########################################
# Program: needle
# Rundate: Mon 14 Jul 2008 11:37:15
# Commandline: needle
#    [-asequence] asis: 
#    [-bsequence] asis: 
#    -filter
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: asis
# 2: asis
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3653
# Identity:    2296/3653 (62.9%)
# Similarity:  2301/3653 (63.0%)
# Gaps:        1202/3653 (32.9%)
# Score: 10155.0
# 
#
#=======================================

asis               1 TATTTTTTGGATTTTTTTCTAGATTTTCTAGGTTATTTAAACCGTTTTTT     50
                                                                       
asis               0 --------------------------------------------------      0

asis              51 TTTAATTTAGTGTTTGAGTTTTGACAGGTCTCCACTTTGGGGGCTCCATC    100
                                                                       
asis               0 --------------------------------------------------      0

asis             101 GCAAGGAAATTAGAATTCTTATACTTGGTTCTCTTTCCCAGGGACTCCAA    150
                                                                       
asis               0 --------------------------------------------------      0

asis             151 GGATCTTTTCATTAGTTTGGATTTTGGTGTTTTCTTTAATTTTGTTAAGA    200
                                                                       
asis               0 --------------------------------------------------      0

asis             201 AACAAATCCTTTCTAGAGTTTTTTCTAGCATTATGTTTTTTTTTCTCCTT    250
                                                                       
asis               0 --------------------------------------------------      0

asis             251 ATCTAAGGGGGTTTGTCGAGGTTTCTTAAATCTTTTTTTCTCTGGGTTTT    300
                                                                       
asis               0 --------------------------------------------------      0

asis             301 AAAATTGTTTAAATTTTTTTGACCGAGGGGTTGGGGTGGTTTTCTCATGA    350
                                                                       
asis               0 --------------------------------------------------      0

asis             351 TAACAGGGGCTGGTGCTTTAGATCCTACCTCTACTGACCCGGGGTCTGCT    400
                                                                       
asis               0 --------------------------------------------------      0

asis             401 ACTGTGGCTTCTGATGAAGATCCACAGTATGCGCCTACGGAARCTCGGCA    450
                                                                       
asis               0 --------------------------------------------------      0

asis             451 GTTTGGTGTTCGAAATCCAGCCCCTCGAATTAATACTCTTGTGCAGGTGG    500
                                                                       
asis               0 --------------------------------------------------      0

asis             501 TTGACGAGCGCGGTATCGAATTGCAAAATTTGGGGCGGGACCCCGCTGTT    550
                                                                       
asis               0 --------------------------------------------------      0

asis             551 CCGCCTGTTGCTCCGGGGGGGGCAGGTTAATCCTCCAGTCGTCTCCTTTT    600
                                                                       
asis               0 --------------------------------------------------      0

asis             601 GGGGGCGTCTTTGACGGGGGTTTAAATCTTTCTTTGGTTGTGGATAGGAT    650
                                                                       
asis               0 --------------------------------------------------      0

asis             651 TTTTTTTCTAATATCGATCCTACCTGTTTTGGCGGGGCTATTACTTTGTT    700
                                                                       
asis               0 --------------------------------------------------      0

asis             701 ACTTTTGACCGAAATTTTAATGGAAATTTCTTTGATTCAAATGAATCCCT    750
                                                                       
asis               0 --------------------------------------------------      0

asis             751 TAGTTTTCCAACACTTTTTTTTGGTTTTTTTAGGGATAGTCTACGCTGTG    800
                                                                       
asis               0 --------------------------------------------------      0

asis             801 GTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAATAGGG    850
                                                                       
asis               0 --------------------------------------------------      0

asis             851 AGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGACTAT    900
                                                                       
asis               0 --------------------------------------------------      0

asis             901 AATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTGGGAG    950
                                                                       
asis               0 --------------------------------------------------      0

asis             951 GGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGATACT   1000
                             .||||||                                .||
asis               1 --------TTATTAA--------------------------------TCT     10

asis            1001 TATTGT------GTAGTAGCTCATTTTCATTATGTTCTTCGAATGGGAGC   1044
                     |||.||      |||..|..||  ||||.||||.||.|    ||.|    
asis              11 TATGGTTTTGCCGTAAAATTTC--TTTCTTTATTTTTT----ATTG----     50

