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accelerate/examples/by_feature/cross_validation.py
Sylvain Gugger 5002e56704 Update quality tools to 2023 (#1046)
* Setup 2023 tooling for quality

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2023-02-07 13:34:05 -05:00

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Python

# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
from typing import List
import evaluate
import numpy as np
import torch
from datasets import DatasetDict, load_dataset
# New Code #
# We'll be using StratifiedKFold for this example
from sklearn.model_selection import StratifiedKFold
from torch.optim import AdamW
from torch.utils.data import DataLoader
from transformers import AutoModelForSequenceClassification, AutoTokenizer, get_linear_schedule_with_warmup, set_seed
from accelerate import Accelerator, DistributedType
########################################################################
# This is a fully working simple example to use Accelerate,
# specifically showcasing how to perform Cross Validation,
# and builds off the `nlp_example.py` script.
#
# This example trains a Bert base model on GLUE MRPC
# in any of the following settings (with the same script):
# - single CPU or single GPU
# - multi GPUS (using PyTorch distributed mode)
# - (multi) TPUs
# - fp16 (mixed-precision) or fp32 (normal precision)
#
# To help focus on the differences in the code, building `DataLoaders`
# was refactored into its own function.
# New additions from the base script can be found quickly by
# looking for the # New Code # tags
#
# To run it in each of these various modes, follow the instructions
# in the readme for examples:
# https://github.com/huggingface/accelerate/tree/main/examples
#
########################################################################
MAX_GPU_BATCH_SIZE = 16
EVAL_BATCH_SIZE = 32
# New Code #
# We need a different `get_dataloaders` function that will build dataloaders by index
def get_fold_dataloaders(
accelerator: Accelerator, dataset: DatasetDict, train_idxs: List[int], valid_idxs: List[int], batch_size: int = 16
):
"""
Gets a set of train, valid, and test dataloaders for a particular fold
Args:
accelerator (`Accelerator`):
The main `Accelerator` object
train_idxs (list of `int`):
The split indices for the training dataset
valid_idxs (list of `int`):
The split indices for the validation dataset
batch_size (`int`):
The size of the minibatch. Default is 16
"""
tokenizer = AutoTokenizer.from_pretrained("bert-base-cased")
datasets = DatasetDict(
{
"train": dataset["train"].select(train_idxs),
"validation": dataset["train"].select(valid_idxs),
"test": dataset["validation"],
}
)
def tokenize_function(examples):
# max_length=None => use the model max length (it's actually the default)
outputs = tokenizer(examples["sentence1"], examples["sentence2"], truncation=True, max_length=None)
return outputs
# Apply the method we just defined to all the examples in all the splits of the dataset
# starting with the main process first:
with accelerator.main_process_first():
tokenized_datasets = datasets.map(
tokenize_function,
batched=True,
remove_columns=["idx", "sentence1", "sentence2"],
)
# We also rename the 'label' column to 'labels' which is the expected name for labels by the models of the
# transformers library
tokenized_datasets = tokenized_datasets.rename_column("label", "labels")
def collate_fn(examples):
# On TPU it's best to pad everything to the same length or training will be very slow.
if accelerator.distributed_type == DistributedType.TPU:
return tokenizer.pad(examples, padding="max_length", max_length=128, return_tensors="pt")
return tokenizer.pad(examples, padding="longest", return_tensors="pt")
# Instantiate dataloaders.
train_dataloader = DataLoader(
tokenized_datasets["train"], shuffle=True, collate_fn=collate_fn, batch_size=batch_size
)
eval_dataloader = DataLoader(
tokenized_datasets["validation"], shuffle=False, collate_fn=collate_fn, batch_size=EVAL_BATCH_SIZE
)
test_dataloader = DataLoader(
tokenized_datasets["test"], shuffle=False, collate_fn=collate_fn, batch_size=EVAL_BATCH_SIZE
)
return train_dataloader, eval_dataloader, test_dataloader
def training_function(config, args):
# New Code #
test_predictions = []
# Download the dataset
datasets = load_dataset("glue", "mrpc")
# Create our splits
kfold = StratifiedKFold(n_splits=int(args.num_folds))
# Initialize accelerator
accelerator = Accelerator(cpu=args.cpu, mixed_precision=args.mixed_precision)
# Sample hyper-parameters for learning rate, batch size, seed and a few other HPs
lr = config["lr"]
num_epochs = int(config["num_epochs"])
seed = int(config["seed"])
batch_size = int(config["batch_size"])
