
Sbjct: 874 ETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFD 910


>gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 661

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 24/69 (34%), Positives = 38/69 (54%), Gaps = 6/69 (8%)

Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQSKGR-ARAP 556
           E++R  R  + ++L+  +++ EG+DIP+ +LV   D   E      RS +Q+ GR AR  
Sbjct: 486 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 545

Query: 557 ISNYIMLAD 565
               IM AD
Sbjct: 546 EGRVIMYAD 554


>gi|16080600|ref|NP_391427.1| late competence protein [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 463

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 490 RNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPK 530
           R   + AE + ++E +++FR  + +LLI T+I+E GV +PK
Sbjct: 355 RTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPK 395


>gi|16077810|ref|NP_388624.1| hypothetical protein BSU07430
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 376

 Score = 35.0 bits (79), Expect = 0.042
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
           EA+  ++ +++  F   E  LL+AT I   G+DI     V+  D+P E   YV   GR
Sbjct: 274 EAKKMERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDE-DGYVHRSGR 330


>gi|16078982|ref|NP_389803.1| hypothetical protein BSU19220
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 591

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 497 EFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
           + RK+++   +F   E  +++ATS    G+D      V+   +P +  SY Q  GRA
Sbjct: 267 DVRKEQQ--ERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRA 321


>gi|16079514|ref|NP_390338.1| hypothetical protein BSU24580
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 557

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 31/108 (28%), Positives = 46/108 (41%), Gaps = 22/108 (20%)

Query: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEV 504
           IIF E R T + L   +++ G        ISS    G   G  + +   M+  FR + +V
Sbjct: 376 IIFTEYRATQIYLQWFLQQNG--------ISSVPFRG---GFKRGKKDWMKDLFRGKIQV 424

Query: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
           L           IAT    EG+++  CN ++ +DLP       Q  GR
Sbjct: 425 L-----------IATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR 461


>gi|16079359|ref|NP_390183.1| ATP-dependent DNA helicase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 496

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
           + ++F  ++ +++  T+    GVD P    V+ F LP    +++Q  GRA
Sbjct: 271 IQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA 320


>gi|16079280|ref|NP_390104.1| hypothetical protein BSU22220
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 749

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 22/76 (28%), Positives = 38/76 (49%), Gaps = 2/76 (2%)

Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA--RAP 556
           +++ E+ R  R  +   +++T+ +E GVDI +  + V    P    S  Q  GRA  R  
Sbjct: 331 KERREIERGLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHG 390

Query: 557 ISNYIMLADTDKIKSF 572
            S  IM+A++  I  +
Sbjct: 391 ESLIIMVANSTPIDQY 406


>gi|16081087|ref|NP_391915.1| transcriptional regulator (NtrC/NifA
           family) [Bacillus subtilis subsp. subtilis str. 168]
          Length = 461

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 491 NKQMEAEFRKQEEVLRK-------FRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEY 543
           NK M+ E  ++ +VL K       F   + + L+    ++EG  I               
Sbjct: 37  NKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQA--LQEGKTIKNVK----------- 83

Query: 544 RSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGET 599
           +SY  +KG+    I++   +    KI+   E  K    +E+++R   +K   T  T
Sbjct: 84  QSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMNKKGSTTYT 139


>gi|16080045|ref|NP_390871.1| pullulanase [Bacillus subtilis subsp.
            subtilis str. 168]
          Length = 718

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/31 (35%), Positives = 19/31 (60%)

Query: 1533 ENCGVDTGKQSISYDLHTEQCIADKSIADCV 1563
            + CG+ +    +  D+ +E+ +A K IADCV
Sbjct: 361  DECGMPSNGTGVGNDIASERRMARKFIADCV 391


  Database: NC_000964
    Posted date:  Jun 21, 2009 11:38 AM
  Number of letters in database: 1,221,421
  Number of sequences in database:  4105
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,855
Number of Sequences: 4105
Number of extensions: 166484
Number of successful extensions: 406
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 23
length of query: 1922
length of database: 1,221,421
effective HSP length: 98
effective length of query: 1824
effective length of database: 819,131
effective search space: 1494094944
effective search space used: 1494094944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
BLASTP 2.2.2 [Jan-08-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|155030234|ref|NP_037367.3| ribonuclease III, nuclear isoform
1 [Homo sapiens]
         (1374 letters)

Database: NC_000964 
           4105 sequences; 1,221,421 total letters

Searching.........done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis...   119  9e-28
gi|50812236|ref|NP_389601.2| polyketide synthase [Bacillus subti...    29  1.7
gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subt...    28  2.8
gi|16080582|ref|NP_391409.1| peptide chain release factor 2 [Bac...    28  3.7
gi|16079863|ref|NP_390689.1| required for assembly of the spore ...    27  6.3
gi|16077459|ref|NP_388273.1| succinate-semialdehyde dehydrogenas...    27  6.3
gi|16080133|ref|NP_390959.1| hypothetical protein BSU30810 [Baci...    27  8.2
gi|16078464|ref|NP_389283.1| hypothetical protein BSU14000 [Baci...    27  8.2

>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis
            subsp. subtilis str. 168]
          Length = 249

