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Fix Singularity run commands

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PiperOrigin-RevId: 698024666
This commit is contained in:
Augustin Zidek
2024-11-19 16:21:50 +00:00
parent cb2133d0fd
commit 65328c9cfb
1 changed files with 4 additions and 3 deletions
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7
docs/installation.md
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@ -385,7 +385,7 @@ singularity exec \
--bind <MODEL_PARAMETERS_DIR>:/root/models \
--bind <DB_DIR>:/root/public_databases \
alphafold3.sif \
python alphafold3/run_alphafold.py \
python run_alphafold.py \
--json_path=/root/af_input/fold_input.json \
--model_dir=/root/models \
--db_dir=/root/public_databases \
@ -396,13 +396,14 @@ Or with some databases on SSD in location `<SSD_DB_DIR>`:
```sh
singularity exec \
--nv alphafold3.simg \
--nv \
--bind $HOME/af_input:/root/af_input \
--bind $HOME/af_output:/root/af_output \
--bind <MODEL_PARAMETERS_DIR>:/root/models \
--bind <SSD_DB_DIR>:/root/public_databases \
--bind <DB_DIR>:/root/public_databases_fallback \
python alphafold3/run_alphafold.py \
alphafold3.sif \
python run_alphafold.py \
--json_path=/root/af_input/fold_input.json \
--model_dir=/root/models \
--db_dir=/root/public_databases \