metric = evaluate.load("glue", "mrpc")
# If the batch size is too big we use gradient accumulation
gradient_accumulation_steps = 1
if batch_size > MAX_GPU_BATCH_SIZE and accelerator.distributed_type != DistributedType.TPU:
gradient_accumulation_steps = batch_size // MAX_GPU_BATCH_SIZE
batch_size = MAX_GPU_BATCH_SIZE
set_seed(seed)
# New Code #
# Create our folds:
folds = kfold.split(np.zeros(datasets["train"].num_rows), datasets["train"]["label"])
test_references = []
# Iterate over them
for i, (train_idxs, valid_idxs) in enumerate(folds):
train_dataloader, eval_dataloader, test_dataloader = get_fold_dataloaders(
accelerator,
datasets,
train_idxs,
valid_idxs,
)
# Instantiate the model (we build the model here so that the seed also control new weights initialization)
model = AutoModelForSequenceClassification.from_pretrained("bert-base-cased", return_dict=True)
# We could avoid this line since the accelerator is set with `device_placement=True` (default value).
# Note that if you are placing tensors on devices manually, this line absolutely needs to be before the optimizer
# creation otherwise training will not work on TPU (`accelerate` will kindly throw an error to make us aware of that).
model = model.to(accelerator.device)
# Instantiate optimizer
optimizer = AdamW(params=model.parameters(), lr=lr)
# Instantiate scheduler
lr_scheduler = get_linear_schedule_with_warmup(
optimizer=optimizer,
num_warmup_steps=100,
num_training_steps=(len(train_dataloader) * num_epochs) // gradient_accumulation_steps,
)
# Prepare everything
# There is no specific order to remember, we just need to unpack the objects in the same order we gave them to the
# prepare method.
model, optimizer, train_dataloader, eval_dataloader, lr_scheduler = accelerator.prepare(
model, optimizer, train_dataloader, eval_dataloader, lr_scheduler
)
# Now we train the model
for epoch in range(num_epochs):
model.train()
for step, batch in enumerate(train_dataloader):
# We could avoid this line since we set the accelerator with `device_placement=True`.
batch.to(accelerator.device)
outputs = model(**batch)
loss = outputs.loss
loss = loss / gradient_accumulation_steps
accelerator.backward(loss)
if step % gradient_accumulation_steps == 0:
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
model.eval()
for step, batch in enumerate(eval_dataloader):
# We could avoid this line since we set the accelerator with `device_placement=True`.
batch.to(accelerator.device)
with torch.no_grad():
outputs = model(**batch)
predictions = outputs.logits.argmax(dim=-1)
predictions, references = accelerator.gather_for_metrics((predictions, batch["labels"]))
metric.add_batch(
predictions=predictions,
references=references,
)
eval_metric = metric.compute()
# Use accelerator.print to print only on the main process.
accelerator.print(f"epoch {epoch}:", eval_metric)
# New Code #
# We also run predictions on the test set at the very end
fold_predictions = []
for step, batch in enumerate(test_dataloader):
# We could avoid this line since we set the accelerator with `device_placement=True`.
batch.to(accelerator.device)
with torch.no_grad():
outputs = model(**batch)
predictions = outputs.logits
predictions, references = accelerator.gather_for_metrics((predictions, batch["labels"]))
fold_predictions.append(predictions.cpu())
if i == 0:
# We need all of the test predictions
test_references.append(references.cpu())
# Use accelerator.print to print only on the main process.
test_predictions.append(torch.cat(fold_predictions, dim=0))
# We now need to release all our memory and get rid of the current model, optimizer, etc
accelerator.free_memory()
# New Code #
# Finally we check the accuracy of our folded results:
test_references = torch.cat(test_references, dim=0)
preds = torch.stack(test_predictions, dim=0).sum(dim=0).div(int(args.num_folds)).argmax(dim=-1)
test_metric = metric.compute(predictions=preds, references=test_references)
accelerator.print("Average test metrics from all folds:", test_metric)
def main():
parser = argparse.ArgumentParser(description="Simple example of training script.")
parser.add_argument(
"--mixed_precision",
type=str,
default=None,
choices=["no", "fp16", "bf16"],
help="Whether to use mixed precision. Choose"
"between fp16 and bf16 (bfloat16). Bf16 requires PyTorch >= 1.10."
"and an Nvidia Ampere GPU.",
)
parser.add_argument("--cpu", action="store_true", help="If passed, will train on the CPU.")
# New Code #
parser.add_argument("--num_folds", type=int, default=3, help="The number of splits to perform across the dataset")
args = parser.parse_args()
config = {"lr": 2e-5, "num_epochs": 3, "seed": 42, "batch_size": 16}
training_function(config, args)
if __name__ == "__main__":
main()