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Clean up installation instructions

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Augustin Zidek
2024-11-25 13:16:06 +00:00
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docs/installation.md
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@ -33,8 +33,7 @@ The instructions provided below describe how to:
Clean Ubuntu images are available on Google Cloud, AWS, Azure, and other major
platforms.
We first provisioned a new machine in Google Cloud Platform using the following
command. We were using a Google Cloud project that was already set up.
Using an existing Google Cloud project, we provisioned a new machine:
* We recommend using `--machine-type a2-ultragpu-1g` but feel free to use
`--machine-type a2-highgpu-1g` for smaller predictions.
@ -119,7 +118,7 @@ sudo nvidia-smi --gpu-reset
nvidia-smi # Check that the drivers are installed.
```
Accept "Pending kernel upgrade" dialog if it appears.
Accept the "Pending kernel upgrade" dialog if it appears.
You will need to reboot the instance with `sudo reboot now` to reset the GPU if
you see the following warning:
@ -155,7 +154,7 @@ Check that your container can see the GPU:
docker run --rm --gpus all nvidia/cuda:12.6.0-base-ubuntu22.04 nvidia-smi
```
The output should look similar to this:
Example output:
```text
Mon Nov 11 12:00:00 2024
@ -182,7 +181,7 @@ Mon Nov 11 12:00:00 2024
## Obtaining AlphaFold 3 Source Code
You will need to have `git` installed to download the AlphaFold 3 repository:
Install `git` and download the AlphaFold 3 repository:
```sh
git clone https://github.com/google-deepmind/alphafold3.git
@ -190,7 +189,8 @@ git clone https://github.com/google-deepmind/alphafold3.git
## Obtaining Genetic Databases
This step requires `wget` and `zstd` to be installed on your machine.
This step requires `wget` and `zstd` to be installed on your machine. On
Debian-based systems install them by running `sudo apt install wget zstd`.
AlphaFold 3 needs multiple genetic (sequence) protein and RNA databases to run: