mirror of
https://github.com/google-deepmind/alphafold3.git
synced 2025-10-20 21:33:47 +08:00
47 lines
1.7 KiB
Bash
47 lines
1.7 KiB
Bash
#!/bin/bash
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# Copyright 2024 DeepMind Technologies Limited
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#
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# AlphaFold 3 source code is licensed under CC BY-NC-SA 4.0. To view a copy of
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# this license, visit https://creativecommons.org/licenses/by-nc-sa/4.0/
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#
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# To request access to the AlphaFold 3 model parameters, follow the process set
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# out at https://github.com/google-deepmind/alphafold3. You may only use these
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# if received directly from Google. Use is subject to terms of use available at
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# https://github.com/google-deepmind/alphafold3/blob/main/WEIGHTS_TERMS_OF_USE.md
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set -euo pipefail
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readonly db_dir=${1:-$HOME/public_databases}
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for cmd in wget tar zstd ; do
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if ! command -v "${cmd}" > /dev/null 2>&1; then
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echo "${cmd} is not installed. Please install it."
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fi
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done
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echo "Fetching databases to ${db_dir}"
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mkdir -p "${db_dir}"
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readonly SOURCE=https://storage.googleapis.com/alphafold-databases/v3.0
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echo "Start Fetching and Untarring 'pdb_2022_09_28_mmcif_files.tar'"
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wget --quiet --output-document=- \
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"${SOURCE}/pdb_2022_09_28_mmcif_files.tar.zst" | \
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tar --no-same-owner --no-same-permissions \
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--use-compress-program=zstd -xf - --directory="${db_dir}" &
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for NAME in mgy_clusters_2022_05.fa \
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bfd-first_non_consensus_sequences.fasta \
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uniref90_2022_05.fa uniprot_all_2021_04.fa \
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pdb_seqres_2022_09_28.fasta \
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rnacentral_active_seq_id_90_cov_80_linclust.fasta \
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nt_rna_2023_02_23_clust_seq_id_90_cov_80_rep_seq.fasta \
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rfam_14_9_clust_seq_id_90_cov_80_rep_seq.fasta ; do
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echo "Start Fetching '${NAME}'"
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wget --quiet --output-document=- "${SOURCE}/${NAME}.zst" | \
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zstd --decompress > "${db_dir}/${NAME}" &
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done
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wait
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echo "Complete"
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