BLASTN 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|1348916|gb|G26684|G26684 human STS
STS_D11570.gi|1375195|gb|G26945|G26945 human STS SHGC-32699.
         (285 letters)

Database: data/sts
           87,792 sequences; 31,998,854 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1348916|gb|G26684|G26684 human STS STS_D11570. >gi|1375195|g...   517  e-146
gi|4516686|dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA cl...    32  1.6
gi|6120827|gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens ST...    32  1.6
gi|720683|gb|G03725|G03725 human STS WI-344.                          32  1.6
gi|5690111|gb|G54226.1|G54226 B124N23/SP6 Human Chromosome 12 H...    30  6.5
gi|4493307|gb|G47007.1|G47007 Z15259_1 Zebrafish AB Danio rerio...    30  6.5
gi|4491799|gb|G45508.1|G45508 Z24506_1 Zebrafish AB Danio rerio...    30  6.5
gi|6121596|gb|G56277.1|G56277 SHGC-101791 Human Homo sapiens ST...    30  6.5
gi|5222417|gb|G51240.1|G51240 SHGC-80720 Human Homo sapiens STS...    30  6.5
gi|5221977|gb|G50800.1|G50800 SHGC-83850 Human Homo sapiens STS...    30  6.5
gi|5224501|gb|G53324.1|G53324 SHGC-82315 Human Homo sapiens STS...    30  6.5
gi|4529247|gb|G48587.1|G48587 SHGC-82546 Human Homo sapiens STS...    30  6.5
gi|3359917|gb|G40708|G40708 Z8947 Zebrafish AB Danio rerio STS ...    30  6.5
gi|3359244|gb|G40035|G40035 Z13538 Zebrafish AB Danio rerio STS...    30  6.5
gi|1347715|gb|G25483|G25483 human STS EST334642.                      30  6.5
gi|1244262|gb|G19475|G19475 human STS SHGC-18755.                     30  6.5
gi|1232611|emb|Z51311|HS302WC9 H.sapiens (D5S2069) DNA segment ...    30  6.5
gi|1223022|gb|G18565|G18565 BMS485 cow Bos taurus STS genomic, ...    30  6.5
gi|1161779|gb|G15890|G15890 human STS CHLC.UTR_01448_M84721.P56...    30  6.5
gi|858803|gb|G05558|G05558 human STS WI-7105.                         30  6.5
gi|1342455|gb|G22129|G22129 human STS WI-14200.                       30  6.5
gi|1347001|gb|G24769|G24769 human STS EST129834.                      30  6.5
gi|605469|gb|L31223|HUMUT821B Human STS UT821, 3' primer bind.        30  6.5

>gi|1348916|gb|G26684|G26684 human STS STS_D11570.
           >gi|1375195|gb|G26945|G26945 human STS SHGC-32699.
           Length = 285
           
 Score =  517 bits (261), Expect = e-146
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatccattcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatccattcaca 60

                                                                       
Query: 61  cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnactnttgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnactnttgagc 120

                                                                       
Query: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtnctggaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtnctggaggc 180

                                                                       
Query: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttgtagcgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttgtagcgcaa 240

                                                        
Query: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285


>gi|4516686|dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA clone,
           OT33.16/752f07, microsatellite sequence, sequence tagged
           site
           Length = 307
           
 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 221 ggaaagttcttgtagc 236
           ||||||||||||||||
Sbjct: 32  ggaaagttcttgtagc 47


>gi|6120827|gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 711
           
 Score = 32.2 bits (16), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 210 gaaatnaaaatggaaagtt 228
           ||||| |||||||||||||
Sbjct: 588 gaaataaaaatggaaagtt 606


>gi|720683|gb|G03725|G03725 human STS WI-344.
           Length = 246
           
 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 260 ctcaataaatgctagt 275
           ||||||||||||||||
Sbjct: 178 ctcaataaatgctagt 163


>gi|5690111|gb|G54226.1|G54226 B124N23/SP6 Human Chromosome 12 Homo
           sapiens STS genomic clone RPCI-11-B124N23 SP6, sequence
           tagged site
           Length = 550
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 216 aaaatggaaagttct 230
           |||||||||||||||
Sbjct: 330 aaaatggaaagttct 344


>gi|4493307|gb|G47007.1|G47007 Z15259_1 Zebrafish AB Danio rerio STS
           genomic clone Z15259 5', sequence tagged site
           Length = 442
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 121 ttctgttcctagaga 135
           |||||||||||||||
Sbjct: 384 ttctgttcctagaga 370


