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Add antibody-antigen metadata from AlphaFold 3 paper
PiperOrigin-RevId: 717534278
This commit is contained in:
167
docs/metadata_antibody_antigen.csv
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167
docs/metadata_antibody_antigen.csv
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pdb_id,chain_id_1,chain_id_2,cluster_key_chain_1,cluster_key_chain_2,interface_cluster_key
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7fci,A,B,5581,5964,5581|5964
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7fci,A,C,5581,17640,17640|5581
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7mnl,A,C,8677,17640,17640|8677
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7n0a,A,B,33602,5964,33602|5964
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7n0a,A,C,33602,17640,17640|33602
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7ox1,A,G,17640,41184,17640|41184
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7ox1,B,G,5964,41184,41184|5964
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7ox2,A,C,17640,41184,17640|41184
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7ox2,B,C,5964,41184,41184|5964
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7ox3,A,C,5964,41184,41184|5964
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7ox3,B,C,17640,41184,17640|41184
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7ox4,A,C,17640,41184,17640|41184
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7ox4,B,C,5964,41184,41184|5964
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7q6c,A,B,15496,17640,15496|17640
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7q6c,A,D,15496,5964,15496|5964
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7r58,A,B,30790,17640,17640|30790
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7r58,A,C,30790,5964,30790|5964
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7ru6,A,B,7068,17640,17640|7068
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7sbd,A,C,17640,20692,17640|20692
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7sbd,B,C,5964,20692,20692|5964
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7sbg,A,C,17640,20692,17640|20692
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7sbg,B,C,5964,20692,20692|5964
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7sjo,A,F,7390,17640,17640|7390
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7sjo,A,I,7390,5964,5964|7390
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7sjo,B,G,7390,17640,17640|7390
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7sjo,B,H,7390,5964,5964|7390
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7sjo,C,D,7390,17640,17640|7390
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7sjo,C,E,7390,5964,5964|7390
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7sk3,A,C,45640,5964,45640|5964
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7sk3,A,D,45640,17640,17640|45640
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7sk3,A,E,45640,5964,45640|5964
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7sk3,A,F,45640,17640,17640|45640
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7sk4,A,C,45640,5964,45640|5964
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7sk4,A,D,45640,17640,17640|45640
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7sk4,A,E,45640,5964,45640|5964
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7sk4,A,F,45640,17640,17640|45640
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7sk5,A,B,45640,17640,17640|45640
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7sk5,A,D,45640,5964,45640|5964
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7sk6,A,C,45640,5964,45640|5964
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7sk6,A,D,45640,17640,17640|45640
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7sk7,A,C,45640,5964,45640|5964
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7sk7,A,D,45640,17640,17640|45640
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7sk8,A,C,45640,5964,45640|5964
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7sk8,A,D,45640,17640,17640|45640
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7sk8,A,E,45640,5964,45640|5964
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7sk8,A,F,45640,17640,17640|45640
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7sk9,A,B,45640,17640,17640|45640
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7sk9,A,C,45640,5964,45640|5964
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7st8,A,C,17640,41188,17640|41188
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7st8,B,C,5964,41188,41188|5964
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7t6x,E,H,5964,24273,24273|5964
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7t82,A,C,9703,5964,5964|9703
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7t82,A,D,9703,17640,17640|9703
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7t9m,A,C,17640,13210,13210|17640
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7t9m,B,C,5964,13210,13210|5964
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7t9n,A,D,5964,13210,13210|5964
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7t9n,B,D,17640,13210,13210|17640
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7tuf,A,B,22549,17640,17640|22549
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7tuf,A,C,22549,5964,22549|5964
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7tuf,A,E,22549,17640,17640|22549
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7tuf,B,D,17640,22549,17640|22549
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7tuf,D,E,22549,17640,17640|22549
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7tuf,D,F,22549,5964,22549|5964
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7tug,A,B,22549,17640,17640|22549
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7tug,A,C,22549,5964,22549|5964
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7u8c,A,B,20081,17640,17640|20081
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7u8c,A,C,20081,5964,20081|5964
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7u8g,A,C,29632,17640,17640|29632
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7u8g,A,D,29632,5964,29632|5964
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7uih,A,B,11223,5964,11223|5964
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7uih,A,C,11223,17640,11223|17640
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7uih,A,D,11223,5964,11223|5964
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7uih,A,E,11223,17640,11223|17640
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7um3,A,E,17640,33649,17640|33649
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7um3,B,E,5964,33649,33649|5964
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7ura,A,B,44530,5964,44530|5964
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7ura,A,C,44530,17640,17640|44530
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7urc,A,B,44530,5964,44530|5964
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7urc,A,C,44530,17640,17640|44530
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7urd,A,C,44530,5964,44530|5964
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7urd,A,D,44530,17640,17640|44530
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7ure,A,B,44530,5964,44530|5964
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7ure,A,C,44530,17640,17640|44530
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7uvf,A,C,23558,17640,17640|23558
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7uvf,A,D,23558,5964,23558|5964
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7uvf,B,E,23558,5964,23558|5964
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7uvf,B,F,23558,17640,17640|23558
