TBLASTN 2.2.26+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: NCBI Transcript Reference Sequences
           2,903,055 sequences; 4,626,651,242 total letters



Query= gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus
subtilis subsp. subtilis str. 168]

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ref|XM_001425911.1|  Paramecium tetraurelia hypothetical protein ...  34.7    0.74 
ref|XM_003382561.1|  PREDICTED: Amphimedon queenslandica CWF19-li...  32.0    6.4  
ref|XM_001180111.1|  PREDICTED: Strongylocentrotus purpuratus hyp...  31.6    7.0  
ref|XM_777959.1|  PREDICTED: Strongylocentrotus purpuratus hypoth...  31.6    7.0  


>ref|XM_001425911.1| Paramecium tetraurelia hypothetical protein (GSPATT00004923001) 
partial mRNA
Length=4632

 Score = 34.7 bits (78),  Expect = 0.74, Method: Composition-based stats.
 Identities = 15/43 (35%), Positives = 26/43 (60%), Gaps = 0/43 (0%)
 Frame = +1

Query  31    PDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLD  73
             P +   TK+GT +GL   HTI   + +  +SL++ E++  D+D
Sbjct  1744  PKTATGTKKGTIIGLLSIHTILFILTSHALSLEVKEQT*KDID  1872


>ref|XM_003382561.1| PREDICTED: Amphimedon queenslandica CWF19-like protein 1-like 
(LOC100635130), mRNA
Length=1811

 Score = 32.0 bits (71),  Expect = 6.4, Method: Composition-based stats.
 Identities = 19/74 (26%), Positives = 36/74 (49%), Gaps = 11/74 (15%)
 Frame = +2

Query  29    VSPDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLDK--------FNSGDK  80
             +  DS +   +G   GL D H + + + + P S+D  +E   ++DK        F+S ++
Sbjct  1106  IGNDSYLALSKG---GLVDEHVLILPIGHYPSSIDAPQEVIEEIDKFKVALRKYFSSKNQ  1276

Query  81    VTITYEKNDEGQLL  94
               + +E+N   Q L
Sbjct  1277  TCVMFERNFRSQHL  1318


>ref|XM_001180111.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 
(LOC577746), mRNA
Length=1593

 Score = 31.6 bits (70),  Expect = 7.0, Method: Composition-based stats.
 Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 8/59 (14%)
 Frame = +1

Query  44    GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL  94
             GL   HT+ + V +    LD+TEE  ++LD+F S          K  + YE+N   Q L
Sbjct  1057  GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL  1233


>ref|XM_777959.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 
(LOC577746), mRNA
Length=1593

 Score = 31.6 bits (70),  Expect = 7.0, Method: Composition-based stats.
 Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 8/59 (14%)
 Frame = +1

Query  44    GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL  94
             GL   HT+ + V +    LD+TEE  ++LD+F S          K  + YE+N   Q L
Sbjct  1057  GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL  1233



Lambda     K      H
   0.302    0.125    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 38578527885


  Database: NCBI Transcript Reference Sequences
    Posted date:  Mar 1, 2012  8:32 PM
  Number of letters in database: 4,626,651,242
  Number of sequences in database:  2,903,055



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