>gi|4491799|gb|G45508.1|G45508 Z24506_1 Zebrafish AB Danio rerio STS
           genomic clone Z24506 5', sequence tagged site
           Length = 272
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 221 ggaaagttcttgtag 235
           |||||||||||||||
Sbjct: 138 ggaaagttcttgtag 124


>gi|6121596|gb|G56277.1|G56277 SHGC-101791 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 641
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 258 tgctcaataaatgct 272
           |||||||||||||||
Sbjct: 216 tgctcaataaatgct 202


>gi|5222417|gb|G51240.1|G51240 SHGC-80720 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 712
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 265 taaatgctagtntgttat 282
           ||||||||||| ||||||
Sbjct: 293 taaatgctagtttgttat 310


>gi|5221977|gb|G50800.1|G50800 SHGC-83850 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 422
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 258 tgctcaataaatgct 272
           |||||||||||||||
Sbjct: 32  tgctcaataaatgct 18


>gi|5224501|gb|G53324.1|G53324 SHGC-82315 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 428
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 258 tgctcaataaatgct 272
           |||||||||||||||
Sbjct: 47  tgctcaataaatgct 33


>gi|4529247|gb|G48587.1|G48587 SHGC-82546 Human Homo sapiens STS
           genomic, sequence tagged site
           Length = 694
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 265 taaatgctagtntgttat 282
           ||||||||||| ||||||
Sbjct: 292 taaatgctagtttgttat 309


>gi|3359917|gb|G40708|G40708 Z8947 Zebrafish AB Danio rerio STS
           genomic
           Length = 549
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 47  aacatccattcacac 61
           |||||||||||||||
Sbjct: 479 aacatccattcacac 465


>gi|3359244|gb|G40035|G40035 Z13538 Zebrafish AB Danio rerio STS
           genomic
           Length = 536
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 121 ttctgttcctagaga 135
           |||||||||||||||
Sbjct: 433 ttctgttcctagaga 419


>gi|1347715|gb|G25483|G25483 human STS EST334642.
           Length = 407
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 45  ctaacatccattcac 59
           |||||||||||||||
Sbjct: 389 ctaacatccattcac 403


>gi|1244262|gb|G19475|G19475 human STS SHGC-18755.
           Length = 400
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 258 tgctcaataaatgct 272
           |||||||||||||||
Sbjct: 324 tgctcaataaatgct 310


>gi|1232611|emb|Z51311|HS302WC9 H.sapiens (D5S2069) DNA segment
           containing (CA) repeat; clone AFM302wc9; single read,
           sequence tagged site [Homo sapiens]
           Length = 374
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 95  acagacatggtttgt 109
           |||||||||||||||
Sbjct: 246 acagacatggtttgt 260


>gi|1223022|gb|G18565|G18565 BMS485 cow Bos taurus STS genomic,
           sequence tagged site [Bos taurus]
           Length = 181
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 260 ctcaataaatgctag 274
           |||||||||||||||
Sbjct: 145 ctcaataaatgctag 159


>gi|1161779|gb|G15890|G15890 human STS CHLC.UTR_01448_M84721.P56085
           clone UTR_01448_M84721.
           Length = 729
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 253 gtagctgctcaataaatgc 271
           |||| ||||||||||||||
Sbjct: 698 gtaggtgctcaataaatgc 716


>gi|858803|gb|G05558|G05558 human STS WI-7105.
           Length = 735
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 222 gaaagttcttgtagc 236
           |||||||||||||||
Sbjct: 543 gaaagttcttgtagc 529


>gi|1342455|gb|G22129|G22129 human STS WI-14200.
           Length = 373
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 258 tgctcaataaatgct 272
           |||||||||||||||
Sbjct: 33  tgctcaataaatgct 19


>gi|1347001|gb|G24769|G24769 human STS EST129834.
           Length = 306
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 220 tggaaagttcttgta 234
           |||||||||||||||
Sbjct: 144 tggaaagttcttgta 158


>gi|605469|gb|L31223|HUMUT821B Human STS UT821, 3' primer bind.
           Length = 127
           
 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 95  acagacatggtttgt 109
           |||||||||||||||
Sbjct: 106 acagacatggtttgt 92


  Database: data/sts
    Posted date:  Feb 11, 2000  2:37 PM
  Number of letters in database: 31,998,854
  Number of sequences in database:  87,792
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3835
Number of Sequences: 87792
Number of extensions: 3835
Number of successful extensions: 1155
Number of sequences better than 10.0: 24
length of query: 285
length of database: 31,998,854
effective HSP length: 17
effective length of query: 268
effective length of database: 30,506,390
effective search space: 8175712520
effective search space used: 8175712520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