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7vad,A,B,5581,17640,17640|5581
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7vad,A,C,5581,5964,5581|5964
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7vae,A,B,5581,17640,17640|5581
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7vae,A,C,5581,5964,5581|5964
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7vaf,A,C,17640,5581,17640|5581
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7vaf,B,C,5964,5581,5581|5964
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7vag,A,B,5581,17640,17640|5581
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7vag,A,C,5581,5964,5581|5964
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7vgr,A,E,5964,33673,33673|5964
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7vgr,A,F,5964,33673,33673|5964
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7vgr,B,E,17640,33673,17640|33673
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7vgr,B,F,17640,33673,17640|33673
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7vgr,C,E,5964,33673,33673|5964
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7vgr,C,F,5964,33673,33673|5964
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7vgr,D,E,17640,33673,17640|33673
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7vgr,D,F,17640,33673,17640|33673
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7vgs,A,B,33673,5964,33673|5964
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7vgs,A,C,33673,17640,17640|33673
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7vgs,A,E,33673,5964,33673|5964
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7vgs,B,D,5964,33673,33673|5964
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7vgs,D,E,33673,5964,33673|5964
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7vgs,D,F,33673,17640,17640|33673
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7vn9,A,C,17640,20046,17640|20046
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7vn9,B,C,5964,20046,20046|5964
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7vng,A,B,20046,17640,17640|20046
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7vng,A,C,20046,5964,20046|5964
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7w71,A,E,24335,17640,17640|24335
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7w71,A,F,24335,5964,24335|5964
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7wsi,A,B,5581,17640,17640|5581
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7wsi,A,C,5581,5964,5581|5964
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7xq8,A,B,26372,5964,26372|5964
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7xq8,C,D,26372,5964,26372|5964
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7zlg,A,D,17640,29547,17640|29547
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7zlg,C,D,5964,29547,29547|5964
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7zlh,A,D,17640,29547,17640|29547
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7zlh,C,D,5964,29547,29547|5964
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7zli,A,D,17640,29547,17640|29547
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7zli,C,D,5964,29547,29547|5964
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7zlj,A,D,17640,29547,17640|29547
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7zlj,C,D,5964,29547,29547|5964
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7zwi,A,C,7003,5964,5964|7003
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7zxf,A,C,7003,5964,5964|7003
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7zxf,A,E,7003,5964,5964|7003
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7zxg,A,C,7003,5964,5964|7003
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7zxk,A,F,26707,5964,26707|5964
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7zxk,A,G,26707,17640,17640|26707
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7zyi,A,B,5581,17640,17640|5581
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7zyi,A,C,5581,5964,5581|5964
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8cz5,A,B,24059,17640,17640|24059
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8cz5,A,C,24059,5964,24059|5964
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8dcy,A,C,17640,23342,17640|23342
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8dcy,B,C,5964,23342,23342|5964
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8ddk,A,C,17640,23342,17640|23342
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8ddk,B,C,5964,23342,23342|5964
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8djk,A,E,15456,17640,15456|17640
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8djk,B,D,15455,5964,15455|5964
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8djk,B,E,15455,17640,15455|17640
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8djm,A,E,15456,17640,15456|17640
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8djm,B,D,15455,5964,15455|5964
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8djm,B,E,15455,17640,15455|17640
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8dke,A,B,13979,17640,13979|17640
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8dke,A,C,13979,5964,13979|5964
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8dki,A,B,13979,17640,13979|17640
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8dki,A,C,13979,5964,13979|5964
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8dkm,A,C,17640,13979,13979|17640
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8dkm,B,C,5964,13979,13979|5964
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8dkw,A,C,17640,13979,13979|17640
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8dkw,B,C,5964,13979,13979|5964
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8dkx,A,C,17640,13979,13979|17640
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8dkx,B,C,5964,13979,13979|5964
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8hii,A,B,21158,17640,17640|21158
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8hii,A,D,21158,5964,21158|5964
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8hij,A,B,21158,17640,17640|21158
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8hij,A,D,21158,5964,21158|5964
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8hik,A,B,21158,17640,17640|21158
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8hik,A,D,21158,5964,21158|5964
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7so7,A,F,3006,5964,3006|5964
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7xy8,A,C,2517,17640,17640|2517
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7xy8,A,E,2517,5964,2517|5964
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9
docs/metadata_antibody_antigen.md
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9
docs/metadata_antibody_antigen.md
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# Metadata for Antibody-Antigen pairs used to create figure 5a.
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Figure 5a in the AlphaFold 3 paper was created using 71 antibody–antigen
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complexes, containing 166 antibody–antigen interfaces spanning 65 interface
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clusters. Scores were averaged within each interface cluster then across
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clusters. We provide metadata for these complexes and the associated clusters in
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this CSV file:
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https://github.com/google-deepmind/alphafold3/blob/main/docs/metadata_antibody_antigen.csv
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