asis            1045 AGTCATTGGTATTTTTTTGGTTTTTTTTT------GAAATTTTTAGGTTA   1088
                          ||.|.|||||.|||.||||.||||      | |||||||||||.|
asis              51 -----TTAGGATTTTGTTGATTTTATTTTTCTCAAG-AATTTTTAGGTCA     94

asis            1089 TTTAGACC-----ATTTTTTTTT--GTTTCGCTAATTAGAATTTTATTAG   1131
                     .|||||||     ||||||||.|  ||.|      |||.|.|||||||| 
asis              95 ATTAGACCGGCTTATTTTTTTGTCAGTGT------TTAAAGTTTTATTA-    137

asis            1132 CCTTTGGTTTTTTTTTATTTTT----TGGGGTTAAGACAAGGTGTCGT-T   1176
                                     ||||||    .||||...||||..|||||..| |
asis             138 ----------------ATTTTTGGGGGGGGGGGGAGACGGGGTGTTATCT    171

asis            1177 GAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATA------------   1214
                     ||||||||||             ||  ||.||.||.||            
asis             172 GAATTAGTTT-------------TT--GGGAGTCTCTAGACATCTCATGG    206

asis            1215 ---------GGATCTACCTTTTATCTTTCTAAT--CTTTT----GTTTTA   1249
                              ||..||.||.|.|||..||||.||  |||||    |    |
asis             207 GTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGG----A    252

asis            1250 GT-ATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTTTTTT   1298
                     || |.|||     |||||||||.||| .||||||...|||||||||||||
asis             253 GTAAGAAT-----TTCGATTCAGCAA-CTTTAGTTCACAGTCTTTTTTTT    296

asis            1299 TATTTTGAAAAGGTTTTAACACTCT--TGGTTTTGGAGGCTTTGGCTTTC   1346
                     ||||..| |||||||||||.|.|||  ||||||| ||..||||.|.||||
asis             297 TATTAAG-AAAGGTTTTAATATTCTTGTGGTTTT-GAACCTTTAGGTTTC    344

asis            1347 TT--CTTACTCTTAGGAGGA-TGGGCGCTAGAAAGAGTTTTAAGAGGGTG   1393
                     ||  .|||| |||.|..||| |||||.||||||.||||||||||||.|||
asis             345 TTTCTTTAC-CTTCGAGGGATTGGGCACTAGAATGAGTTTTAAGAGTGTG    393

asis            1394 TGAAAGGGGG-TTAATAGCAGG---ATTTGCTTTTTTAACTTATACTGGT   1439
                     |||||||||| ||.||||||||   |  |||||||||||||||||||||.
asis             394 TGAAAGGGGGCTTGATAGCAGGGGAA--TGCTTTTTTAACTTATACTGGC    441

asis            1440 TCGTAACGCATTAGCTCAACTCTCTCTTGTAGTTCTAGCAGCCGCCTTTT   1489
                     |||||||||||.||.||||||||||||||.||||||||||||||||||||
asis             442 TCGTAACGCATCAGTTCAACTCTCTCTTGCAGTTCTAGCAGCCGCCTTTT    491

asis            1490 CTTTGTTGGGGGAGGGTTTAGGAGGAGTCTTTTTTTTCCTAACCCAA-GG   1538
                     .|||||||||||.|||||.||  .||||.|||||||| ||||.|||| ||
asis             492 TTTTGTTGGGGGGGGGTTAAG--AGAGTGTTTTTTTT-CTAATCCAAGGG    538

asis            1539 TGTTTCTTTCTTTTTTTCTTT-AAAGTTC-TTGACTGTTGGCAC--TTGT   1584
                     |.||.||||||||.||||||| |||.||| |||.||||.|.|||  ||.|
asis             539 TCTTACTTTCTTTCTTTCTTTAAAAATTCTTTGGCTGTCGACACCTTTCT    588

asis            1585 CTCCATAAATTTTC----TTTCTTGTAAAGGGCTC-CTAAGGC--TTCTT   1627
                     ||||....|.|.||    |||||       ||||| ||..|||  ||.||
asis             589 CTCCCGTCAGTCTCATGGTTTCT-------GGCTCTCTTGGGCTTTTTTT    631

