frozenleaves/alphafold3
1
0
Fork 0
mirror of https://github.com/google-deepmind/alphafold3.git synced 2025-10-20 13:23:47 +08:00
Code Issues Packages Projects Releases Wiki Activity

Fix the documentation for RNA MSA

Browse Source 
Fixes https://github.com/google-deepmind/alphafold3/issues/448

PiperOrigin-RevId: 774840546
Change-Id: Icd7e34c190052aa6da82d2edffa4050f36e00837
This commit is contained in:
Augustin Zidek
2025-06-23 10:43:04 -07:00
committed by Copybara-Service
parent 0f865a667c
commit 6cf825575b
1 changed files with 6 additions and 5 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
docs/input.md
View File

@ -404,10 +404,11 @@ the paper.
RNA `unpairedMsa` can be either:
1. Unset (or set explicitly to `null`). AlphaFold 3 won't build MSA for this
RNA chain.
2. Set to an empty string (`""`). AlphaFold 3 won't build MSA and will run
MSA-free for this RNA chain.
1. Unset (or set explicitly to `null`). AlphaFold 3 will build MSA for this RNA
chain automatically. This is the recommended option.
2. Set to an empty string (`""`). AlphaFold 3 won't build the MSA for this RNA
chain and the MSA input to the model will be just the RNA chain (equivalent
to running MSA-free for this RNA chain).
3. Set to a non-empty A3M string. AlphaFold 3 will use the provided MSA for
this RNA chain.
@ -418,7 +419,7 @@ unpaired MSA (see [MSA Pairing](#msa-pairing) below for more details).
The following combinations are valid for a given protein chain:
1. Both `unpairedMsa` and `pairedMsa` fields are unset (or explicitly set to
1. Both `unpairedMsa` and `pairedMsa` fields are unset (or set explicitly to
`null`), AlphaFold 3 will build both MSAs automatically. This is the
recommended option.
2. The `unpairedMsa` is set to to a non-empty A3M string, `pairedMsa` set to an