BLASTP 2.0.14 [Jun-29-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= aseq 
         (82 letters)

Database: SWISS_PROT
           87,404 sequences; 31,753,758 total letters

Searching..................................................done


Results from round 1


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). ...    27  6.0
DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws...    27  7.9
DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious cl...    27  7.9
DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna po...    27  7.9
DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna po...    27  7.9
DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna...    27  7.9

>YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). hypothetical
            myosin-like protein in ilv2-ade17 intergenic region.
            5/2000
          Length = 1219

 Score = 27.4 bits (59), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 52   NLIALQHIPLSPAGVIAKRPAP 73
            ++ A QH+P +PA   +K+PAP
Sbjct: 992  SIAAAQHVPTAPASRHSKKPAP 1013


>DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws23). dna
           polymerase (ec 2.7.7.7) (fragment). 12/1998
          Length = 556

 Score = 27.0 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 115 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 157


>DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious clone) (whv 8). dna
           polymerase (ec 2.7.7.7). 12/1998
          Length = 884

 Score = 27.0 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485


>DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna polymerase (ec
           2.7.7.7). 12/1998
          Length = 883

 Score = 27.0 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 442 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 484


>DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna polymerase (ec
           2.7.7.7). 12/1998
          Length = 884

 Score = 27.0 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485


>DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna polymerase (ec
           2.7.7.7). 12/1998
          Length = 884

 Score = 27.0 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485


Searching..................................................done


Results from round 2


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value
Sequences used in model and found again:

Sequences not found previously or not previously below threshold:

YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). ...    27  5.9
DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws...    27  5.9
DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious cl...    27  5.9
DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna po...    27  5.9
DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna po...    27  5.9
DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna...    27  5.9
DPOL_HPBGS P03161 ground squirrel hepatitis virus (gshv). dn...    27  7.8


CONVERGED!
>YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). hypothetical
            myosin-like protein in ilv2-ade17 intergenic region.
            5/2000
          Length = 1219

 Score = 27.4 bits (59), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 52   NLIALQHIPLSPAGVIAKRPAP 73
            ++ A QH+P +PA   +K+PAP
Sbjct: 992  SIAAAQHVPTAPASRHSKKPAP 1013


>DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws23). dna
           polymerase (ec 2.7.7.7) (fragment). 12/1998
          Length = 556

 Score = 27.4 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 115 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 157


>DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious clone) (whv 8). dna
           polymerase (ec 2.7.7.7). 12/1998
          Length = 884

 Score = 27.4 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485


>DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna polymerase (ec
           2.7.7.7). 12/1998
          Length = 883

 Score = 27.4 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 442 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 484


>DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna polymerase (ec
           2.7.7.7). 12/1998
          Length = 884

 Score = 27.4 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485


>DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna polymerase (ec
           2.7.7.7). 12/1998
          Length = 884

 Score = 27.4 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485


>DPOL_HPBGS P03161 ground squirrel hepatitis virus (gshv). dna polymerase (ec
           2.7.7.7) (a protein). 12/1998
          Length = 881

 Score = 27.0 bits (58), Expect = 7.8
 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%)

Query: 34  IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66
           +HWP F   N+ T   L   NL         A  HIP+SPA V
Sbjct: 440 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPVSPAAV 482


  Database: /dbase/swissprot/main/release/sp
    Posted date:  Jun 21, 2000 12:39 PM
  Number of letters in database: 31,411,157
  Number of sequences in database:  86,593
  
  Database: /dbase/swissprot/main/update/spu
    Posted date:  Jul 30, 2000 11:00 PM
  Number of letters in database: 342,601
  Number of sequences in database:  811
  
Lambda     K      H
   0.318    0.132    0.422 

Lambda     K      H
   0.270   0.0464    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7377465
Number of Sequences: 87404
Number of extensions: 229017
Number of successful extensions: 569
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 13
length of query: 82
length of database: 31,753,758
effective HSP length: 44
effective length of query: 38
effective length of database: 27,907,982
effective search space: 1060503316
effective search space used: 1060503316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 58 (27.0 bits)