asis            1628 GTTTCTGAATTCCTCTTTTCTTTTATTCTGTTTTGAGCTTATTTTTCTTG   1677
                     ||||.|||||.|||||||| ||||||||||||||||||||||||||||||
asis             632 GTTTGTGAATGCCTCTTTT-TTTTATTCTGTTTTGAGCTTATTTTTCTTG    680

asis            1678 TTAGCTATTACGTAGGCATAGGGCAAATAATTTTTTTTTCTG---CTCT-   1723
                     ||..||||||||||||.||||||||||||||||||||||| |   |||| 
asis             681 TTTACTATTACGTAGGTATAGGGCAAATAATTTTTTTTTC-GCGTCTCTT    729

asis            1724 --------CATTA-------TTCCTTCTCC---CTGCTTGTTTCACCCT-   1754
                             |||||       ||..||| ||   ||.|||.|.||||||| 
asis             730 GGCATGCCCATTACTCTAGTTTTATTC-CCGGGCTTCTTCTCTCACCCTA    778

asis            1755 GTGGGCTCTTTGAGCCC-CACT-AAGTGAGCGGGGCTCCTGCTTCCGCTC   1802
                     |.||||||||||||||| |||| ||||||||||||||||.||||||||||
asis             779 GAGGGCTCTTTGAGCCCACACTCAAGTGAGCGGGGCTCCCGCTTCCGCTC    828

asis            1803 AATTAAATTTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTC   1852
                     ||||||| ||||||||||||||||||||||||||||||||||||||||||
asis             829 AATTAAA-TTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTC    877

asis            1853 AGATTGATGGACCTAATCAATCAATTGTATCGCTATACAATCTAGTACCC   1902
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
asis             878 AGATTGATGGACCTAGTCAATCAATTGTATCGCTATACAATCTAGTACCC    927

asis            1903 CTACCAGGGTACCAAGAGAGAGATAACTAGGGTGAATACTACGACTTAGA   1952
                     ||||||||||||||.|||||||||||||||||||||||||||||||||||
asis             928 CTACCAGGGTACCAGGAGAGAGATAACTAGGGTGAATACTACGACTTAGA    977

asis            1953 TGTAGTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTAYA   2002
                     ||||.|||||||||||||||||||||||||||||||||||||||||||.|
asis             978 TGTACTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTATA   1027

asis            2003 TATTTGTTCATTACATATTTGTTGACTTTTCTATCTCTGCTTTTACTTTT   2052
                     ||||||.||||||||||||||||||.||||||||.||.|| |||||||||
asis            1028 TATTTGCTCATTACATATTTGTTGATTTTTCTATGTCCGC-TTTACTTTT   1076

asis            2053 T-TATTTATTTTTAAATCTTTTTAACTTCAGCTGTTTTTCCTTATCTATT   2101
                     | ||||            ||||||||||||||||||||||||||||||||
asis            1077 TATATT------------TTTTTAACTTCAGCTGTTTTTCCTTATCTATT   1114

asis            2102 TGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTT   2151
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1115 TGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTT   1164

asis            2152 TGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCA   2201
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1165 TGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCA   1214

asis            2202 TTATAGTTTATCAGTTGAGAGGAATTTAGTATAAGAAGGCCCATTGGGGC   2251
                     |||||||.|||||||||||||||||||||||||||||.|||..|..||||
asis            1215 TTATAGTCTATCAGTTGAGAGGAATTTAGTATAAGAAAGCCTGTCAGGGC   1264

asis            2252 TCTTGTCTTATCCAAGAACTGGTAA-GATTTAATTCT----ACCGGGA--   2294
                     |||||.||||||||||||||||||| |||    ||||    |..||||  
asis            1265 TCTTGCCTTATCCAAGAACTGGTAAGGAT----TTCTTGACAGAGGGACT   1310

asis            2295 CGGTAGAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGCTATAGG   2344
                     |.|| .|||||||||||||||||||||||||||||||||||||.||||.|
asis            1311 CTGT-CAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGTTATAAG   1359

asis            2345 GACTAGGTGCTAGGGAGGTATTAGGGCACCGCTCTTTATACAATCTCCAT   2394
                     |..||||||||.||..||||||||||||||||||||.|||||.|||||||
asis            1360 GCTTAGGTGCTTGGAGGGTATTAGGGCACCGCTCTTAATACAGTCTCCAT   1409

