mirror of
https://github.com/google-deepmind/alphafold3.git
synced 2025-10-20 21:33:47 +08:00
Make query sequence logging less verbose in MSA tools
PiperOrigin-RevId: 775647191 Change-Id: I3804586da51525b58c98a91c400523cda160eaf7
This commit is contained in:
committed by
Copybara-Service
parent
6cf825575b
commit
53d2acc5b7
@ -75,7 +75,13 @@ class Jackhmmer(msa_tool.MsaTool):
|
||||
|
||||
def query(self, target_sequence: str) -> msa_tool.MsaToolResult:
|
||||
"""Queries the database using Jackhmmer."""
|
||||
logging.info('Query sequence: %s', target_sequence)
|
||||
logging.info(
|
||||
'Query sequence: %s',
|
||||
target_sequence
|
||||
if len(target_sequence) <= 16
|
||||
else f'{target_sequence[:16]}... (len {len(target_sequence)})',
|
||||
)
|
||||
|
||||
with tempfile.TemporaryDirectory() as query_tmp_dir:
|
||||
input_fasta_path = os.path.join(query_tmp_dir, 'query.fasta')
|
||||
subprocess_utils.create_query_fasta_file(
|
||||
|
@ -85,7 +85,12 @@ class Nhmmer(msa_tool.MsaTool):
|
||||
|
||||
def query(self, target_sequence: str) -> msa_tool.MsaToolResult:
|
||||
"""Query the database using Nhmmer."""
|
||||
logging.info('Query sequence: %s', target_sequence)
|
||||
logging.info(
|
||||
'Query sequence: %s',
|
||||
target_sequence
|
||||
if len(target_sequence) <= 16
|
||||
else f'{target_sequence[:16]}... (len {len(target_sequence)})',
|
||||
)
|
||||
|
||||
with tempfile.TemporaryDirectory() as query_tmp_dir:
|
||||
input_a3m_path = os.path.join(query_tmp_dir, 'query.a3m')
|
||||
|
Reference in New Issue
Block a user