 Score =  119 bits (299), Expect = 9e-28
 Identities = 80/231 (34%), Positives = 126/231 (53%), Gaps = 9/231 (3%)

Query: 1104 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGH--NQRMEFLGDSIMQLVATEY 1161
            +++  EF+E I V F + +LL +AFT  +    H    +  N+R+EFLGD++++L  + +
Sbjct: 17   VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1162 LFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVA-LRTKTLADL 1220
            LF  +P   EG LT LR+++V   +   +A EL   +  +     +      R   LAD+
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADV 136

Query: 1221 LESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD 1280
             E+FI ALY+D+ LE V +F+ V  FP++ +   +    D KSQLQ+    ++ +GK   
Sbjct: 137  FEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQE---YVQRDGK--G 190

Query: 1281 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331
               YK     GP+H R +   V  KGE +G G G S ++AE  AA +AL K
Sbjct: 191  SLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241



 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 40/105 (38%), Positives = 55/105 (52%)

Query: 965  NERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLY 1024
            NERLEFLGDAV+E   S  L+  +P++ EG L   R AIV    L  LA +L     +L 
Sbjct: 58   NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117

Query: 1025 AHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069
              G ++         +A+ FEA IGA+YL+  LE  +      +F
Sbjct: 118  GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVF 162


>gi|50812236|ref|NP_389601.2| polyketide synthase [Bacillus subtilis
            subsp. subtilis str. 168]
          Length = 4262

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 8/74 (10%)

Query: 1188 AKVAEELGMQEYAITNDKTKRPVALRTKTLADLLESFIAALYIDKDL-EYVHTFMNVCFF 1246
            ++V+  LGM E AI    T+ P+A   K   D +++      ++ DL E++HT + +   
Sbjct: 3375 SRVSRFLGMTEPAIPEPATQAPLAQENK---DEVKTLSIEKRLEHDLKEHIHTLLKI--- 3428

Query: 1247 PRLKEFILNQDWND 1260
                   LN++W D
Sbjct: 3429 -SKDRLNLNKNWAD 3441


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 821

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 20/77 (25%), Positives = 38/77 (48%), Gaps = 14/77 (18%)

Query: 787 DPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREE-------------ALQKIRQKNT 833
           + +YQ L K   +L+ +LAN  KV +  +++L + +E              L+ I  ++ 
Sbjct: 441 EEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDL 500

Query: 834 MRRE-VTVELSSQGFWK 849
           + RE + V L+  G+ K
Sbjct: 501 IERENIVVTLTHNGYVK 517


>gi|16080582|ref|NP_391409.1| peptide chain release factor 2
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 366

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 14/48 (29%), Positives = 25/48 (51%)

Query: 789 QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRR 836
           Q+     S V++ HL  N     QT++ ++  RE A++ ++ K   RR
Sbjct: 251 QHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRR 298


>gi|16079863|ref|NP_390689.1| required for assembly of the spore coat
            (stage VI sporulation) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 575

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 1274 TEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPS-IQQAEMGAAMDALEKY 1332
            T+ KEP+IPLY+                  F+ E +      S +++    +A +A+ ++
Sbjct: 140  TQDKEPEIPLYE--------------APAAFREEELSEPPAHSVVEEPGASSAEEAVLQH 185

Query: 1333 NFPQMAHQKRFIERKYRQELKEMRWEREHQE---REPDETEDIKK 1374
              P    +    +   R+EL+  + E E  E    EP+  ED+K+
Sbjct: 186  EPPAEPPELFISKAGLREELETEKAESEPPESVASEPEAREDVKE 230


>gi|16077459|ref|NP_388273.1| succinate-semialdehyde dehydrogenase
            [Bacillus subtilis subsp. subtilis str. 168]
          Length = 462

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 1045 EALIGAVYLEGSLEEAKQLFGR 1066
            E L GA Y+E   EEAK+++GR
Sbjct: 85   EVLYGAGYIEWFAEEAKRVYGR 106


>gi|16080133|ref|NP_390959.1| hypothetical protein BSU30810
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 274

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (54%)

Query: 872 YHQCLMHLDKLIGYTFQDRCLLQLAMTHP 900
           + Q  +H  KLIGY+   R     AMT+P
Sbjct: 85  FDQLKLHKVKLIGYSMGGRLAYSFAMTYP 113


>gi|16078464|ref|NP_389283.1| hypothetical protein BSU14000
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 392

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 953 GQDDPTPSRINHNERLEFLGDAVVEFLTSV----HLYYLFPSLEEGGLATY 999
           G DD    R  + +RL+++ D +V     V      +Y+FPS++  G+ ++
Sbjct: 278 GFDDALIMREQYKKRLDYVYDRLVSMGLDVVKPSGAFYIFPSIKSFGMTSF 328


  Database: NC_000964
    Posted date:  Jun 21, 2009 11:38 AM
  Number of letters in database: 1,221,421
  Number of sequences in database:  4105
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,679,991
Number of Sequences: 4105
Number of extensions: 104631
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 11
length of query: 1374
length of database: 1,221,421
effective HSP length: 95
effective length of query: 1279
effective length of database: 831,446
effective search space: 1063419434
effective search space used: 1063419434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