asis            2395 AGATACAACCAGGTCAACTAGGACAACGGAGGACGTTGACAGAGCATAAA   2444
                     ||.|..|||||||||||||||||||||||||||||||||||.|||||..|
asis            1410 AGGTGTAACCAGGTCAACTAGGACAACGGAGGACGTTGACAAAGCATGGA   1459

asis            2445 TAGCGATAGCGTACAAGATAWAATAGGGGCAGTGGTAGCGAAGCGTAGAA   2494
                     |||||||||||||.||||||.||| |||||||||||||||||||||||||
asis            1460 TAGCGATAGCGTAGAAGATAAAAT-GGGGCAGTGGTAGCGAAGCGTAGAA   1508

asis            2495 GAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAAT   2544
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1509 GAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAAT   1558

asis            2545 ATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAAGGGTGTGGCA   2594
                     |||||||||||||||||||||||||||||||||||||||.|||.||||||
asis            1559 ATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAGGGGAGTGGCA   1608

asis            2595 AAGAGAAATGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATT   2644
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
asis            1609 AAGAGAAGTGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATT   1658

asis            2645 ATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTT   2694
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1659 ATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTT   1708

asis            2695 AACTCAATAGGAGGAGCTGGGGTAGAACGTTTCTAGTTCGGGGGTAACCG   2744
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
asis            1709 AACTCAATAGGAGGAGCTGGGGTAGAACGTATCTAGTTCGGGGGTAACCG   1758

asis            2745 CAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAG   2794
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1759 CAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAG   1808

asis            2795 TTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGT   2844
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1809 TTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGT   1858

asis            2845 GATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAA   2894
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1859 GATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAA   1908

asis            2895 CCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCT   2944
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            1909 CCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCT   1958

asis            2945 TTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGG-TTTAAACTCC   2993
                     ||||||||||||||||||||||||||||||||||||||| ||||||||||
asis            1959 TTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTTAAACTCC   2008

asis            2994 TTTGGCAAAGATTGACTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAG   3043
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
asis            2009 TTTGGCAAAGATTGATTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAG   2058

asis            3044 TCTTTATWAACACCAGTAGGTTCAATAAGGTAGTAATCCAATAGAATGGA   3093
                     |||||||.|.|||||||||||||||||||||||||.||||||||||||||
asis            2059 TCTTTATTAGCACCAGTAGGTTCAATAAGGTAGTAGTCCAATAGAATGGA   2108

asis            3094 AAACTCAAGATCTAATCTCTCGAYTTCCTAGTGTCATGGAAATCAGCCAG   3143
                     ||||||.||||||||||||||||.||||||||||||||||||||||||||
asis            2109 AAACTCGAGATCTAATCTCTCGATTTCCTAGTGTCATGGAAATCAGCCAG   2158

asis            3144 GTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGACTAGCGAGAGAGT   3193
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
asis            2159 GTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGGCTAGCGAGAGAGT   2208

asis            3194 CTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACG   3243
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            2209 CTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACG   2258

asis            3244 GAACACTAGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTC   3293
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
asis            2259 GAACACTTGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTC   2308

asis            3294 TGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTAGGGGGA   3343
                     |||||||||||||||||||||||||||||||||||||||||||.||||||
asis            2309 TGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTGGGGGGA   2358

asis            3344 ATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTC   3393
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            2359 ATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTC   2408

asis            3394 GCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCT   3443
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
asis            2409 GCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCT   2458

asis            3444 AACTTGATAATTCGCATGAAATAATTTTTTTATTTTGTTTTTTTTTTGCT   3493
                     |||||||||||||||||||||||| ||||||||||..|||||||||||||
asis            2459 AACTTGATAATTCGCATGAAATAA-TTTTTTATTTGTTTTTTTTTTTGCT   2507

asis            3494 CTTAATTTTAGWGGGRGTGTTTATTTTTATTCTAATAAAAAGGATCCGTT   3543
                     |||||||||||.||  .|||||||||||||||||||||||||||||||||
asis            2508 CTTAATTTTAGAGG--ATGTTTATTTTTATTCTAATAAAAAGGATCCGTT   2555

asis            3544 GAA   3546
                     |||
asis            2556 GAA   2558


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